HEADER TRANSCRIPTION 07-JUL-16 5LGM TITLE GP5.7 MUTANT L42A COMPND MOL_ID: 1; COMPND 2 MOLECULE: FUSION PROTEIN 5.5/5.7; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T7; SOURCE 3 ORGANISM_TAXID: 10760; SOURCE 4 GENE: 5.5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI-PICHIA PASTORIS SHUTTLE VECTOR SOURCE 6 PPPARG4; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1182032 KEYWDS TRANSCRIPTION EFFECTOR, ANTI-SIGMA EFFECTOR, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR B.LIU,S.MATTHEWS REVDAT 1 16-AUG-17 5LGM 0 JRNL AUTH B.LIU,A.SHADRIN,C.SHEPPARD,V.MEKLER,Y.XU,K.SEVERINOV, JRNL AUTH 2 S.MATTHEWS,S.WIGNESHWERARAJ JRNL TITL GP5.7 MUTANT L42A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH B.LIU,A.SHADRIN,C.SHEPPARD,V.MEKLER,Y.XU,K.SEVERINOV, REMARK 1 AUTH 2 S.MATTHEWS,S.WIGNESHWERARAJ REMARK 1 TITL A BACTERIOPHAGE TRANSCRIPTION REGULATOR INHIBITS BACTERIAL REMARK 1 TITL 2 TRANSCRIPTION INITIATION BY SIGMA FACTOR DISPLACEMENT. REMARK 1 REF NUCLEIC ACIDS RES. V. 42 4294 2014 REMARK 1 REFN ESSN 1362-4962 REMARK 1 PMID 24482445 REMARK 1 DOI 10.1093/NAR/GKU080 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRVIEW, ARIA REMARK 3 AUTHORS : JOHNSON, ONE MOON SCIENTIFIC (NMRVIEW), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LGM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000668. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6 REMARK 210 IONIC STRENGTH : NA REMARK 210 PRESSURE : 1 BAR REMARK 210 SAMPLE CONTENTS : 300 MM NA SODIUM CHLORIDE, 50 MM REMARK 210 NA SODIUM PHOSPHATE, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : HSQC; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D H(CCO)NH; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D REMARK 210 HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 10 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 31 -21.77 80.82 REMARK 500 1 ASN A 41 50.66 -111.08 REMARK 500 1 THR A 58 -31.59 -150.54 REMARK 500 1 THR A 59 18.61 54.72 REMARK 500 1 ASN A 63 -69.19 -93.65 REMARK 500 1 CYS A 83 -59.57 68.28 REMARK 500 2 PRO A 30 31.17 -73.21 REMARK 500 2 SER A 35 -78.61 -41.74 REMARK 500 2 ALA A 57 -77.29 -103.63 REMARK 500 2 SER A 60 -79.68 -76.85 REMARK 500 2 ARG A 62 -172.28 64.61 REMARK 500 3 PRO A 30 -170.68 -67.04 REMARK 500 3 LYS A 31 -13.44 75.58 REMARK 500 3 SER A 35 -73.81 -50.05 REMARK 500 3 ASN A 41 50.86 -112.08 REMARK 500 3 ALA A 57 -60.70 -91.41 REMARK 500 3 THR A 58 -30.33 -149.42 REMARK 500 3 THR A 59 -50.81 69.73 REMARK 500 4 PRO A 30 46.59 -71.36 REMARK 500 4 THR A 32 139.15 76.76 REMARK 500 4 SER A 35 -89.99 -69.76 REMARK 500 4 THR A 58 -25.72 -149.47 REMARK 500 4 THR A 59 -53.38 68.36 REMARK 500 4 ASN A 63 -72.35 -85.88 REMARK 500 5 THR A 32 141.08 70.23 REMARK 500 5 SER A 35 -75.31 -39.21 REMARK 500 5 ASN A 41 50.69 -113.60 REMARK 500 5 THR A 58 -36.31 -143.12 REMARK 500 5 THR A 59 18.84 54.56 REMARK 500 5 SER A 60 -73.05 -95.19 REMARK 500 6 PRO A 30 -171.36 -60.53 REMARK 500 6 LYS A 31 -11.31 76.28 REMARK 500 6 SER A 35 -80.83 -46.87 REMARK 500 6 ASN A 41 52.48 -112.69 REMARK 500 6 THR A 58 -36.85 -154.24 REMARK 500 6 THR A 59 -25.33 69.13 REMARK 500 6 ASN A 63 -81.85 -103.80 REMARK 500 7 PRO A 30 42.04 -74.43 REMARK 500 7 LYS A 31 -72.13 -96.46 REMARK 500 7 SER A 35 -72.71 -49.32 REMARK 500 7 ASN A 41 50.43 -100.76 REMARK 500 7 THR A 59 -9.26 -161.26 REMARK 500 7 MET A 80 22.93 -76.51 REMARK 500 8 PRO A 30 52.29 -68.77 REMARK 500 8 THR A 32 139.14 78.84 REMARK 500 8 SER A 35 -76.79 -38.60 REMARK 500 8 ASN A 41 50.60 -105.60 REMARK 500 8 THR A 58 140.53 70.08 REMARK 500 8 ASN A 63 82.83 70.49 REMARK 500 8 MET A 80 22.56 -75.49 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 TYR A 19 0.06 SIDE CHAIN REMARK 500 6 TYR A 19 0.05 SIDE CHAIN REMARK 500 8 TYR A 19 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34024 RELATED DB: BMRB DBREF 5LGM A 16 84 UNP P03787 V5557_BPT7 101 169 SEQADV 5LGM ALA A 57 UNP P03787 LEU 142 CONFLICT SEQRES 1 A 69 MET SER ASP TYR LEU LYS VAL LEU GLN ALA ILE LYS SER SEQRES 2 A 69 CYS PRO LYS THR PHE GLN SER ASN TYR VAL ARG ASN ASN SEQRES 3 A 69 ALA SER LEU VAL ALA GLU ALA ALA SER ARG GLY HIS ILE SEQRES 4 A 69 SER CYS ALA THR THR SER GLY ARG ASN GLY GLY ALA TRP SEQRES 5 A 69 GLU ILE THR ALA SER GLY THR ARG PHE LEU LYS ARG MET SEQRES 6 A 69 GLY GLY CYS VAL HELIX 1 AA1 MET A 16 CYS A 29 1 14 HELIX 2 AA2 ASN A 36 ASN A 41 1 6 HELIX 3 AA3 ASN A 41 GLU A 47 1 7 HELIX 4 AA4 GLU A 47 GLY A 52 1 6 HELIX 5 AA5 SER A 72 ARG A 79 1 8 SHEET 1 AA1 2 SER A 55 CYS A 56 0 SHEET 2 AA1 2 TRP A 67 GLU A 68 -1 O GLU A 68 N SER A 55 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1