HEADER ISOMERASE 11-JUL-16 5LHE TITLE PHOSPHORIBOSYL ANTHRANILATE ISOMERASE FROM THERMOCOCCUS KODAKARAENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-(5'-PHOSPHORIBOSYL)ANTHRANILATE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PRAI; COMPND 5 EC: 5.3.1.24; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS (STRAIN ATCC BAA-918 SOURCE 3 / JCM 12380 / KOD1); SOURCE 4 ORGANISM_TAXID: 69014; SOURCE 5 GENE: TRPF, TK0256; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-28A; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: TKTRPF-PET-28 KEYWDS TRYPTOPHAN BIOSYNTHESIS, TIM BARREL, PROTEIN STABILITY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PERVEEN,N.RASHID,A.C.PAPAGEORGIOU REVDAT 3 10-JAN-24 5LHE 1 LINK REVDAT 2 28-DEC-16 5LHE 1 JRNL REVDAT 1 09-NOV-16 5LHE 0 JRNL AUTH S.PERVEEN,N.RASHID,A.C.PAPAGEORGIOU JRNL TITL CRYSTAL STRUCTURE OF A PHOSPHORIBOSYL ANTHRANILATE ISOMERASE JRNL TITL 2 FROM THE HYPERTHERMOPHILIC ARCHAEON THERMOCOCCUS JRNL TITL 3 KODAKARAENSIS. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 72 804 2016 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 27827353 JRNL DOI 10.1107/S2053230X16015223 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 15340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.7225 - 3.1617 0.91 3050 178 0.1896 0.2016 REMARK 3 2 3.1617 - 2.5103 0.91 2969 158 0.2362 0.2999 REMARK 3 3 2.5103 - 2.1932 0.90 2899 149 0.2452 0.3417 REMARK 3 4 2.1932 - 1.9928 0.88 2846 142 0.2446 0.3368 REMARK 3 5 1.9928 - 1.8500 0.88 2822 127 0.2519 0.3029 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1640 REMARK 3 ANGLE : 1.128 2219 REMARK 3 CHIRALITY : 0.042 255 REMARK 3 PLANARITY : 0.005 286 REMARK 3 DIHEDRAL : 13.719 625 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:34) REMARK 3 ORIGIN FOR THE GROUP (A): 97.8051 21.5467 8.8010 REMARK 3 T TENSOR REMARK 3 T11: 0.1495 T22: 0.2092 REMARK 3 T33: 0.1977 T12: -0.0632 REMARK 3 T13: -0.0554 T23: 0.0684 REMARK 3 L TENSOR REMARK 3 L11: 1.5547 L22: 1.4026 REMARK 3 L33: 0.8872 L12: -0.1311 REMARK 3 L13: 0.0387 L23: -0.3489 REMARK 3 S TENSOR REMARK 3 S11: 0.0325 S12: -0.1814 S13: -0.0575 REMARK 3 S21: -0.2717 S22: 0.2702 S23: 0.2476 REMARK 3 S31: 0.1104 S32: -0.3390 S33: -0.0736 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 35:45) REMARK 3 ORIGIN FOR THE GROUP (A): 107.2581 16.9867 3.6473 REMARK 3 T TENSOR REMARK 3 T11: 0.1721 T22: 0.1647 REMARK 3 T33: 0.1687 T12: -0.0317 REMARK 3 T13: 0.0284 T23: -0.0383 REMARK 3 L TENSOR REMARK 3 L11: 3.8338 L22: 6.5576 REMARK 3 L33: 5.2103 L12: 2.2722 REMARK 3 L13: -2.3096 L23: -3.5264 REMARK 3 S TENSOR REMARK 3 S11: -0.1202 S12: 0.0012 S13: 0.0509 REMARK 3 S21: -0.5338 S22: -0.1376 S23: -0.3814 REMARK 3 S31: 0.3256 S32: 0.1755 S33: -0.0714 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 46:78) REMARK 3 ORIGIN FOR THE GROUP (A): 109.8207 26.0226 7.5998 REMARK 3 T TENSOR REMARK 3 T11: 0.1199 T22: 0.1248 REMARK 3 T33: 0.2059 T12: -0.0106 REMARK 3 T13: 0.0201 T23: 0.0371 REMARK 3 L TENSOR REMARK 3 L11: 1.2765 L22: 1.5402 REMARK 3 L33: 1.5297 L12: 0.3408 REMARK 3 L13: -0.4269 L23: 0.4807 REMARK 3 S TENSOR REMARK 3 S11: 0.2601 S12: 0.0736 S13: 0.1244 REMARK 3 S21: -0.3574 S22: -0.1470 S23: -0.4906 REMARK 3 S31: -0.1679 S32: 0.0360 S33: -0.0351 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 79:107) REMARK 3 ORIGIN FOR THE GROUP (A): 112.8949 28.9212 18.5957 REMARK 3 T TENSOR REMARK 3 T11: 0.1773 T22: 0.1370 REMARK 3 T33: 0.2390 T12: -0.0332 REMARK 3 T13: -0.0347 T23: 0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.2430 L22: 0.3123 REMARK 3 L33: 1.4655 L12: 0.2402 REMARK 3 L13: -0.6963 L23: -0.2553 REMARK 3 S TENSOR REMARK 3 S11: 0.1860 S12: -0.1190 S13: 0.1915 REMARK 3 S21: 0.2674 S22: -0.1534 S23: -0.2562 REMARK 3 S31: -0.3657 S32: 0.0339 S33: 0.0105 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 108:115) REMARK 3 ORIGIN FOR THE GROUP (A): 104.8289 18.5574 39.6037 REMARK 3 T TENSOR REMARK 3 T11: 0.5698 T22: 0.3395 REMARK 3 T33: 0.3507 T12: 0.0139 REMARK 3 T13: -0.0961 T23: 0.0577 REMARK 3 L TENSOR REMARK 3 L11: 0.8839 L22: 0.3980 REMARK 3 L33: 0.9915 L12: 0.3410 REMARK 3 L13: 0.2653 L23: 0.5929 REMARK 3 S TENSOR REMARK 3 S11: 0.2518 S12: -0.5302 S13: -0.5532 REMARK 3 S21: 0.1038 S22: -0.0442 S23: -0.3896 REMARK 3 S31: 0.6413 S32: 0.6112 S33: -0.0652 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 116:135) REMARK 3 ORIGIN FOR THE GROUP (A): 107.6728 28.6811 28.4491 REMARK 3 T TENSOR REMARK 3 T11: 0.3413 T22: 0.3158 REMARK 3 T33: 0.0753 T12: -0.1451 REMARK 3 T13: -0.0913 T23: -0.0330 REMARK 3 L TENSOR REMARK 3 L11: 1.2611 L22: 0.9865 REMARK 3 L33: 1.5198 L12: 0.6316 REMARK 3 L13: -0.0741 L23: 0.3202 REMARK 3 S TENSOR REMARK 3 S11: 0.2103 S12: -0.4724 S13: -0.1291 REMARK 3 S21: 0.3247 S22: -0.0019 S23: -0.0921 REMARK 3 S31: 0.0180 S32: 0.2864 S33: 0.0122 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 136:201) REMARK 3 ORIGIN FOR THE GROUP (A): 93.6300 19.5211 23.4727 REMARK 3 T TENSOR REMARK 3 T11: 0.2435 T22: 0.2248 REMARK 3 T33: 0.1490 T12: -0.0750 REMARK 3 T13: 0.0552 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.4659 L22: 1.4971 REMARK 3 L33: 1.3547 L12: -0.0193 REMARK 3 L13: 0.1850 L23: -0.1458 REMARK 3 S TENSOR REMARK 3 S11: 0.0183 S12: -0.0138 S13: 0.0221 REMARK 3 S21: 0.3904 S22: 0.0898 S23: 0.4065 REMARK 3 S31: 0.0198 S32: -0.3741 S33: -0.0393 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 202:208) REMARK 3 ORIGIN FOR THE GROUP (A): 83.9856 24.9881 18.1924 REMARK 3 T TENSOR REMARK 3 T11: 0.0377 T22: 0.2877 REMARK 3 T33: 0.8458 T12: -0.0590 REMARK 3 T13: 0.1484 T23: 0.1656 REMARK 3 L TENSOR REMARK 3 L11: 1.9997 L22: 0.2740 REMARK 3 L33: 1.1960 L12: 0.6867 REMARK 3 L13: 0.1160 L23: 0.2510 REMARK 3 S TENSOR REMARK 3 S11: 0.0820 S12: -0.0837 S13: 0.5975 REMARK 3 S21: -0.0423 S22: -0.0777 S23: 0.2787 REMARK 3 S31: -0.2369 S32: -0.2517 S33: -0.2557 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LHE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96598 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15362 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 38.310 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.41400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4AAJ REMARK 200 REMARK 200 REMARK: RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 8, 0.2 M SODIUM REMARK 280 FORMATE, 12% PEG 4000, PH 8.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.34800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 14.54800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.34800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 14.54800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 302 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 424 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 563 O HOH A 569 1.80 REMARK 500 O HOH A 518 O HOH A 530 1.86 REMARK 500 O HOH A 552 O HOH A 566 2.03 REMARK 500 O HOH A 498 O HOH A 537 2.03 REMARK 500 OE2 GLU A 109 O HOH A 401 2.06 REMARK 500 O ARG A 108 O HOH A 402 2.07 REMARK 500 O HOH A 495 O HOH A 499 2.07 REMARK 500 O HOH A 433 O HOH A 569 2.09 REMARK 500 O HOH A 405 O HOH A 466 2.11 REMARK 500 OE2 GLU A 45 O HOH A 403 2.12 REMARK 500 OD2 ASP A 130 O HOH A 404 2.12 REMARK 500 O VAL A 2 O HOH A 405 2.13 REMARK 500 O HOH A 450 O HOH A 488 2.13 REMARK 500 O HOH A 519 O HOH A 574 2.15 REMARK 500 OE1 GLU A 71 O HOH A 406 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 403 O HOH A 472 4745 2.19 REMARK 500 O HOH A 520 O HOH A 546 4755 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 3 -153.04 -119.12 REMARK 500 ASP A 83 47.57 -81.89 REMARK 500 SER A 184 -86.94 -125.99 REMARK 500 ARG A 206 68.26 -54.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 582 DISTANCE = 6.14 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 417 O REMARK 620 2 HOH A 498 O 64.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 476 O REMARK 620 2 HOH A 476 O 99.6 REMARK 620 3 HOH A 544 O 64.1 134.5 REMARK 620 4 HOH A 544 O 136.3 63.4 155.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 DBREF 5LHE A 2 208 UNP Q9YGB1 TRPF_THEKO 2 208 SEQRES 1 A 207 VAL GLU PHE VAL LYS ILE CYS GLY VAL LYS THR MET ASP SEQRES 2 A 207 GLU LEU ARG LEU VAL GLU ARG TYR ALA ASP ALA THR GLY SEQRES 3 A 207 VAL VAL VAL ASN SER ARG SER LYS ARG LYS VAL PRO LEU SEQRES 4 A 207 LYS THR ALA ALA GLU LEU ILE GLU MET ALA GLU ILE PRO SEQRES 5 A 207 ILE TYR LEU VAL SER THR MET LYS THR PHE PRO GLU TRP SEQRES 6 A 207 ALA ASN ALA VAL GLU LYS THR GLY ALA GLU TYR ILE GLN SEQRES 7 A 207 VAL HIS SER ASP MET HIS PRO LYS ALA VAL ASN ARG LEU SEQRES 8 A 207 LYS ASP GLU TYR GLY VAL SER VAL MET LYS ALA PHE MET SEQRES 9 A 207 VAL PRO ARG GLU SER ASP ASP PRO ALA GLU ASP ALA GLU SEQRES 10 A 207 ARG LEU LEU GLU LEU ILE GLY GLN TYR GLU VAL ASP LYS SEQRES 11 A 207 ILE LEU LEU ASP THR GLY VAL GLY SER GLY ARG ARG HIS SEQRES 12 A 207 ASP TYR ARG VAL SER ALA ILE ILE ALA LYS GLU TYR PRO SEQRES 13 A 207 ILE VAL LEU ALA GLY GLY LEU THR PRO GLU ASN VAL GLY SEQRES 14 A 207 GLU ALA ILE ARG TRP VAL LYS PRO ALA GLY VAL ASP VAL SEQRES 15 A 207 SER SER GLY VAL GLU ARG ASN GLY VAL LYS ASP ARG VAL SEQRES 16 A 207 LEU ILE GLU ALA PHE MET ALA VAL VAL ARG ASN GLY HET NA A 301 1 HET NA A 302 1 HETNAM NA SODIUM ION FORMUL 2 NA 2(NA 1+) FORMUL 4 HOH *182(H2 O) HELIX 1 AA1 THR A 12 GLU A 20 1 9 HELIX 2 AA2 PRO A 39 ALA A 50 1 12 HELIX 3 AA3 THR A 62 GLY A 74 1 13 HELIX 4 AA4 HIS A 85 GLY A 97 1 13 HELIX 5 AA5 ASP A 112 GLY A 125 1 14 HELIX 6 AA6 SER A 140 ALA A 153 1 14 HELIX 7 AA7 ASN A 168 LYS A 177 1 10 HELIX 8 AA8 SER A 184 GLY A 186 5 3 HELIX 9 AA9 ASP A 194 ARG A 206 1 13 SHEET 1 AA1 9 PHE A 4 CYS A 8 0 SHEET 2 AA1 9 ALA A 25 VAL A 29 1 O ALA A 25 N ILE A 7 SHEET 3 AA1 9 ILE A 54 SER A 58 1 O TYR A 55 N THR A 26 SHEET 4 AA1 9 TYR A 77 VAL A 80 1 O GLN A 79 N LEU A 56 SHEET 5 AA1 9 SER A 99 MET A 105 1 O MET A 101 N ILE A 78 SHEET 6 AA1 9 LYS A 131 ASP A 135 1 O LEU A 133 N PHE A 104 SHEET 7 AA1 9 VAL A 159 ALA A 161 1 O ALA A 161 N LEU A 134 SHEET 8 AA1 9 GLY A 180 VAL A 183 1 O GLY A 180 N LEU A 160 SHEET 9 AA1 9 PHE A 4 CYS A 8 1 N LYS A 6 O VAL A 181 SHEET 1 AA2 2 GLU A 188 ARG A 189 0 SHEET 2 AA2 2 VAL A 192 LYS A 193 -1 O VAL A 192 N ARG A 189 LINK NA NA A 301 O HOH A 417 1555 1555 2.42 LINK NA NA A 301 O HOH A 498 1555 2755 3.13 LINK NA NA A 302 O HOH A 476 1555 1555 2.91 LINK NA NA A 302 O HOH A 476 1555 2755 2.96 LINK NA NA A 302 O HOH A 544 1555 1555 2.55 LINK NA NA A 302 O HOH A 544 1555 2755 2.56 CISPEP 1 GLU A 109 SER A 110 0 -1.30 CISPEP 2 SER A 110 ASP A 111 0 -16.68 SITE 1 AC1 5 MET A 13 TYR A 22 MET A 49 GLU A 199 SITE 2 AC1 5 HOH A 417 SITE 1 AC2 2 HOH A 476 HOH A 544 CRYST1 88.696 29.096 83.946 90.00 114.16 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011274 0.000000 0.005057 0.00000 SCALE2 0.000000 0.034369 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013056 0.00000