HEADER HYDROLASE 12-JUL-16 5LHJ TITLE BOTTROMYCIN MATURATION ENZYME BOTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE AMINOPEPTIDASE 2, CHLOROPLASTIC; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.11.-,3.4.11.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. BC16019; SOURCE 3 ORGANISM_TAXID: 1109705; SOURCE 4 GENE: BOTP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS BOTP, BOTTROMYCIN, RIPPS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KOEHNKE,G.MANN REVDAT 2 14-DEC-16 5LHJ 1 JRNL REVDAT 1 12-OCT-16 5LHJ 0 JRNL AUTH G.MANN,L.HUO,S.ADAM,B.NARDONE,J.VENDOME,N.J.WESTWOOD, JRNL AUTH 2 R.MULLER,J.KOEHNKE JRNL TITL STRUCTURE AND SUBSTRATE RECOGNITION OF THE BOTTROMYCIN JRNL TITL 2 MATURATION ENZYME BOTP. JRNL REF CHEMBIOCHEM V. 17 2286 2016 JRNL REFN ESSN 1439-7633 JRNL PMID 27653442 JRNL DOI 10.1002/CBIC.201600406 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 64571 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3440 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4665 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2330 REMARK 3 BIN FREE R VALUE SET COUNT : 263 REMARK 3 BIN FREE R VALUE : 0.2490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3250 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 484 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.40000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : 1.29000 REMARK 3 B12 (A**2) : -0.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.428 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3325 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3243 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4528 ; 1.301 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7402 ; 0.925 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 448 ; 5.696 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;26.560 ;21.385 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 476 ;10.876 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;15.359 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 539 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3822 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 739 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1795 ; 0.888 ; 1.843 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1794 ; 0.886 ; 1.842 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2236 ; 1.535 ; 2.751 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2237 ; 1.535 ; 2.753 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1530 ; 1.171 ; 2.051 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1530 ; 1.170 ; 2.051 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2291 ; 1.970 ; 2.996 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4061 ; 7.473 ;17.775 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3726 ; 6.421 ;15.709 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): -27.7656 -58.3138 -22.2757 REMARK 3 T TENSOR REMARK 3 T11: 0.0263 T22: 0.0737 REMARK 3 T33: 0.0341 T12: 0.0288 REMARK 3 T13: -0.0180 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 0.2233 L22: 1.7191 REMARK 3 L33: 0.6457 L12: 0.5619 REMARK 3 L13: 0.1087 L23: 0.6861 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: 0.0168 S13: -0.0330 REMARK 3 S21: -0.0766 S22: 0.0338 S23: -0.0732 REMARK 3 S31: -0.0717 S32: 0.0399 S33: -0.0312 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 142 REMARK 3 ORIGIN FOR THE GROUP (A): -34.7477 -50.3049 -11.8919 REMARK 3 T TENSOR REMARK 3 T11: 0.0267 T22: 0.0603 REMARK 3 T33: 0.0513 T12: 0.0237 REMARK 3 T13: -0.0252 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 3.1729 L22: 0.6884 REMARK 3 L33: 1.0293 L12: 0.7614 REMARK 3 L13: -1.5365 L23: -0.6182 REMARK 3 S TENSOR REMARK 3 S11: -0.0205 S12: 0.0275 S13: -0.1051 REMARK 3 S21: 0.0801 S22: 0.0288 S23: -0.0507 REMARK 3 S31: 0.0118 S32: 0.0597 S33: -0.0083 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 175 REMARK 3 ORIGIN FOR THE GROUP (A): -33.1021 -53.6440 -6.7109 REMARK 3 T TENSOR REMARK 3 T11: 0.0433 T22: 0.1241 REMARK 3 T33: 0.0602 T12: 0.0591 REMARK 3 T13: -0.0260 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 1.1797 L22: 0.1984 REMARK 3 L33: 0.1593 L12: 0.2055 REMARK 3 L13: 0.0166 L23: 0.1501 REMARK 3 S TENSOR REMARK 3 S11: -0.0646 S12: -0.1014 S13: -0.0036 REMARK 3 S21: 0.0607 S22: 0.1163 S23: -0.0147 REMARK 3 S31: 0.0766 S32: 0.1130 S33: -0.0516 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 176 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): -53.6173 -38.2560 2.7003 REMARK 3 T TENSOR REMARK 3 T11: 0.0632 T22: 0.0575 REMARK 3 T33: 0.0309 T12: 0.0170 REMARK 3 T13: -0.0012 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 0.4699 L22: 0.2789 REMARK 3 L33: 0.1998 L12: 0.0356 REMARK 3 L13: 0.0673 L23: 0.0678 REMARK 3 S TENSOR REMARK 3 S11: -0.0916 S12: -0.0394 S13: -0.0134 REMARK 3 S21: 0.0836 S22: 0.0307 S23: 0.0142 REMARK 3 S31: 0.0168 S32: 0.0138 S33: 0.0609 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 274 A 307 REMARK 3 ORIGIN FOR THE GROUP (A): -43.5769 -37.9380 -2.4049 REMARK 3 T TENSOR REMARK 3 T11: 0.1113 T22: 0.0770 REMARK 3 T33: 0.0794 T12: 0.0332 REMARK 3 T13: 0.0074 T23: 0.0309 REMARK 3 L TENSOR REMARK 3 L11: 0.1642 L22: 0.3960 REMARK 3 L33: 0.5156 L12: -0.2435 REMARK 3 L13: 0.2518 L23: -0.4400 REMARK 3 S TENSOR REMARK 3 S11: -0.0573 S12: 0.0265 S13: 0.0477 REMARK 3 S21: 0.0278 S22: -0.0733 S23: -0.0971 REMARK 3 S31: 0.0162 S32: 0.0961 S33: 0.1306 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 308 A 499 REMARK 3 ORIGIN FOR THE GROUP (A): -53.9633 -29.9714 -10.7723 REMARK 3 T TENSOR REMARK 3 T11: 0.0425 T22: 0.0410 REMARK 3 T33: 0.0335 T12: -0.0023 REMARK 3 T13: -0.0286 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.2985 L22: 0.2649 REMARK 3 L33: 0.1901 L12: -0.2131 REMARK 3 L13: -0.0895 L23: -0.0624 REMARK 3 S TENSOR REMARK 3 S11: 0.0000 S12: 0.0100 S13: 0.0300 REMARK 3 S21: 0.0155 S22: -0.0295 S23: -0.0407 REMARK 3 S31: -0.0303 S32: 0.0027 S33: 0.0296 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LHJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000749. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68447 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 24.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 0.54300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350 (20 % (W/V)) AND SODIUM REMARK 280 MALONATE PH 7.0 (0.24 M), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.44800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.44800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.44800 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 50.44800 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 50.44800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 50.44800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 91140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -160.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -152.42000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -76.21000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -131.99959 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 -76.21000 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 -131.99959 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -50.44800 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 -152.42000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -50.44800 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -50.44800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1182 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ARG A 3 REMARK 465 VAL A 4 REMARK 465 VAL A 5 REMARK 465 ALA A 6 REMARK 465 GLY A 7 REMARK 465 ASP A 8 REMARK 465 VAL A 9 REMARK 465 GLY A 10 REMARK 465 THR A 11 REMARK 465 ASP A 12 REMARK 465 THR A 13 REMARK 465 PRO A 14 REMARK 465 ASP A 15 REMARK 465 LYS A 16 REMARK 465 ALA A 17 REMARK 465 GLY A 18 REMARK 465 THR A 19 REMARK 465 ALA A 20 REMARK 465 ASP A 21 REMARK 465 THR A 22 REMARK 465 ALA A 23 REMARK 465 LYS A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 465 ASP A 27 REMARK 465 THR A 28 REMARK 465 ALA A 29 REMARK 465 ASP A 30 REMARK 465 THR A 31 REMARK 465 ALA A 32 REMARK 465 SER A 33 REMARK 465 ARG A 34 REMARK 465 ARG A 149 REMARK 465 ALA A 150 REMARK 465 ALA A 151 REMARK 465 PRO A 248 REMARK 465 ASP A 249 REMARK 465 ALA A 250 REMARK 465 ASP A 251 REMARK 465 SER A 275 REMARK 465 GLY A 276 REMARK 465 GLU A 277 REMARK 465 ARG A 278 REMARK 465 HIS A 279 REMARK 465 ALA A 280 REMARK 465 GLY A 361 REMARK 465 PRO A 362 REMARK 465 HIS A 363 REMARK 465 SER A 500 REMARK 465 PRO A 501 REMARK 465 ASP A 502 REMARK 465 VAL A 503 REMARK 465 PRO A 504 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 739 O HOH A 739 12554 0.45 REMARK 500 O HOH A 702 O HOH A 702 2455 0.52 REMARK 500 O HOH A 828 O HOH A 828 10444 0.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 324 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 324 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 161 147.20 176.17 REMARK 500 ALA A 253 -20.66 81.31 REMARK 500 LEU A 272 162.46 73.76 REMARK 500 ASN A 344 53.26 -97.10 REMARK 500 ALA A 475 -129.92 49.84 REMARK 500 ALA A 485 -13.46 88.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 602 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 DBREF 5LHJ A 1 504 UNP K4MHW2 K4MHW2_9ACTN 1 504 SEQRES 1 A 504 MET THR ARG VAL VAL ALA GLY ASP VAL GLY THR ASP THR SEQRES 2 A 504 PRO ASP LYS ALA GLY THR ALA ASP THR ALA LYS ALA ALA SEQRES 3 A 504 ASP THR ALA ASP THR ALA SER ARG ALA ALA ASP VAL VAL SEQRES 4 A 504 ALA CYS GLY ARG HIS THR GLY ALA ALA VAL GLY ALA PHE SEQRES 5 A 504 SER ARG ARG ARG GLY PHE VAL ALA ARG PRO GLY GLN VAL SEQRES 6 A 504 VAL ALA GLU PRO SER ALA ASP GLY ARG ALA VAL VAL LEU SEQRES 7 A 504 ASN VAL GLY LEU GLY PRO ALA GLY SER ALA THR ALA ALA SEQRES 8 A 504 THR PHE ARG ALA ALA ALA ALA ALA SER VAL ARG ALA VAL SEQRES 9 A 504 GLY PRO ALA ARG THR LEU ARG LEU ASP LEU ALA LEU ALA SEQRES 10 A 504 ASP GLY SER GLY VAL PRO ALA ALA GLU ARG ALA ARG ALA SEQRES 11 A 504 VAL ALA GLU GLY ALA VAL LEU GLY LEU TYR ARG TYR ASP SEQRES 12 A 504 GLU TYR ARG SER ALA ARG ALA ALA SER PRO LEU ALA GLU SEQRES 13 A 504 VAL ILE VAL ALA THR PRO GLU ARG ARG ALA VAL ALA GLU SEQRES 14 A 504 GLY LEU ALA ALA ALA GLU ALA THR CYS LEU ALA ARG ASP SEQRES 15 A 504 LEU VAL ASN CYS PRO ALA GLY THR LEU THR PRO PRO ALA SEQRES 16 A 504 PHE ALA ASP ARG ILE ARG GLU LEU ALA HIS THR ALA GLY SEQRES 17 A 504 LEU ASP CYS ALA VAL TYR GLU GLY ALA GLY LEU THR GLU SEQRES 18 A 504 LEU GLY LEU THR GLY LEU THR ALA VAL GLY ARG GLY SER SEQRES 19 A 504 ALA GLU PRO PRO ARG TYR VAL GLU LEU THR TYR ASP PRO SEQRES 20 A 504 PRO ASP ALA ASP PRO ALA LEU THR VAL GLY LEU VAL GLY SEQRES 21 A 504 LYS GLY VAL THR PHE ASP SER GLY GLY LEU SER LEU LYS SEQRES 22 A 504 PRO SER GLY GLU ARG HIS ALA MET LYS ALA ASP MET GLY SEQRES 23 A 504 GLY ALA ALA ALA VAL VAL ALA ALA LEU THR ALA LEU PRO SEQRES 24 A 504 ARG LEU GLY LEU PRO LEU ARG VAL ARG GLY HIS LEU PRO SEQRES 25 A 504 LEU ALA GLU ASN MET PRO ASP GLY GLY ALA LEU ARG VAL SEQRES 26 A 504 GLY ASP VAL VAL ARG HIS LEU ASP GLY THR THR THR GLU SEQRES 27 A 504 ILE THR HIS THR ASP ASN GLU GLY ARG VAL VAL LEU ALA SEQRES 28 A 504 ASP VAL LEU VAL ARG ALA SER ARG PRO GLY PRO HIS ARG SEQRES 29 A 504 SER ASP LEU VAL VAL ASP VAL ALA THR LEU THR SER ALA SEQRES 30 A 504 ALA VAL HIS ALA LEU GLY THR ARG THR GLY ALA LEU PHE SEQRES 31 A 504 THR PRO ASP ASP ARG LEU ALA GLN THR VAL LEU ALA ALA SEQRES 32 A 504 SER GLU ARG ALA GLY GLU SER PHE CYS ARG LEU PRO LEU SEQRES 33 A 504 LEU ALA HIS GLU ARG ARG ASN LEU ARG SER ALA VAL ALA SEQRES 34 A 504 ASP ARG VAL ASN CYS SER HIS ARG HIS GLY ASP THR ILE SEQRES 35 A 504 GLN ALA ALA LEU PHE LEU GLN ASP PHE VAL ALA ALA GLY SEQRES 36 A 504 VAL PRO TRP ALA HIS LEU ASP ILE ALA ALA PRO ALA TYR SEQRES 37 A 504 ASN ASP GLU GLY PRO TYR ALA GLU VAL PRO TYR GLY GLY SEQRES 38 A 504 THR GLY PHE ALA VAL ARG THR LEU ILE GLU THR LEU ARG SEQRES 39 A 504 ALA LEU SER GLU GLY SER PRO ASP VAL PRO HET CL A 601 1 HET 1PE A 602 10 HET GOL A 603 6 HETNAM CL CHLORIDE ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETSYN 1PE PEG400 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CL CL 1- FORMUL 3 1PE C10 H22 O6 FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *484(H2 O) HELIX 1 AA1 GLY A 50 ARG A 56 1 7 HELIX 2 AA2 PRO A 84 ALA A 88 5 5 HELIX 3 AA3 THR A 89 ALA A 103 1 15 HELIX 4 AA4 LEU A 114 ALA A 117 5 4 HELIX 5 AA5 PRO A 123 TYR A 140 1 18 HELIX 6 AA6 GLU A 163 CYS A 186 1 24 HELIX 7 AA7 THR A 192 GLY A 208 1 17 HELIX 8 AA8 GLU A 215 GLU A 221 1 7 HELIX 9 AA9 LEU A 224 ARG A 232 1 9 HELIX 10 AB1 GLY A 268 LEU A 272 5 5 HELIX 11 AB2 MET A 285 GLY A 302 1 18 HELIX 12 AB3 ASN A 344 ARG A 359 1 16 HELIX 13 AB4 SER A 376 GLY A 383 1 8 HELIX 14 AB5 ASP A 393 GLY A 408 1 16 HELIX 15 AB6 LEU A 417 ARG A 425 5 9 HELIX 16 AB7 GLY A 439 ASP A 450 1 12 HELIX 17 AB8 ALA A 485 GLY A 499 1 15 SHEET 1 AA1 5 VAL A 65 PRO A 69 0 SHEET 2 AA1 5 VAL A 76 GLY A 81 -1 O VAL A 77 N GLU A 68 SHEET 3 AA1 5 VAL A 38 ARG A 43 1 N CYS A 41 O LEU A 78 SHEET 4 AA1 5 THR A 109 LEU A 112 1 O ARG A 111 N VAL A 38 SHEET 5 AA1 5 GLU A 156 VAL A 159 1 O ILE A 158 N LEU A 112 SHEET 1 AA2 4 ASP A 210 TYR A 214 0 SHEET 2 AA2 4 ARG A 239 TYR A 245 -1 O TYR A 240 N TYR A 214 SHEET 3 AA2 4 ARG A 306 ASN A 316 -1 O GLY A 309 N LEU A 243 SHEET 4 AA2 4 GLY A 262 ASP A 266 1 N PHE A 265 O ASN A 316 SHEET 1 AA3 8 ASP A 210 TYR A 214 0 SHEET 2 AA3 8 ARG A 239 TYR A 245 -1 O TYR A 240 N TYR A 214 SHEET 3 AA3 8 ARG A 306 ASN A 316 -1 O GLY A 309 N LEU A 243 SHEET 4 AA3 8 THR A 255 GLY A 260 1 N LEU A 258 O ARG A 308 SHEET 5 AA3 8 LEU A 367 ALA A 372 1 O LEU A 367 N GLY A 257 SHEET 6 AA3 8 TRP A 458 ASP A 462 1 O LEU A 461 N ASP A 370 SHEET 7 AA3 8 THR A 386 PHE A 390 -1 N ALA A 388 O ASP A 462 SHEET 8 AA3 8 SER A 410 ARG A 413 1 O SER A 410 N GLY A 387 SHEET 1 AA4 3 VAL A 328 ARG A 330 0 SHEET 2 AA4 3 THR A 336 GLU A 338 -1 O THR A 337 N VAL A 329 SHEET 3 AA4 3 ARG A 431 VAL A 432 1 O ARG A 431 N GLU A 338 SHEET 1 AA5 2 TYR A 468 ASN A 469 0 SHEET 2 AA5 2 GLY A 480 GLY A 481 -1 O GLY A 480 N ASN A 469 SITE 1 AC1 4 ASN A 344 GLY A 346 ARG A 347 HOH A 796 SITE 1 AC2 8 SER A 147 THR A 335 ARG A 421 LEU A 424 SITE 2 AC2 8 ASP A 430 ASP A 450 HOH A 749 HOH A 907 SITE 1 AC3 7 PRO A 274 HIS A 341 ASP A 343 ASN A 344 SITE 2 AC3 7 CYS A 434 ASP A 440 HOH A 954 CRYST1 152.420 152.420 100.896 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006561 0.003788 0.000000 0.00000 SCALE2 0.000000 0.007576 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009911 0.00000