HEADER HYDROLASE 12-JUL-16 5LHK TITLE BOTTROMYCIN MATURATION ENZYME BOTP IN COMPLEX WITH MN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LEUCINE AMINOPEPTIDASE 2, CHLOROPLASTIC; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.11.-,3.4.11.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP. BC16019; SOURCE 3 ORGANISM_TAXID: 1109705; SOURCE 4 GENE: BOTP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS BOTP, BOTTROMYCIN, RIPPS, PEPTIDASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KOEHNKE,S.ADAM REVDAT 2 14-DEC-16 5LHK 1 JRNL REVDAT 1 05-OCT-16 5LHK 0 JRNL AUTH G.MANN,L.HUO,S.ADAM,B.NARDONE,J.VENDOME,N.J.WESTWOOD, JRNL AUTH 2 R.MULLER,J.KOEHNKE JRNL TITL STRUCTURE AND SUBSTRATE RECOGNITION OF THE BOTTROMYCIN JRNL TITL 2 MATURATION ENZYME BOTP. JRNL REF CHEMBIOCHEM V. 17 2286 2016 JRNL REFN ESSN 1439-7633 JRNL PMID 27653442 JRNL DOI 10.1002/CBIC.201600406 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28658 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1466 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2050 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.1420 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.1910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3304 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.85000 REMARK 3 B22 (A**2) : -0.85000 REMARK 3 B33 (A**2) : 2.75000 REMARK 3 B12 (A**2) : -0.42000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.060 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3364 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3261 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4585 ; 1.260 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7441 ; 0.920 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 452 ; 5.963 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;24.986 ;21.407 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 482 ;13.088 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;17.790 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 540 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3894 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 756 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1817 ; 1.836 ; 2.762 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1816 ; 1.836 ; 2.760 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2266 ; 2.304 ; 4.132 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2267 ; 2.304 ; 4.133 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1547 ; 2.363 ; 3.168 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1542 ; 2.358 ; 3.166 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2316 ; 2.661 ; 4.601 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3917 ; 3.951 ;23.387 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3755 ; 3.417 ;22.713 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6625 ; 1.532 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 104 ;26.072 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6797 ; 8.220 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 498 REMARK 3 ORIGIN FOR THE GROUP (A): 29.8128 91.5301 41.1250 REMARK 3 T TENSOR REMARK 3 T11: 0.0017 T22: 0.0055 REMARK 3 T33: 0.0023 T12: -0.0003 REMARK 3 T13: -0.0011 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.0571 L22: 0.0484 REMARK 3 L33: 0.0012 L12: -0.0431 REMARK 3 L13: -0.0079 L23: 0.0064 REMARK 3 S TENSOR REMARK 3 S11: -0.0049 S12: 0.0018 S13: -0.0026 REMARK 3 S21: 0.0002 S22: 0.0045 S23: 0.0030 REMARK 3 S31: 0.0005 S32: -0.0004 S33: 0.0004 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LHK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000750. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.89 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30149 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 47.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 37.80 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 35.70 REMARK 200 R MERGE FOR SHELL (I) : 0.73600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000 (10 % W/V)), MES PH 6.5 (0.1 REMARK 280 M), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 50.59500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.59500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.59500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 50.59500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 50.59500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 50.59500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 89990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 75.75500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 131.21151 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -75.75500 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 131.21151 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 75.75500 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 131.21151 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 50.59500 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 50.59500 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -75.75500 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 131.21151 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 50.59500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 707 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 931 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ARG A 3 REMARK 465 VAL A 4 REMARK 465 VAL A 5 REMARK 465 ALA A 6 REMARK 465 GLY A 7 REMARK 465 ASP A 8 REMARK 465 VAL A 9 REMARK 465 GLY A 10 REMARK 465 THR A 11 REMARK 465 ASP A 12 REMARK 465 THR A 13 REMARK 465 PRO A 14 REMARK 465 ASP A 15 REMARK 465 LYS A 16 REMARK 465 ALA A 17 REMARK 465 GLY A 18 REMARK 465 THR A 19 REMARK 465 ALA A 20 REMARK 465 ASP A 21 REMARK 465 THR A 22 REMARK 465 ALA A 23 REMARK 465 LYS A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 465 ASP A 27 REMARK 465 THR A 28 REMARK 465 ALA A 29 REMARK 465 ASP A 30 REMARK 465 THR A 31 REMARK 465 ALA A 32 REMARK 465 SER A 33 REMARK 465 ARG A 34 REMARK 465 ALA A 148 REMARK 465 ARG A 149 REMARK 465 ALA A 150 REMARK 465 ALA A 151 REMARK 465 SER A 152 REMARK 465 ALA A 250 REMARK 465 ASP A 251 REMARK 465 PRO A 252 REMARK 465 ALA A 253 REMARK 465 GLY A 499 REMARK 465 SER A 500 REMARK 465 PRO A 501 REMARK 465 ASP A 502 REMARK 465 VAL A 503 REMARK 465 PRO A 504 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 421 O HOH A 701 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 36 52.83 38.57 REMARK 500 ASP A 37 -68.45 60.73 REMARK 500 THR A 161 151.04 179.76 REMARK 500 ASN A 344 56.64 -98.00 REMARK 500 HIS A 363 -27.15 72.09 REMARK 500 ARG A 364 108.35 73.91 REMARK 500 ALA A 475 -125.08 52.68 REMARK 500 ALA A 485 -14.19 85.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1028 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A1029 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH A1030 DISTANCE = 7.67 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 261 NZ REMARK 620 2 ASP A 266 OD2 176.6 REMARK 620 3 ASP A 284 OD2 93.8 84.4 REMARK 620 4 GLU A 345 OE2 96.8 86.2 92.8 REMARK 620 5 HOH A 734 O 94.4 86.3 156.4 108.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 602 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 266 OD2 REMARK 620 2 ASP A 343 O 172.5 REMARK 620 3 ASP A 343 OD1 100.1 82.9 REMARK 620 4 GLU A 345 OE1 89.8 82.6 114.6 REMARK 620 5 HOH A 734 O 88.8 92.1 149.7 94.2 REMARK 620 6 HOH A 939 O 101.1 86.0 84.5 156.2 65.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BCT A 603 DBREF 5LHK A 1 504 UNP K4MHW2 K4MHW2_9ACTN 1 504 SEQRES 1 A 504 MET THR ARG VAL VAL ALA GLY ASP VAL GLY THR ASP THR SEQRES 2 A 504 PRO ASP LYS ALA GLY THR ALA ASP THR ALA LYS ALA ALA SEQRES 3 A 504 ASP THR ALA ASP THR ALA SER ARG ALA ALA ASP VAL VAL SEQRES 4 A 504 ALA CYS GLY ARG HIS THR GLY ALA ALA VAL GLY ALA PHE SEQRES 5 A 504 SER ARG ARG ARG GLY PHE VAL ALA ARG PRO GLY GLN VAL SEQRES 6 A 504 VAL ALA GLU PRO SER ALA ASP GLY ARG ALA VAL VAL LEU SEQRES 7 A 504 ASN VAL GLY LEU GLY PRO ALA GLY SER ALA THR ALA ALA SEQRES 8 A 504 THR PHE ARG ALA ALA ALA ALA ALA SER VAL ARG ALA VAL SEQRES 9 A 504 GLY PRO ALA ARG THR LEU ARG LEU ASP LEU ALA LEU ALA SEQRES 10 A 504 ASP GLY SER GLY VAL PRO ALA ALA GLU ARG ALA ARG ALA SEQRES 11 A 504 VAL ALA GLU GLY ALA VAL LEU GLY LEU TYR ARG TYR ASP SEQRES 12 A 504 GLU TYR ARG SER ALA ARG ALA ALA SER PRO LEU ALA GLU SEQRES 13 A 504 VAL ILE VAL ALA THR PRO GLU ARG ARG ALA VAL ALA GLU SEQRES 14 A 504 GLY LEU ALA ALA ALA GLU ALA THR CYS LEU ALA ARG ASP SEQRES 15 A 504 LEU VAL ASN CYS PRO ALA GLY THR LEU THR PRO PRO ALA SEQRES 16 A 504 PHE ALA ASP ARG ILE ARG GLU LEU ALA HIS THR ALA GLY SEQRES 17 A 504 LEU ASP CYS ALA VAL TYR GLU GLY ALA GLY LEU THR GLU SEQRES 18 A 504 LEU GLY LEU THR GLY LEU THR ALA VAL GLY ARG GLY SER SEQRES 19 A 504 ALA GLU PRO PRO ARG TYR VAL GLU LEU THR TYR ASP PRO SEQRES 20 A 504 PRO ASP ALA ASP PRO ALA LEU THR VAL GLY LEU VAL GLY SEQRES 21 A 504 LYS GLY VAL THR PHE ASP SER GLY GLY LEU SER LEU LYS SEQRES 22 A 504 PRO SER GLY GLU ARG HIS ALA MET LYS ALA ASP MET GLY SEQRES 23 A 504 GLY ALA ALA ALA VAL VAL ALA ALA LEU THR ALA LEU PRO SEQRES 24 A 504 ARG LEU GLY LEU PRO LEU ARG VAL ARG GLY HIS LEU PRO SEQRES 25 A 504 LEU ALA GLU ASN MET PRO ASP GLY GLY ALA LEU ARG VAL SEQRES 26 A 504 GLY ASP VAL VAL ARG HIS LEU ASP GLY THR THR THR GLU SEQRES 27 A 504 ILE THR HIS THR ASP ASN GLU GLY ARG VAL VAL LEU ALA SEQRES 28 A 504 ASP VAL LEU VAL ARG ALA SER ARG PRO GLY PRO HIS ARG SEQRES 29 A 504 SER ASP LEU VAL VAL ASP VAL ALA THR LEU THR SER ALA SEQRES 30 A 504 ALA VAL HIS ALA LEU GLY THR ARG THR GLY ALA LEU PHE SEQRES 31 A 504 THR PRO ASP ASP ARG LEU ALA GLN THR VAL LEU ALA ALA SEQRES 32 A 504 SER GLU ARG ALA GLY GLU SER PHE CYS ARG LEU PRO LEU SEQRES 33 A 504 LEU ALA HIS GLU ARG ARG ASN LEU ARG SER ALA VAL ALA SEQRES 34 A 504 ASP ARG VAL ASN CYS SER HIS ARG HIS GLY ASP THR ILE SEQRES 35 A 504 GLN ALA ALA LEU PHE LEU GLN ASP PHE VAL ALA ALA GLY SEQRES 36 A 504 VAL PRO TRP ALA HIS LEU ASP ILE ALA ALA PRO ALA TYR SEQRES 37 A 504 ASN ASP GLU GLY PRO TYR ALA GLU VAL PRO TYR GLY GLY SEQRES 38 A 504 THR GLY PHE ALA VAL ARG THR LEU ILE GLU THR LEU ARG SEQRES 39 A 504 ALA LEU SER GLU GLY SER PRO ASP VAL PRO HET MN A 601 1 HET MN A 602 1 HET BCT A 603 4 HETNAM MN MANGANESE (II) ION HETNAM BCT BICARBONATE ION FORMUL 2 MN 2(MN 2+) FORMUL 4 BCT C H O3 1- FORMUL 5 HOH *330(H2 O) HELIX 1 AA1 GLY A 50 ARG A 56 1 7 HELIX 2 AA2 PRO A 84 ALA A 88 5 5 HELIX 3 AA3 THR A 89 ALA A 103 1 15 HELIX 4 AA4 LEU A 114 ALA A 117 5 4 HELIX 5 AA5 PRO A 123 TYR A 140 1 18 HELIX 6 AA6 GLU A 163 CYS A 186 1 24 HELIX 7 AA7 THR A 192 GLY A 208 1 17 HELIX 8 AA8 GLU A 215 LEU A 222 1 8 HELIX 9 AA9 LEU A 224 ARG A 232 1 9 HELIX 10 AB1 ALA A 280 ASP A 284 5 5 HELIX 11 AB2 MET A 285 GLY A 302 1 18 HELIX 12 AB3 ASN A 344 ARG A 359 1 16 HELIX 13 AB4 ALA A 377 GLY A 383 1 7 HELIX 14 AB5 ASP A 393 GLY A 408 1 16 HELIX 15 AB6 LEU A 417 ARG A 425 5 9 HELIX 16 AB7 GLY A 439 ASP A 450 1 12 HELIX 17 AB8 ALA A 485 GLU A 498 1 14 SHEET 1 AA1 5 VAL A 65 PRO A 69 0 SHEET 2 AA1 5 VAL A 76 GLY A 81 -1 O VAL A 77 N GLU A 68 SHEET 3 AA1 5 VAL A 38 ARG A 43 1 N CYS A 41 O LEU A 78 SHEET 4 AA1 5 THR A 109 LEU A 112 1 O ARG A 111 N ALA A 40 SHEET 5 AA1 5 GLU A 156 VAL A 159 1 O ILE A 158 N LEU A 112 SHEET 1 AA2 4 ASP A 210 TYR A 214 0 SHEET 2 AA2 4 ARG A 239 TYR A 245 -1 O TYR A 240 N TYR A 214 SHEET 3 AA2 4 ARG A 306 ASN A 316 -1 O GLY A 309 N LEU A 243 SHEET 4 AA2 4 GLY A 262 ASP A 266 1 N PHE A 265 O ASN A 316 SHEET 1 AA3 8 ASP A 210 TYR A 214 0 SHEET 2 AA3 8 ARG A 239 TYR A 245 -1 O TYR A 240 N TYR A 214 SHEET 3 AA3 8 ARG A 306 ASN A 316 -1 O GLY A 309 N LEU A 243 SHEET 4 AA3 8 THR A 255 GLY A 260 1 N LEU A 258 O ARG A 308 SHEET 5 AA3 8 LEU A 367 ALA A 372 1 O LEU A 367 N GLY A 257 SHEET 6 AA3 8 TRP A 458 ASP A 462 1 O LEU A 461 N ASP A 370 SHEET 7 AA3 8 THR A 386 PHE A 390 -1 N PHE A 390 O HIS A 460 SHEET 8 AA3 8 SER A 410 ARG A 413 1 O SER A 410 N GLY A 387 SHEET 1 AA4 3 VAL A 328 ARG A 330 0 SHEET 2 AA4 3 THR A 336 GLU A 338 -1 O THR A 337 N VAL A 329 SHEET 3 AA4 3 ARG A 431 VAL A 432 1 O ARG A 431 N GLU A 338 SHEET 1 AA5 2 TYR A 468 ASN A 469 0 SHEET 2 AA5 2 GLY A 480 GLY A 481 -1 O GLY A 480 N ASN A 469 LINK NZ LYS A 261 MN MN A 601 1555 1555 2.40 LINK OD2 ASP A 266 MN MN A 602 1555 1555 2.15 LINK OD2 ASP A 266 MN MN A 601 1555 1555 2.38 LINK OD2 ASP A 284 MN MN A 601 1555 1555 2.02 LINK O ASP A 343 MN MN A 602 1555 1555 2.15 LINK OD1 ASP A 343 MN MN A 602 1555 1555 2.17 LINK OE1 GLU A 345 MN MN A 602 1555 1555 2.22 LINK OE2 GLU A 345 MN MN A 601 1555 1555 2.07 LINK MN MN A 601 O HOH A 734 1555 1555 2.21 LINK MN MN A 602 O HOH A 734 1555 1555 2.33 LINK MN MN A 602 O HOH A 939 1555 1555 2.55 SITE 1 AC1 8 LYS A 261 ASP A 266 ASP A 284 GLU A 345 SITE 2 AC1 8 MN A 602 BCT A 603 HOH A 734 HOH A 868 SITE 1 AC2 6 ASP A 266 ASP A 343 GLU A 345 MN A 601 SITE 2 AC2 6 HOH A 734 HOH A 939 SITE 1 AC3 8 LYS A 261 ASN A 344 GLU A 345 GLY A 346 SITE 2 AC3 8 ARG A 347 LEU A 374 MN A 601 HOH A 734 CRYST1 151.510 151.510 101.190 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006600 0.003811 0.000000 0.00000 SCALE2 0.000000 0.007621 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009882 0.00000