HEADER SIGNALING PROTEIN 12-JUL-16 5LHO OBSLTE 15-FEB-23 5LHO 5LVZ TITLE CRYSTAL STRUCTURE OF YEAST 14-3-3 PROTEIN (BMH1) FROM LACHANCEA TITLE 2 THERMOTOLERANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: KLTH0G14146P; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACHANCEA THERMOTOLERANS; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 381046; SOURCE 5 GENE: KLTH0G14146G; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS 14-3-3, BMH1, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.KLIMA,E.BOURA REVDAT 4 15-FEB-23 5LHO 1 OBSLTE REVDAT 3 21-DEC-16 5LHO 1 JRNL REVDAT 2 09-NOV-16 5LHO 1 JRNL REVDAT 1 20-JUL-16 5LHO 0 JRNL AUTH A.EISENREICHOVA,M.KLIMA,E.BOURA JRNL TITL CRYSTAL STRUCTURES OF A YEAST 14-3-3 PROTEIN FROM LACHANCEA JRNL TITL 2 THERMOTOLERANS IN THE UNLIGANDED FORM AND BOUND TO A HUMAN JRNL TITL 3 LIPID KINASE PI4KB-DERIVED PEPTIDE REVEAL HIGH EVOLUTIONARY JRNL TITL 4 CONSERVATION. JRNL REF ACTA CRYSTALLOGR F STRUCT V. 72 799 2016 JRNL REF 2 BIOL COMMUN JRNL REFN ESSN 2053-230X JRNL PMID 27827352 JRNL DOI 10.1107/S2053230X16015053 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX VERSION 1.9-1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 23276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 2.0200 - 1.9500 1.00 2261 113 0.3008 0.3408 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LHO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000753. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS VERSION OCT 15, 2015 REMARK 200 BUILT=20151231 REMARK 200 DATA SCALING SOFTWARE : XDS VERSION OCT 15, 2015 REMARK 200 BUILT=20151231 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23282 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 44.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.400 REMARK 200 R MERGE (I) : 0.09166 REMARK 200 R SYM (I) : 0.09166 REMARK 200 FOR THE DATA SET : 14.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 1.32300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER VERSION 2.5.6 REMARK 200 STARTING MODEL: 1A4O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 3350, 190 MM CACL2, 3% REMARK 280 GLYCEROL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.06000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.06000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 ASP A 75 REMARK 465 LYS A 76 REMARK 465 SER A 77 REMARK 465 ASP A 236 REMARK 465 MET A 237 REMARK 465 SER A 238 REMARK 465 GLU A 239 REMARK 465 ALA A 240 REMARK 465 GLY A 241 REMARK 465 GLN A 242 REMARK 465 ASP A 243 REMARK 465 GLU A 244 REMARK 465 GLN A 245 REMARK 465 GLN A 246 REMARK 465 PRO A 247 REMARK 465 ALA A 248 REMARK 465 GLU A 249 REMARK 465 GLY A 250 REMARK 465 ALA A 251 REMARK 465 GLN A 252 REMARK 465 GLU A 253 DBREF 5LHO A 1 253 UNP C5DN49 C5DN49_LACTC 1 253 SEQRES 1 A 253 MET SER GLN SER ARG GLU ASP SER VAL TYR LEU ALA LYS SEQRES 2 A 253 LEU ALA GLU GLN ALA GLU ARG TYR GLU GLU MET VAL ASP SEQRES 3 A 253 SER MET LYS ALA VAL ALA SER SER GLY GLN GLU LEU SER SEQRES 4 A 253 VAL GLU GLU ARG ASN LEU LEU SER VAL ALA TYR LYS ASN SEQRES 5 A 253 VAL ILE GLY ALA ARG ARG ALA SER TRP ARG ILE VAL SER SEQRES 6 A 253 SER ILE GLU GLN LYS GLU GLU ALA LYS ASP LYS SER GLU SEQRES 7 A 253 HIS GLN VAL LYS LEU ILE ARG ASP TYR ARG SER LYS ILE SEQRES 8 A 253 GLU THR GLU LEU THR LYS ILE CYS ASP ASP ILE LEU SER SEQRES 9 A 253 VAL LEU ASP THR HIS LEU ILE PRO SER ALA THR THR GLY SEQRES 10 A 253 GLU SER LYS VAL PHE TYR TYR LYS MET LYS GLY ASP TYR SEQRES 11 A 253 HIS ARG TYR LEU ALA GLU PHE SER SER GLY GLU VAL ARG SEQRES 12 A 253 ASP LYS ALA THR ASN ALA SER LEU GLU ALA TYR LYS THR SEQRES 13 A 253 ALA SER GLU ILE ALA THR THR GLU LEU PRO PRO THR HIS SEQRES 14 A 253 PRO ILE ARG LEU GLY LEU ALA LEU ASN PHE SER VAL PHE SEQRES 15 A 253 TYR TYR GLU ILE GLN ASN SER PRO ASP LYS ALA CYS HIS SEQRES 16 A 253 LEU ALA LYS GLN ALA PHE ASP ASP ALA ILE ALA GLU LEU SEQRES 17 A 253 ASP THR LEU SER GLU GLU SER TYR LYS ASP SER THR LEU SEQRES 18 A 253 ILE MET GLN LEU LEU ARG ASP ASN LEU THR LEU TRP THR SEQRES 19 A 253 SER ASP MET SER GLU ALA GLY GLN ASP GLU GLN GLN PRO SEQRES 20 A 253 ALA GLU GLY ALA GLN GLU FORMUL 2 HOH *36(H2 O) HELIX 1 AA1 SER A 4 ALA A 18 1 15 HELIX 2 AA2 ARG A 20 SER A 33 1 14 HELIX 3 AA3 SER A 39 ALA A 73 1 35 HELIX 4 AA4 HIS A 79 HIS A 109 1 31 HELIX 5 AA5 HIS A 109 ALA A 114 1 6 HELIX 6 AA6 THR A 116 SER A 138 1 23 HELIX 7 AA7 SER A 139 LEU A 165 1 27 HELIX 8 AA8 HIS A 169 ILE A 186 1 18 HELIX 9 AA9 SER A 189 ALA A 206 1 18 HELIX 10 AB1 GLU A 207 LEU A 211 5 5 HELIX 11 AB2 SER A 212 SER A 235 1 24 CRYST1 64.120 122.780 39.170 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015596 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025530 0.00000