HEADER HYDROLASE/ANTIBODY 12-JUL-16 5LHQ TITLE THE EGR-CMK ACTIVE SITE INHIBITED CATALYTIC DOMAIN OF MURINE TITLE 2 UROKINASE-TYPE PLASMINOGEN ACTIVATOR IN COMPLEX WITH THE ALLOSTERIC TITLE 3 INHIBITORY NANOBODY NB7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UROKINASE-TYPE PLASMINOGEN ACTIVATOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UPA; COMPND 5 EC: 3.4.21.73; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CAMELID-DERIVED ANTIBODY FRAGMENT NB7; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PLAU; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PT7; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: VICUGNA PACOS; SOURCE 12 ORGANISM_COMMON: ALPACA; SOURCE 13 ORGANISM_TAXID: 30538; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRYPSIN-LIKE SERINE PROTEASES, NANOBODY, INHIBITOR, HYDROLASE- KEYWDS 2 ANTIBODY COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.KROMANN-HANSEN,E.L.LANGE,H.P.SORENSEN,G.H.GHASSABEH,M.HUANG, AUTHOR 2 J.K.JENSEN,S.MUYLDERMANS,P.J.DECLERCK,P.A.ANDREASEN REVDAT 3 10-JAN-24 5LHQ 1 REMARK REVDAT 2 20-JUN-18 5LHQ 1 REMARK REVDAT 1 28-JUN-17 5LHQ 0 JRNL AUTH T.KROMANN-HANSEN,E.LOUISE LANGE,H.PETER SRENSEN, JRNL AUTH 2 G.HASSANZADEH-GHASSABEH,M.HUANG,J.K.JENSEN,S.MUYLDERMANS, JRNL AUTH 3 P.J.DECLERCK,E.A.KOMIVES,P.A.ANDREASEN JRNL TITL DISCOVERY OF A NOVEL CONFORMATIONAL EQUILIBRIUM IN JRNL TITL 2 UROKINASE-TYPE PLASMINOGEN ACTIVATOR. JRNL REF SCI REP V. 7 3385 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28611361 JRNL DOI 10.1038/S41598-017-03457-7 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.8165 - 4.9714 1.00 2824 148 0.1742 0.2038 REMARK 3 2 4.9714 - 3.9470 1.00 2736 145 0.1319 0.1536 REMARK 3 3 3.9470 - 3.4484 1.00 2697 141 0.1596 0.2059 REMARK 3 4 3.4484 - 3.1332 1.00 2671 141 0.1920 0.2248 REMARK 3 5 3.1332 - 2.9087 1.00 2691 142 0.2300 0.3246 REMARK 3 6 2.9087 - 2.7373 1.00 2645 139 0.2584 0.3064 REMARK 3 7 2.7373 - 2.6002 1.00 2659 140 0.2751 0.3310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3082 REMARK 3 ANGLE : 1.517 4175 REMARK 3 CHIRALITY : 0.078 426 REMARK 3 PLANARITY : 0.011 536 REMARK 3 DIHEDRAL : 14.854 1100 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LHQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000740. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19919 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.96600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LHR AND 4JVP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES, 1.6 M LI2SO4, PH 7.4, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.99667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 81.99333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 81.99333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.99667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -124.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 136 REMARK 465 TYR B 137 REMARK 465 PRO B 138 REMARK 465 TYR B 139 REMARK 465 ASP B 140 REMARK 465 VAL B 141 REMARK 465 PRO B 142 REMARK 465 ASP B 143 REMARK 465 TYR B 144 REMARK 465 GLY B 145 REMARK 465 SER B 146 REMARK 465 HIS B 147 REMARK 465 HIS B 148 REMARK 465 HIS B 149 REMARK 465 HIS B 150 REMARK 465 HIS B 151 REMARK 465 HIS B 152 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 195 O2 0GJ A 301 2.15 REMARK 500 O PRO B 41 O HOH B 301 2.15 REMARK 500 NH2 ARG B 67 OD2 ASP B 90 2.16 REMARK 500 OE2 GLU A 23 OG SER A 71 2.17 REMARK 500 OD1 ASP A 97 O HOH A 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD2 TYR A 149 OD2 ASP A 236 21175 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 194 C SER A 195 N 0.248 REMARK 500 SER A 195 C GLY A 196 N -0.156 REMARK 500 CYS B 96 CB CYS B 96 SG -0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 25 11.37 54.60 REMARK 500 GLN A 27 60.50 -158.48 REMARK 500 LEU A 97B -30.97 -138.68 REMARK 500 TYR A 171 -86.95 -105.25 REMARK 500 LEU A 209 96.51 -69.90 REMARK 500 TRP A 215 -178.38 -173.25 REMARK 500 ALA B 116 18.74 56.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: L-ALPHA-GLUTAMYL-N-{(1S)-4-{[AMINO(IMINIO)METHYL] REMARK 630 AMINO}-1-[(1S)-2-CHLORO-1-HYDROXYETHYL]BUTYL}GLYCINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 0GJ A 301 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: GLU GLY AR7 0QE REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 0GJ A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 205 DBREF 5LHQ A 16 243 UNP P06869 UROK_MOUSE 180 426 DBREF 5LHQ B 1 152 PDB 5LHQ 5LHQ 1 152 SEQADV 5LHQ ALA A 122 UNP P06869 CYS 301 ENGINEERED MUTATION SEQRES 1 A 247 ILE VAL GLY GLY GLU PHE THR GLU VAL GLU ASN GLN PRO SEQRES 2 A 247 TRP PHE ALA ALA ILE TYR GLN LYS ASN LYS GLY GLY SER SEQRES 3 A 247 PRO PRO SER PHE LYS CYS GLY GLY SER LEU ILE SER PRO SEQRES 4 A 247 CYS TRP VAL ALA SER ALA ALA HIS CYS PHE ILE GLN LEU SEQRES 5 A 247 PRO LYS LYS GLU ASN TYR VAL VAL TYR LEU GLY GLN SER SEQRES 6 A 247 LYS GLU SER SER TYR ASN PRO GLY GLU MET LYS PHE GLU SEQRES 7 A 247 VAL GLU GLN LEU ILE LEU HIS GLU TYR TYR ARG GLU ASP SEQRES 8 A 247 SER LEU ALA TYR HIS ASN ASP ILE ALA LEU LEU LYS ILE SEQRES 9 A 247 ARG THR SER THR GLY GLN CYS ALA GLN PRO SER ARG SER SEQRES 10 A 247 ILE GLN THR ILE ALA LEU PRO PRO ARG PHE THR ASP ALA SEQRES 11 A 247 PRO PHE GLY SER ASP CYS GLU ILE THR GLY PHE GLY LYS SEQRES 12 A 247 GLU SER GLU SER ASP TYR LEU TYR PRO LYS ASN LEU LYS SEQRES 13 A 247 MET SER VAL VAL LYS LEU VAL SER HIS GLU GLN CYS MET SEQRES 14 A 247 GLN PRO HIS TYR TYR GLY SER GLU ILE ASN TYR LYS MET SEQRES 15 A 247 LEU CYS ALA ALA ASP PRO GLU TRP LYS THR ASP SER CYS SEQRES 16 A 247 LYS GLY ASP SER GLY GLY PRO LEU ILE CYS ASN ILE GLU SEQRES 17 A 247 GLY ARG PRO THR LEU SER GLY ILE VAL SER TRP GLY ARG SEQRES 18 A 247 GLY CYS ALA GLU LYS ASN LYS PRO GLY VAL TYR THR ARG SEQRES 19 A 247 VAL SER HIS PHE LEU ASP TRP ILE GLN SER HIS ILE GLY SEQRES 1 B 152 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 152 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 152 PHE THR LEU GLY TYR TYR ALA ILE GLY TRP PHE ARG ARG SEQRES 4 B 152 ALA PRO GLY LYS GLU ARG GLU GLY VAL SER CYS ILE SER SEQRES 5 B 152 SER SER GLY GLY SER THR ASN TYR ALA ASP SER VAL LYS SEQRES 6 B 152 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 B 152 VAL ASP LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR SEQRES 8 B 152 ALA ILE TYR TYR CYS ALA ALA GLU TRP VAL PRO PRO GLY SEQRES 9 B 152 TYR GLY ALA THR VAL GLN ALA LEU CYS ASN ASN ALA GLY SEQRES 10 B 152 TYR GLY MET GLU TYR TRP GLY LYS GLY THR GLN VAL THR SEQRES 11 B 152 VAL SER SER ALA ALA ALA TYR PRO TYR ASP VAL PRO ASP SEQRES 12 B 152 TYR GLY SER HIS HIS HIS HIS HIS HIS HET 0GJ A 301 25 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET EDO A 308 4 HET EDO A 309 4 HET SO4 B 201 5 HET SO4 B 202 5 HET SO4 B 203 5 HET SO4 B 204 5 HET SO4 B 205 5 HETNAM 0GJ L-ALPHA-GLUTAMYL-N-{(1S)-4-{[AMINO(IMINIO) HETNAM 2 0GJ METHYL]AMINO}-1-[(1S)-2-CHLORO-1- HETNAM 3 0GJ HYDROXYETHYL]BUTYL}GLYCINAMIDE HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 0GJ C14 H28 CL N6 O5 1+ FORMUL 4 SO4 11(O4 S 2-) FORMUL 10 EDO 2(C2 H6 O2) FORMUL 17 HOH *123(H2 O) HELIX 1 AA1 ALA A 55 PHE A 59 5 5 HELIX 2 AA2 LYS A 61 GLU A 62A 5 3 HELIX 3 AA3 ASN A 77 MET A 81 1 5 HELIX 4 AA4 SER A 164 MET A 169 1 6 HELIX 5 AA5 TYR A 172 ILE A 176 5 5 HELIX 6 AA6 PHE A 234 HIS A 241 1 8 HELIX 7 AA7 THR B 28 TYR B 32 5 5 HELIX 8 AA8 ASP B 62 LYS B 65 5 4 HELIX 9 AA9 LYS B 87 THR B 91 5 5 HELIX 10 AB1 VAL B 109 ASN B 114 1 6 SHEET 1 AA1 8 GLU A 20 PHE A 21 0 SHEET 2 AA1 8 LYS A 156 VAL A 163 -1 O MET A 157 N GLU A 20 SHEET 3 AA1 8 MET A 180 ALA A 184 -1 O ALA A 184 N LYS A 161 SHEET 4 AA1 8 GLY A 226 ARG A 230 -1 O TYR A 228 N LEU A 181 SHEET 5 AA1 8 PRO A 207 TRP A 215 -1 N TRP A 215 O VAL A 227 SHEET 6 AA1 8 PRO A 198 ASN A 202 -1 N LEU A 199 O SER A 210 SHEET 7 AA1 8 ASP A 135 GLY A 140 -1 N GLU A 137 O ILE A 200 SHEET 8 AA1 8 LYS A 156 VAL A 163 -1 O VAL A 160 N CYS A 136 SHEET 1 AA2 7 PHE A 30 GLN A 35 0 SHEET 2 AA2 7 SER A 39 SER A 48 -1 O CYS A 42 N ILE A 33 SHEET 3 AA2 7 TRP A 51 SER A 54 -1 O ALA A 53 N SER A 45 SHEET 4 AA2 7 ALA A 104 ARG A 109 -1 O LEU A 106 N VAL A 52 SHEET 5 AA2 7 LYS A 82 LEU A 90 -1 N GLN A 87 O LYS A 107 SHEET 6 AA2 7 TYR A 64 TYR A 67 -1 N VAL A 66 O PHE A 83 SHEET 7 AA2 7 PHE A 30 GLN A 35 -1 N TYR A 34 O VAL A 65 SHEET 1 AA3 2 ARG A 95 GLU A 96 0 SHEET 2 AA3 2 TYR A 99 HIS A 100 -1 O HIS A 100 N ARG A 95 SHEET 1 AA4 4 GLN B 3 SER B 7 0 SHEET 2 AA4 4 LEU B 18 SER B 25 -1 O ALA B 23 N GLN B 5 SHEET 3 AA4 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 AA4 4 PHE B 68 ASP B 73 -1 N THR B 69 O GLN B 82 SHEET 1 AA5 6 GLY B 10 VAL B 12 0 SHEET 2 AA5 6 THR B 127 VAL B 131 1 O THR B 130 N VAL B 12 SHEET 3 AA5 6 ALA B 92 GLU B 99 -1 N ALA B 92 O VAL B 129 SHEET 4 AA5 6 ALA B 33 ARG B 39 -1 N PHE B 37 O TYR B 95 SHEET 5 AA5 6 GLU B 46 ILE B 51 -1 O VAL B 48 N TRP B 36 SHEET 6 AA5 6 THR B 58 TYR B 60 -1 O ASN B 59 N CYS B 50 SHEET 1 AA6 4 GLY B 10 VAL B 12 0 SHEET 2 AA6 4 THR B 127 VAL B 131 1 O THR B 130 N VAL B 12 SHEET 3 AA6 4 ALA B 92 GLU B 99 -1 N ALA B 92 O VAL B 129 SHEET 4 AA6 4 TYR B 122 TRP B 123 -1 O TYR B 122 N ALA B 98 SSBOND 1 CYS A 42 CYS A 58 1555 1555 2.01 SSBOND 2 CYS A 50 CYS A 111 1555 1555 2.03 SSBOND 3 CYS A 136 CYS A 201 1555 1555 2.03 SSBOND 4 CYS A 168 CYS A 182 1555 1555 2.03 SSBOND 5 CYS A 191 CYS A 220 1555 1555 2.06 SSBOND 6 CYS B 22 CYS B 96 1555 1555 2.00 SSBOND 7 CYS B 50 CYS B 113 1555 1555 2.08 LINK NE2 HIS A 57 C3 0GJ A 301 1555 1555 1.51 LINK OG SER A 195 C2 0GJ A 301 1555 1555 1.53 SITE 1 AC1 15 HIS A 57 TYR A 99 ASP A 189 SER A 190 SITE 2 AC1 15 CYS A 191 LYS A 192 GLY A 193 SER A 195 SITE 3 AC1 15 VAL A 213 SER A 214 TRP A 215 GLY A 216 SITE 4 AC1 15 GLY A 218 SO4 A 304 HOH A 412 SITE 1 AC2 3 HIS A 100 ASN A 101 LYS A 179 SITE 1 AC3 4 GLN A 167 GLN A 170 HIS A 170B TYR A 171 SITE 1 AC4 4 GLY A 216 ARG A 217 GLY A 218 0GJ A 301 SITE 1 AC5 2 SER A 115 ARG A 116 SITE 1 AC6 2 TYR A 178 ARG A 230 SITE 1 AC7 2 ASN A 202 GLY A 205 SITE 1 AC8 7 TYR A 99 HIS A 100 ASN A 101 ASP A 102 SITE 2 AC8 7 LYS A 179 THR A 229 HOH A 413 SITE 1 AC9 2 PRO A 125 ARG A 126 SITE 1 AD1 2 SER B 132 SER B 133 SITE 1 AD2 7 SER A 110A ARG B 45 GLY B 117 TYR B 118 SITE 2 AD2 7 GLY B 119 TRP B 123 HOH B 336 SITE 1 AD3 2 SER B 25 GLY B 26 SITE 1 AD4 3 LEU B 18 ARG B 19 HOH B 305 SITE 1 AD5 4 SER B 52 SER B 53 SER B 54 HOH B 302 CRYST1 94.250 94.250 122.990 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010610 0.006126 0.000000 0.00000 SCALE2 0.000000 0.012251 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008131 0.00000