HEADER TRANSFERASE 13-JUL-16 5LI1 TITLE STRUCTURE OF A PAR3-INHIBITORY PEPTIDE BOUND TO PKCIOTA CORE KINASE TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE C IOTA TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 246-589; COMPND 5 SYNONYM: ATYPICAL PROTEIN KINASE C-LAMBDA/IOTA,APKC-LAMBDA/IOTA,NPKC- COMPND 6 IOTA; COMPND 7 EC: 2.7.11.13; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PAR-3 PARTITIONING DEFECTIVE 3 HOMOLOG (C. ELEGANS); COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 816-835; COMPND 13 SYNONYM: UNCHARACTERIZED PROTEIN; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKCI, DXS1179E; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: XENOPUS TROPICALIS; SOURCE 10 ORGANISM_COMMON: WESTERN CLAWED FROG; SOURCE 11 ORGANISM_TAXID: 8364; SOURCE 12 GENE: PARD3, TEGG053L09.1-001; SOURCE 13 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS APKC, POLARITY, COMPLEX, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.V.SORIANO,A.G.PURKISS,N.Q.MCDONALD REVDAT 2 10-JAN-24 5LI1 1 REMARK REVDAT 1 14-SEP-16 5LI1 0 JRNL AUTH E.V.SORIANO,M.E.IVANOVA,G.FLETCHER,P.RIOU,P.P.KNOWLES, JRNL AUTH 2 K.BARNOUIN,A.PURKISS,B.KOSTELECKY,P.SAIU,M.LINCH,A.ELBEDIWY, JRNL AUTH 3 S.KJR,N.O'REILLY,A.P.SNIJDERS,P.J.PARKER,B.J.THOMPSON, JRNL AUTH 4 N.Q.MCDONALD JRNL TITL APKC INHIBITION BY PAR3 CR3 FLANKING REGIONS CONTROLS JRNL TITL 2 SUBSTRATE ACCESS AND UNDERPINS APICAL-JUNCTIONAL JRNL TITL 3 POLARIZATION. JRNL REF DEV.CELL V. 38 384 2016 JRNL REFN ISSN 1534-5807 JRNL PMID 27554858 JRNL DOI 10.1016/J.DEVCEL.2016.07.018 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 24233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.154 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0236 - 4.1590 0.99 2715 128 0.1454 0.1932 REMARK 3 2 4.1590 - 3.3016 1.00 2564 156 0.1301 0.1788 REMARK 3 3 3.3016 - 2.8843 1.00 2599 115 0.1533 0.2226 REMARK 3 4 2.8843 - 2.6207 1.00 2545 141 0.1620 0.2453 REMARK 3 5 2.6207 - 2.4329 1.00 2537 148 0.1606 0.2773 REMARK 3 6 2.4329 - 2.2894 1.00 2500 158 0.1599 0.2159 REMARK 3 7 2.2894 - 2.1748 1.00 2520 137 0.1582 0.2523 REMARK 3 8 2.1748 - 2.0801 0.99 2499 133 0.1687 0.2572 REMARK 3 9 2.0801 - 2.0000 0.99 2516 122 0.1795 0.2738 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2985 REMARK 3 ANGLE : 1.095 4049 REMARK 3 CHIRALITY : 0.084 430 REMARK 3 PLANARITY : 0.004 523 REMARK 3 DIHEDRAL : 13.713 1116 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3607 6.4167 14.7719 REMARK 3 T TENSOR REMARK 3 T11: 0.1221 T22: 0.1417 REMARK 3 T33: 0.1310 T12: -0.0236 REMARK 3 T13: 0.0040 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 2.8441 L22: 3.3964 REMARK 3 L33: 1.7412 L12: 1.0151 REMARK 3 L13: -0.6530 L23: 0.3007 REMARK 3 S TENSOR REMARK 3 S11: 0.0473 S12: 0.1173 S13: 0.1923 REMARK 3 S21: -0.0746 S22: 0.0128 S23: -0.1663 REMARK 3 S31: -0.1366 S32: -0.0093 S33: -0.0511 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 333 THROUGH 541 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.3222 -15.1395 10.1864 REMARK 3 T TENSOR REMARK 3 T11: 0.1126 T22: 0.1323 REMARK 3 T33: 0.1110 T12: -0.0162 REMARK 3 T13: 0.0006 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.2070 L22: 1.7733 REMARK 3 L33: 1.9613 L12: -0.0390 REMARK 3 L13: 0.1200 L23: -0.1503 REMARK 3 S TENSOR REMARK 3 S11: -0.0222 S12: -0.0152 S13: -0.0643 REMARK 3 S21: -0.0429 S22: 0.0127 S23: -0.0319 REMARK 3 S31: 0.0786 S32: -0.0530 S33: 0.0044 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 542 THROUGH 567 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8576 -1.4593 10.3423 REMARK 3 T TENSOR REMARK 3 T11: 0.1163 T22: 0.3133 REMARK 3 T33: 0.3115 T12: -0.0114 REMARK 3 T13: 0.0064 T23: -0.0373 REMARK 3 L TENSOR REMARK 3 L11: 1.8245 L22: 8.2491 REMARK 3 L33: 2.7193 L12: 1.1927 REMARK 3 L13: -1.7296 L23: -3.2458 REMARK 3 S TENSOR REMARK 3 S11: -0.1546 S12: 0.0395 S13: -0.1798 REMARK 3 S21: -0.1974 S22: -0.1109 S23: -0.8434 REMARK 3 S31: 0.1124 S32: 0.1989 S33: 0.3387 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 568 THROUGH 589 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.2254 17.0169 12.3436 REMARK 3 T TENSOR REMARK 3 T11: 0.2355 T22: 0.1702 REMARK 3 T33: 0.2456 T12: 0.0099 REMARK 3 T13: 0.0070 T23: -0.0235 REMARK 3 L TENSOR REMARK 3 L11: 4.9433 L22: 7.6385 REMARK 3 L33: 4.8536 L12: 3.6003 REMARK 3 L13: -3.8478 L23: -5.8187 REMARK 3 S TENSOR REMARK 3 S11: 0.0985 S12: 0.2201 S13: 0.5743 REMARK 3 S21: 0.3829 S22: 0.0725 S23: 0.3937 REMARK 3 S31: -0.8068 S32: -0.2602 S33: -0.2061 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' REMARK 3 ORIGIN FOR THE GROUP (A): -24.3332 -5.0583 -1.1893 REMARK 3 T TENSOR REMARK 3 T11: 0.2151 T22: 0.2249 REMARK 3 T33: 0.2456 T12: -0.0476 REMARK 3 T13: 0.0316 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.1353 L22: 1.4061 REMARK 3 L33: 3.1230 L12: 0.9677 REMARK 3 L13: 0.1294 L23: -0.3420 REMARK 3 S TENSOR REMARK 3 S11: 0.1038 S12: 0.3200 S13: 0.4638 REMARK 3 S21: -0.3028 S22: -0.0664 S23: -0.6390 REMARK 3 S31: -0.1843 S32: 0.2099 S33: -0.0162 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LI1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000696. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25607 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 41.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3A8W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% PEG 2000 MME, 0.08 M KSCN, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.26333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.52667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 60.52667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.26333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 243 REMARK 465 PRO A 244 REMARK 465 LEU A 245 REMARK 465 VAL A 456 REMARK 465 GLY A 457 REMARK 465 SER A 458 REMARK 465 SER A 459 REMARK 465 ASP A 460 REMARK 465 ASN A 461 REMARK 465 PRO A 462 REMARK 465 ASP A 463 REMARK 465 GLN A 464 REMARK 465 ASN A 465 REMARK 465 MET A 590 REMARK 465 SER A 591 REMARK 465 ALA A 592 REMARK 465 GLU A 593 REMARK 465 GLU A 594 REMARK 465 CYS A 595 REMARK 465 VAL A 596 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 275 CD CE NZ REMARK 470 GLU A 288 CD OE1 OE2 REMARK 470 ASN A 291 CG OD1 ND2 REMARK 470 GLU A 325 CD OE1 OE2 REMARK 470 ARG A 348 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 353 CG CD OE1 OE2 REMARK 470 ASP A 454 CG OD1 OD2 REMARK 470 ILE A 455 CG1 CG2 CD1 REMARK 470 ARG A 483 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 494 CD CE NZ REMARK 470 LYS A 502 CD CE NZ REMARK 470 GLU A 503 CD OE1 OE2 REMARK 470 GLU A 546 CG CD OE1 OE2 REMARK 470 GLU A 580 CG CD OE1 OE2 REMARK 470 LEU A 589 CG CD1 CD2 REMARK 470 LEU B 1 CG CD1 CD2 REMARK 470 GLN B 20 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN A 308 NH2 ARG A 372 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 841 O HOH A 864 6455 0.64 REMARK 500 O HOH A 783 O HOH A 791 6455 0.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 371 C ARG A 372 N -0.186 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 291 -85.43 -84.27 REMARK 500 ARG A 348 -43.09 75.51 REMARK 500 ASP A 378 39.69 -144.95 REMARK 500 ASP A 396 90.17 73.22 REMARK 500 SER A 411 13.14 -140.78 REMARK 500 LEU A 588 40.30 -98.81 REMARK 500 GLU B 6 19.26 59.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 884 DISTANCE = 5.99 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ANP A 601 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 292 OD1 REMARK 620 2 ASP A 292 OD2 47.9 REMARK 620 3 HOH B 113 O 150.6 106.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 603 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 309 O REMARK 620 2 HIS A 312 O 73.2 REMARK 620 3 LEU A 315 O 86.7 89.6 REMARK 620 4 HOH A 815 O 173.4 106.3 99.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 604 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 383 OD1 REMARK 620 2 ASP A 396 OD2 94.6 REMARK 620 3 ANP A 601 O2B 171.4 85.3 REMARK 620 4 ANP A 601 O1A 92.0 87.8 79.5 REMARK 620 5 HOH A 774 O 92.0 171.9 87.4 87.3 REMARK 620 6 HOH A 781 O 96.9 76.0 91.4 162.0 107.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 605 DBREF 5LI1 A 248 596 UNP P41743 KPCI_HUMAN 248 596 DBREF 5LI1 B 1 20 UNP Q28E03 Q28E03_XENTR 271 290 SEQADV 5LI1 GLY A 243 UNP P41743 EXPRESSION TAG SEQADV 5LI1 PRO A 244 UNP P41743 EXPRESSION TAG SEQADV 5LI1 LEU A 245 UNP P41743 EXPRESSION TAG SEQADV 5LI1 SER A 246 UNP P41743 EXPRESSION TAG SEQADV 5LI1 PHE A 247 UNP P41743 EXPRESSION TAG SEQRES 1 A 354 GLY PRO LEU SER PHE SER LEU GLY LEU GLN ASP PHE ASP SEQRES 2 A 354 LEU LEU ARG VAL ILE GLY ARG GLY SER TYR ALA LYS VAL SEQRES 3 A 354 LEU LEU VAL ARG LEU LYS LYS THR ASP ARG ILE TYR ALA SEQRES 4 A 354 MET LYS VAL VAL LYS LYS GLU LEU VAL ASN ASP ASP GLU SEQRES 5 A 354 ASP ILE ASP TRP VAL GLN THR GLU LYS HIS VAL PHE GLU SEQRES 6 A 354 GLN ALA SER ASN HIS PRO PHE LEU VAL GLY LEU HIS SER SEQRES 7 A 354 CYS PHE GLN THR GLU SER ARG LEU PHE PHE VAL ILE GLU SEQRES 8 A 354 TYR VAL ASN GLY GLY ASP LEU MET PHE HIS MET GLN ARG SEQRES 9 A 354 GLN ARG LYS LEU PRO GLU GLU HIS ALA ARG PHE TYR SER SEQRES 10 A 354 ALA GLU ILE SER LEU ALA LEU ASN TYR LEU HIS GLU ARG SEQRES 11 A 354 GLY ILE ILE TYR ARG ASP LEU LYS LEU ASP ASN VAL LEU SEQRES 12 A 354 LEU ASP SER GLU GLY HIS ILE LYS LEU THR ASP TYR GLY SEQRES 13 A 354 MET CYS LYS GLU GLY LEU ARG PRO GLY ASP THR THR SER SEQRES 14 A 354 TPO PHE CYS GLY THR PRO ASN TYR ILE ALA PRO GLU ILE SEQRES 15 A 354 LEU ARG GLY GLU ASP TYR GLY PHE SER VAL ASP TRP TRP SEQRES 16 A 354 ALA LEU GLY VAL LEU MET PHE GLU MET MET ALA GLY ARG SEQRES 17 A 354 SER PRO PHE ASP ILE VAL GLY SER SER ASP ASN PRO ASP SEQRES 18 A 354 GLN ASN THR GLU ASP TYR LEU PHE GLN VAL ILE LEU GLU SEQRES 19 A 354 LYS GLN ILE ARG ILE PRO ARG SEP LEU SER VAL LYS ALA SEQRES 20 A 354 ALA SER VAL LEU LYS SER PHE LEU ASN LYS ASP PRO LYS SEQRES 21 A 354 GLU ARG LEU GLY CYS HIS PRO GLN THR GLY PHE ALA ASP SEQRES 22 A 354 ILE GLN GLY HIS PRO PHE PHE ARG ASN VAL ASP TRP ASP SEQRES 23 A 354 MET MET GLU GLN LYS GLN VAL VAL PRO PRO PHE LYS PRO SEQRES 24 A 354 ASN ILE SER GLY GLU PHE GLY LEU ASP ASN PHE ASP SER SEQRES 25 A 354 GLN PHE THR ASN GLU PRO VAL GLN LEU TPO PRO ASP ASP SEQRES 26 A 354 ASP ASP ILE VAL ARG LYS ILE ASP GLN SER GLU PHE GLU SEQRES 27 A 354 GLY PHE GLU TYR ILE ASN PRO LEU LEU MET SER ALA GLU SEQRES 28 A 354 GLU CYS VAL SEQRES 1 B 20 LEU ALA PHE GLN ARG GLU GLY PHE GLY ARG GLN SER MET SEQRES 2 B 20 SER GLU LYS ARG THR LYS GLN MODRES 5LI1 TPO A 412 THR MODIFIED RESIDUE MODRES 5LI1 SEP A 484 SER MODIFIED RESIDUE MODRES 5LI1 TPO A 564 THR MODIFIED RESIDUE HET TPO A 412 11 HET SEP A 484 10 HET TPO A 564 11 HET ANP A 601 27 HET GOL A 602 6 HET K A 603 1 HET MG A 604 1 HET MG A 605 1 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM GOL GLYCEROL HETNAM K POTASSIUM ION HETNAM MG MAGNESIUM ION HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 1 SEP C3 H8 N O6 P FORMUL 3 ANP C10 H17 N6 O12 P3 FORMUL 4 GOL C3 H8 O3 FORMUL 5 K K 1+ FORMUL 6 MG 2(MG 2+) FORMUL 8 HOH *197(H2 O) HELIX 1 AA1 GLY A 250 GLN A 252 5 3 HELIX 2 AA2 GLU A 288 VAL A 290 5 3 HELIX 3 AA3 ASP A 292 SER A 310 1 19 HELIX 4 AA4 ASP A 339 ARG A 348 1 10 HELIX 5 AA5 PRO A 351 ARG A 372 1 22 HELIX 6 AA6 LYS A 380 ASP A 382 5 3 HELIX 7 AA7 THR A 416 ILE A 420 5 5 HELIX 8 AA8 ALA A 421 ARG A 426 1 6 HELIX 9 AA9 PHE A 432 GLY A 449 1 18 HELIX 10 AB1 GLU A 467 LYS A 477 1 11 HELIX 11 AB2 SER A 486 LEU A 497 1 12 HELIX 12 AB3 THR A 511 GLY A 518 1 8 HELIX 13 AB4 HIS A 519 ARG A 523 5 5 HELIX 14 AB5 ASP A 526 GLU A 531 1 6 HELIX 15 AB6 GLY A 545 PHE A 552 5 8 HELIX 16 AB7 ASP A 553 ASN A 558 1 6 HELIX 17 AB8 ASP A 567 ARG A 572 1 6 HELIX 18 AB9 LYS A 573 ILE A 574 5 2 HELIX 19 AC1 ASP A 575 GLU A 580 5 6 SHEET 1 AA1 6 PHE A 254 ARG A 262 0 SHEET 2 AA1 6 LYS A 267 LEU A 273 -1 O VAL A 268 N GLY A 261 SHEET 3 AA1 6 ILE A 279 LYS A 286 -1 O TYR A 280 N VAL A 271 SHEET 4 AA1 6 ARG A 327 ILE A 332 -1 O LEU A 328 N VAL A 285 SHEET 5 AA1 6 LEU A 318 GLN A 323 -1 N HIS A 319 O VAL A 331 SHEET 6 AA1 6 TYR A 584 ILE A 585 -1 O TYR A 584 N CYS A 321 SHEET 1 AA2 2 VAL A 384 LEU A 386 0 SHEET 2 AA2 2 ILE A 392 LEU A 394 -1 O LYS A 393 N LEU A 385 SHEET 1 AA3 2 CYS A 414 GLY A 415 0 SHEET 2 AA3 2 MET B 13 SER B 14 -1 O MET B 13 N GLY A 415 LINK C SER A 411 N TPO A 412 1555 1555 1.33 LINK C TPO A 412 N PHE A 413 1555 1555 1.33 LINK C ARG A 483 N SEP A 484 1555 1555 1.33 LINK C SEP A 484 N LEU A 485 1555 1555 1.33 LINK C LEU A 563 N TPO A 564 1555 1555 1.33 LINK C TPO A 564 N PRO A 565 1555 1555 1.35 LINK OD1 ASP A 292 MG MG A 605 1555 1555 2.58 LINK OD2 ASP A 292 MG MG A 605 1555 1555 2.79 LINK O ALA A 309 K K A 603 1555 1555 2.94 LINK O HIS A 312 K K A 603 1555 1555 2.53 LINK O LEU A 315 K K A 603 1555 1555 2.58 LINK OD1 ASN A 383 MG MG A 604 1555 1555 2.43 LINK OD2 ASP A 396 MG MG A 604 1555 1555 2.58 LINK O2B ANP A 601 MG MG A 604 1555 1555 2.38 LINK O1A ANP A 601 MG MG A 604 1555 1555 2.01 LINK K K A 603 O HOH A 815 1555 1555 2.70 LINK MG MG A 604 O HOH A 774 1555 1555 2.56 LINK MG MG A 604 O HOH A 781 1555 1555 1.96 LINK MG MG A 605 O HOH B 113 1555 1555 2.93 SITE 1 AC1 23 GLY A 261 GLY A 263 SER A 264 TYR A 265 SITE 2 AC1 23 ALA A 266 VAL A 268 ALA A 281 LYS A 283 SITE 3 AC1 23 ILE A 332 GLU A 333 VAL A 335 ASP A 339 SITE 4 AC1 23 ASP A 382 ASN A 383 LEU A 385 ASP A 396 SITE 5 AC1 23 PHE A 552 MG A 604 HOH A 716 HOH A 725 SITE 6 AC1 23 HOH A 733 HOH A 746 HOH A 774 SITE 1 AC2 8 THR A 301 ARG A 377 CYS A 400 LYS A 401 SITE 2 AC2 8 GLU A 402 TPO A 412 HOH A 702 HOH A 814 SITE 1 AC3 5 ALA A 309 HIS A 312 LEU A 315 GLU A 333 SITE 2 AC3 5 HOH A 815 SITE 1 AC4 5 ASN A 383 ASP A 396 ANP A 601 HOH A 774 SITE 2 AC4 5 HOH A 781 SITE 1 AC5 6 ASP A 292 GLU A 294 ASP A 295 LYS B 16 SITE 2 AC5 6 THR B 18 HOH B 113 CRYST1 82.030 82.030 90.790 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012191 0.007038 0.000000 0.00000 SCALE2 0.000000 0.014077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011014 0.00000