HEADER SIGNALING PROTEIN 14-JUL-16 5LI3 TITLE CRYSTAL STRUCTURE OF HDAC-LIKE PROTEIN FROM P. AERUGINOSA IN COMPLEX TITLE 2 WITH A PHOTO-SWITCHABLE INHIBITOR. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETOIN UTILIZATION PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: AO946_14160; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS HISTONE DEACETYLASE, HISTONE DEACETYLASE INHIBITORS, HDAH, SIGNALING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.KRAEMER,F.J.MEYER-ALMES,O.YILDIZ REVDAT 4 10-JAN-24 5LI3 1 LINK REVDAT 3 06-SEP-17 5LI3 1 REMARK REVDAT 2 22-FEB-17 5LI3 1 JRNL REVDAT 1 23-NOV-16 5LI3 0 JRNL AUTH C.E.WESTON,A.KRAMER,F.COLIN,O.YILDIZ,M.G.BAUD, JRNL AUTH 2 F.J.MEYER-ALMES,M.J.FUCHTER JRNL TITL TOWARD PHOTOPHARMACOLOGICAL ANTIMICROBIAL CHEMOTHERAPY USING JRNL TITL 2 PHOTOSWITCHABLE AMIDOHYDROLASE INHIBITORS. JRNL REF ACS INFECT DIS V. 3 152 2017 JRNL REFN ESSN 2373-8227 JRNL PMID 27756124 JRNL DOI 10.1021/ACSINFECDIS.6B00148 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 28611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1424 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2059 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5654 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 153 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.44000 REMARK 3 B22 (A**2) : 1.44000 REMARK 3 B33 (A**2) : -2.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.583 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.298 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.269 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.055 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.906 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5852 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5488 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7928 ; 1.391 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12544 ; 1.111 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 740 ; 6.024 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 281 ;35.925 ;22.598 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 861 ;15.087 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 60 ;15.919 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 837 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6820 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1440 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2968 ; 2.065 ; 4.503 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2969 ; 2.065 ; 4.504 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3704 ; 3.368 ; 6.743 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3705 ; 3.368 ; 6.745 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2884 ; 2.353 ; 4.862 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2885 ; 2.353 ; 4.864 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4225 ; 3.841 ; 7.175 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6510 ; 6.333 ;36.105 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6503 ; 6.319 ;36.113 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 369 B 3 369 44166 0.07 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LI3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000780. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0002 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41043 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 32.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.24000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : 0.92000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5G0X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.5M POTASSIUM HYDROGEN PHOSPHATE 0.5M REMARK 280 SODIUM HYDROGEN PHOSPHATE 0.1M AMMONIUM SULPHATE, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 108.51500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.09500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.09500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.25750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.09500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.09500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 162.77250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.09500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.09500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.25750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.09500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.09500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 162.77250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 108.51500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLN A 377 REMARK 465 ALA A 378 REMARK 465 ALA A 379 REMARK 465 ARG A 380 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 CYS B 371 REMARK 465 PRO B 372 REMARK 465 ALA B 373 REMARK 465 GLN B 374 REMARK 465 PRO B 375 REMARK 465 LEU B 376 REMARK 465 GLN B 377 REMARK 465 ALA B 378 REMARK 465 ALA B 379 REMARK 465 ARG B 380 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 23 -113.86 59.31 REMARK 500 ALA A 36 -67.72 -129.21 REMARK 500 ALA A 37 -74.55 -28.37 REMARK 500 GLU A 41 78.81 -60.82 REMARK 500 SER A 66 -166.96 -104.88 REMARK 500 ALA A 102 66.27 -151.26 REMARK 500 ALA A 157 74.57 -69.34 REMARK 500 SER A 214 -65.05 -107.19 REMARK 500 ASP A 222 -121.74 56.62 REMARK 500 GLU A 310 -110.24 -119.58 REMARK 500 CYS A 371 107.97 69.33 REMARK 500 LEU B 23 -113.63 58.48 REMARK 500 ALA B 36 -67.88 -128.77 REMARK 500 ALA B 37 -76.62 -29.03 REMARK 500 GLU B 41 80.19 -60.98 REMARK 500 SER B 66 -167.37 -104.32 REMARK 500 ALA B 102 65.48 -152.22 REMARK 500 ALA B 157 74.37 -69.39 REMARK 500 SER B 214 -64.19 -106.93 REMARK 500 ASP B 222 -122.71 57.85 REMARK 500 GLU B 310 -110.65 -119.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 179 O REMARK 620 2 ASP A 179 OD1 63.1 REMARK 620 3 ASP A 181 O 93.6 89.3 REMARK 620 4 HIS A 183 O 166.0 103.2 82.6 REMARK 620 5 SER A 202 OG 89.9 112.8 156.6 98.9 REMARK 620 6 LEU A 203 O 73.3 131.8 73.5 118.0 85.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 181 OD1 REMARK 620 2 ASP A 181 OD2 63.8 REMARK 620 3 HIS A 183 ND1 96.4 159.5 REMARK 620 4 ASP A 269 OD2 107.3 88.7 92.4 REMARK 620 5 9RB A 404 O 174.1 122.1 77.7 73.9 REMARK 620 6 9RB A 404 O1 111.4 81.5 112.7 130.2 70.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 403 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 192 O REMARK 620 2 ARG A 195 O 79.1 REMARK 620 3 VAL A 198 O 118.3 84.7 REMARK 620 4 PHE A 227 O 158.5 110.7 82.3 REMARK 620 5 HOH A 503 O 64.9 143.0 118.8 101.1 REMARK 620 6 HOH A 527 O 87.4 84.5 149.4 75.0 85.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 179 O REMARK 620 2 ASP B 179 OD1 65.4 REMARK 620 3 ASP B 181 O 97.3 90.0 REMARK 620 4 HIS B 183 O 164.7 99.4 79.8 REMARK 620 5 SER B 202 OG 91.7 112.7 157.3 96.5 REMARK 620 6 LEU B 203 O 76.5 137.1 75.3 116.7 86.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 181 OD1 REMARK 620 2 ASP B 181 OD2 63.3 REMARK 620 3 HIS B 183 ND1 94.9 156.9 REMARK 620 4 ASP B 269 OD2 105.1 88.5 90.0 REMARK 620 5 9RB B 404 O1 114.7 72.0 127.9 119.1 REMARK 620 6 9RB B 404 O 164.5 131.3 71.2 82.4 71.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 403 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 192 O REMARK 620 2 ARG B 195 O 76.9 REMARK 620 3 VAL B 198 O 115.2 84.4 REMARK 620 4 PHE B 227 O 159.1 111.6 85.1 REMARK 620 5 HOH B 538 O 88.1 85.0 151.3 74.2 REMARK 620 6 HOH B 553 O 64.5 139.0 123.4 101.1 80.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9RB A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 9RB B 404 DBREF1 5LI3 A 1 380 UNP A0A0D6GAJ7_PSEAI DBREF2 5LI3 A A0A0D6GAJ7 1 380 DBREF1 5LI3 B 1 380 UNP A0A0D6GAJ7_PSEAI DBREF2 5LI3 B A0A0D6GAJ7 1 380 SEQRES 1 A 380 MET THR ARG ARG THR ALA PHE PHE PHE ASP GLU LEU CYS SEQRES 2 A 380 LEU TRP HIS ALA ALA GLY PRO HIS ALA LEU THR LEU PRO SEQRES 3 A 380 VAL GLY GLY TRP VAL GLN PRO PRO ALA ALA ALA GLY HIS SEQRES 4 A 380 ALA GLU SER PRO GLU THR LYS ARG ARG LEU LYS SER LEU SEQRES 5 A 380 LEU ASP VAL SER GLY LEU THR ALA ARG LEU GLN LEU ARG SEQRES 6 A 380 SER ALA PRO PRO ALA SER ASP GLU ASP LEU LEU ARG VAL SEQRES 7 A 380 HIS PRO ALA HIS TYR LEU GLU ARG PHE LYS ALA LEU SER SEQRES 8 A 380 ASP ALA GLY GLY GLY SER LEU GLY GLN ASP ALA PRO ILE SEQRES 9 A 380 GLY PRO GLY SER TYR GLU ILE ALA ARG LEU SER ALA GLY SEQRES 10 A 380 LEU ALA ILE ALA ALA LEU ASP ALA VAL LEU ALA GLY GLU SEQRES 11 A 380 ALA ASP ASN ALA TYR SER LEU SER ARG PRO PRO GLY HIS SEQRES 12 A 380 HIS CYS LEU PRO ASP GLN ALA MET GLY PHE CYS PHE PHE SEQRES 13 A 380 ALA ASN ILE ALA VAL ALA ILE GLU ALA ALA LYS ALA ARG SEQRES 14 A 380 HIS GLY VAL GLU ARG VAL ALA VAL LEU ASP TRP ASP VAL SEQRES 15 A 380 HIS HIS GLY ASN GLY THR GLN ALA ILE TYR TYR ARG ARG SEQRES 16 A 380 ASP ASP VAL LEU SER ILE SER LEU HIS GLN ASP GLY CYS SEQRES 17 A 380 PHE PRO PRO GLY TYR SER GLY ALA GLU ASP ILE GLY GLU SEQRES 18 A 380 ASP ARG GLY ARG GLY PHE ASN LEU ASN VAL PRO LEU LEU SEQRES 19 A 380 PRO GLY GLY GLY HIS ASP ALA TYR MET GLN ALA MET GLN SEQRES 20 A 380 ARG ILE VAL LEU PRO ALA LEU GLU ARG PHE ARG PRO GLN SEQRES 21 A 380 LEU ILE VAL VAL ALA SER GLY PHE ASP ALA ASN ALA VAL SEQRES 22 A 380 ASP PRO LEU ALA ARG MET GLN LEU HIS SER ASP SER PHE SEQRES 23 A 380 ARG ALA MET THR ALA MET VAL ARG ASP ALA ALA GLU ARG SEQRES 24 A 380 HIS ALA GLY GLY ARG LEU VAL VAL VAL HIS GLU GLY GLY SEQRES 25 A 380 TYR SER GLU ALA TYR VAL PRO PHE CYS GLY LEU ALA VAL SEQRES 26 A 380 ILE GLU GLU LEU SER GLY VAL ARG SER ALA VAL ARG ASP SEQRES 27 A 380 PRO LEU ARG ASP PHE ILE GLU LEU GLN GLN PRO ASN ALA SEQRES 28 A 380 ALA PHE ARG ASP PHE GLN ARG GLN ARG LEU GLU GLU LEU SEQRES 29 A 380 ALA ALA GLN PHE GLY LEU CYS PRO ALA GLN PRO LEU GLN SEQRES 30 A 380 ALA ALA ARG SEQRES 1 B 380 MET THR ARG ARG THR ALA PHE PHE PHE ASP GLU LEU CYS SEQRES 2 B 380 LEU TRP HIS ALA ALA GLY PRO HIS ALA LEU THR LEU PRO SEQRES 3 B 380 VAL GLY GLY TRP VAL GLN PRO PRO ALA ALA ALA GLY HIS SEQRES 4 B 380 ALA GLU SER PRO GLU THR LYS ARG ARG LEU LYS SER LEU SEQRES 5 B 380 LEU ASP VAL SER GLY LEU THR ALA ARG LEU GLN LEU ARG SEQRES 6 B 380 SER ALA PRO PRO ALA SER ASP GLU ASP LEU LEU ARG VAL SEQRES 7 B 380 HIS PRO ALA HIS TYR LEU GLU ARG PHE LYS ALA LEU SER SEQRES 8 B 380 ASP ALA GLY GLY GLY SER LEU GLY GLN ASP ALA PRO ILE SEQRES 9 B 380 GLY PRO GLY SER TYR GLU ILE ALA ARG LEU SER ALA GLY SEQRES 10 B 380 LEU ALA ILE ALA ALA LEU ASP ALA VAL LEU ALA GLY GLU SEQRES 11 B 380 ALA ASP ASN ALA TYR SER LEU SER ARG PRO PRO GLY HIS SEQRES 12 B 380 HIS CYS LEU PRO ASP GLN ALA MET GLY PHE CYS PHE PHE SEQRES 13 B 380 ALA ASN ILE ALA VAL ALA ILE GLU ALA ALA LYS ALA ARG SEQRES 14 B 380 HIS GLY VAL GLU ARG VAL ALA VAL LEU ASP TRP ASP VAL SEQRES 15 B 380 HIS HIS GLY ASN GLY THR GLN ALA ILE TYR TYR ARG ARG SEQRES 16 B 380 ASP ASP VAL LEU SER ILE SER LEU HIS GLN ASP GLY CYS SEQRES 17 B 380 PHE PRO PRO GLY TYR SER GLY ALA GLU ASP ILE GLY GLU SEQRES 18 B 380 ASP ARG GLY ARG GLY PHE ASN LEU ASN VAL PRO LEU LEU SEQRES 19 B 380 PRO GLY GLY GLY HIS ASP ALA TYR MET GLN ALA MET GLN SEQRES 20 B 380 ARG ILE VAL LEU PRO ALA LEU GLU ARG PHE ARG PRO GLN SEQRES 21 B 380 LEU ILE VAL VAL ALA SER GLY PHE ASP ALA ASN ALA VAL SEQRES 22 B 380 ASP PRO LEU ALA ARG MET GLN LEU HIS SER ASP SER PHE SEQRES 23 B 380 ARG ALA MET THR ALA MET VAL ARG ASP ALA ALA GLU ARG SEQRES 24 B 380 HIS ALA GLY GLY ARG LEU VAL VAL VAL HIS GLU GLY GLY SEQRES 25 B 380 TYR SER GLU ALA TYR VAL PRO PHE CYS GLY LEU ALA VAL SEQRES 26 B 380 ILE GLU GLU LEU SER GLY VAL ARG SER ALA VAL ARG ASP SEQRES 27 B 380 PRO LEU ARG ASP PHE ILE GLU LEU GLN GLN PRO ASN ALA SEQRES 28 B 380 ALA PHE ARG ASP PHE GLN ARG GLN ARG LEU GLU GLU LEU SEQRES 29 B 380 ALA ALA GLN PHE GLY LEU CYS PRO ALA GLN PRO LEU GLN SEQRES 30 B 380 ALA ALA ARG HET ZN A 401 1 HET K A 402 1 HET K A 403 1 HET 9RB A 404 22 HET ZN B 401 1 HET K B 402 1 HET K B 403 1 HET 9RB B 404 22 HETNAM ZN ZINC ION HETNAM K POTASSIUM ION HETNAM 9RB (2E)-N-HYDROXY-3-{4-[(E)-(1,3,5-TRIMETHYL-1H-PYRAZOL-4- HETNAM 2 9RB YL)DIAZENYL]PHENYL}PROP-2-ENAMIDE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 K 4(K 1+) FORMUL 6 9RB 2(C15 H17 N5 O2) FORMUL 11 HOH *153(H2 O) HELIX 1 AA1 ASP A 10 HIS A 16 5 7 HELIX 2 AA2 SER A 42 SER A 56 1 15 HELIX 3 AA3 LEU A 58 LEU A 62 5 5 HELIX 4 AA4 SER A 71 ARG A 77 1 7 HELIX 5 AA5 PRO A 80 GLY A 94 1 15 HELIX 6 AA6 GLY A 107 ALA A 128 1 22 HELIX 7 AA7 ALA A 157 GLY A 171 1 15 HELIX 8 AA8 GLY A 185 TYR A 192 1 8 HELIX 9 AA9 GLU A 221 ARG A 225 5 5 HELIX 10 AB1 GLY A 238 ILE A 249 1 12 HELIX 11 AB2 ILE A 249 ARG A 258 1 10 HELIX 12 AB3 HIS A 282 ALA A 301 1 20 HELIX 13 AB4 TYR A 317 GLY A 331 1 15 HELIX 14 AB5 LEU A 340 GLN A 347 1 8 HELIX 15 AB6 ASN A 350 GLY A 369 1 20 HELIX 16 AB7 ASP B 10 HIS B 16 5 7 HELIX 17 AB8 SER B 42 SER B 56 1 15 HELIX 18 AB9 LEU B 58 LEU B 62 5 5 HELIX 19 AC1 SER B 71 ARG B 77 1 7 HELIX 20 AC2 PRO B 80 GLY B 94 1 15 HELIX 21 AC3 GLY B 107 ALA B 128 1 22 HELIX 22 AC4 ALA B 157 GLY B 171 1 15 HELIX 23 AC5 GLY B 185 TYR B 192 1 8 HELIX 24 AC6 GLU B 221 ARG B 225 5 5 HELIX 25 AC7 GLY B 238 ILE B 249 1 12 HELIX 26 AC8 ILE B 249 ARG B 258 1 10 HELIX 27 AC9 HIS B 282 ALA B 301 1 20 HELIX 28 AD1 TYR B 317 GLY B 331 1 15 HELIX 29 AD2 LEU B 340 GLN B 347 1 8 HELIX 30 AD3 ASN B 350 GLY B 369 1 20 SHEET 1 AA1 8 GLN A 63 ARG A 65 0 SHEET 2 AA1 8 THR A 5 PHE A 8 1 N PHE A 7 O GLN A 63 SHEET 3 AA1 8 ASN A 133 SER A 136 1 O TYR A 135 N PHE A 8 SHEET 4 AA1 8 LEU A 305 HIS A 309 1 O HIS A 309 N SER A 136 SHEET 5 AA1 8 LEU A 261 SER A 266 1 N VAL A 264 O VAL A 308 SHEET 6 AA1 8 VAL A 175 ASP A 179 1 N ALA A 176 O VAL A 263 SHEET 7 AA1 8 VAL A 198 GLN A 205 1 O LEU A 199 N VAL A 177 SHEET 8 AA1 8 ASN A 228 LEU A 233 1 O LEU A 233 N HIS A 204 SHEET 1 AA2 2 HIS A 21 ALA A 22 0 SHEET 2 AA2 2 LEU A 25 PRO A 26 -1 O LEU A 25 N ALA A 22 SHEET 1 AA3 2 GLY A 96 GLY A 99 0 SHEET 2 AA3 2 ALA A 102 ILE A 104 -1 O ILE A 104 N GLY A 96 SHEET 1 AA4 8 GLN B 63 ARG B 65 0 SHEET 2 AA4 8 THR B 5 PHE B 8 1 N PHE B 7 O GLN B 63 SHEET 3 AA4 8 ASN B 133 SER B 136 1 O TYR B 135 N PHE B 8 SHEET 4 AA4 8 LEU B 305 HIS B 309 1 O HIS B 309 N SER B 136 SHEET 5 AA4 8 LEU B 261 SER B 266 1 N VAL B 264 O VAL B 308 SHEET 6 AA4 8 VAL B 175 ASP B 179 1 N ALA B 176 O VAL B 263 SHEET 7 AA4 8 VAL B 198 GLN B 205 1 O LEU B 199 N VAL B 177 SHEET 8 AA4 8 ASN B 228 LEU B 233 1 O LEU B 233 N HIS B 204 SHEET 1 AA5 2 HIS B 21 ALA B 22 0 SHEET 2 AA5 2 LEU B 25 PRO B 26 -1 O LEU B 25 N ALA B 22 SHEET 1 AA6 2 GLY B 96 GLY B 99 0 SHEET 2 AA6 2 ALA B 102 ILE B 104 -1 O ILE B 104 N GLY B 96 LINK O ASP A 179 K K A 402 1555 1555 3.13 LINK OD1 ASP A 179 K K A 402 1555 1555 2.65 LINK OD1 ASP A 181 ZN ZN A 401 1555 1555 2.01 LINK OD2 ASP A 181 ZN ZN A 401 1555 1555 2.04 LINK O ASP A 181 K K A 402 1555 1555 2.61 LINK ND1 HIS A 183 ZN ZN A 401 1555 1555 2.10 LINK O HIS A 183 K K A 402 1555 1555 2.55 LINK O TYR A 192 K K A 403 1555 1555 2.47 LINK O ARG A 195 K K A 403 1555 1555 3.05 LINK O VAL A 198 K K A 403 1555 1555 2.72 LINK OG SER A 202 K K A 402 1555 1555 2.95 LINK O LEU A 203 K K A 402 1555 1555 2.59 LINK O PHE A 227 K K A 403 1555 1555 2.68 LINK OD2 ASP A 269 ZN ZN A 401 1555 1555 2.01 LINK ZN ZN A 401 O 9RB A 404 1555 1555 2.00 LINK ZN ZN A 401 O1 9RB A 404 1555 1555 2.02 LINK K K A 403 O HOH A 503 1555 1555 2.91 LINK K K A 403 O HOH A 527 1555 1555 2.68 LINK O ASP B 179 K K B 402 1555 1555 3.01 LINK OD1 ASP B 179 K K B 402 1555 1555 2.64 LINK OD1 ASP B 181 ZN ZN B 401 1555 1555 2.03 LINK OD2 ASP B 181 ZN ZN B 401 1555 1555 2.03 LINK O ASP B 181 K K B 402 1555 1555 2.60 LINK ND1 HIS B 183 ZN ZN B 401 1555 1555 2.12 LINK O HIS B 183 K K B 402 1555 1555 2.70 LINK O TYR B 192 K K B 403 1555 1555 2.59 LINK O ARG B 195 K K B 403 1555 1555 3.10 LINK O VAL B 198 K K B 403 1555 1555 2.68 LINK OG SER B 202 K K B 402 1555 1555 2.97 LINK O LEU B 203 K K B 402 1555 1555 2.51 LINK O PHE B 227 K K B 403 1555 1555 2.56 LINK OD2 ASP B 269 ZN ZN B 401 1555 1555 2.03 LINK ZN ZN B 401 O1 9RB B 404 1555 1555 2.01 LINK ZN ZN B 401 O 9RB B 404 1555 1555 2.01 LINK K K B 403 O HOH B 538 1555 1555 2.48 LINK K K B 403 O HOH B 553 1555 1555 2.98 CISPEP 1 ARG A 139 PRO A 140 0 3.25 CISPEP 2 PHE A 209 PRO A 210 0 -0.12 CISPEP 3 ARG B 139 PRO B 140 0 4.22 CISPEP 4 PHE B 209 PRO B 210 0 -2.08 SITE 1 AC1 4 ASP A 181 HIS A 183 ASP A 269 9RB A 404 SITE 1 AC2 5 ASP A 179 ASP A 181 HIS A 183 SER A 202 SITE 2 AC2 5 LEU A 203 SITE 1 AC3 7 TYR A 192 ARG A 195 VAL A 198 SER A 200 SITE 2 AC3 7 PHE A 227 HOH A 503 HOH A 527 SITE 1 AC4 14 THR A 24 ASP A 101 HIS A 143 HIS A 144 SITE 2 AC4 14 PHE A 153 ASP A 181 HIS A 183 PHE A 209 SITE 3 AC4 14 ASP A 269 TYR A 313 ZN A 401 HOH A 510 SITE 4 AC4 14 LEU B 340 PHE B 343 SITE 1 AC5 4 ASP B 181 HIS B 183 ASP B 269 9RB B 404 SITE 1 AC6 5 ASP B 179 ASP B 181 HIS B 183 SER B 202 SITE 2 AC6 5 LEU B 203 SITE 1 AC7 6 TYR B 192 ARG B 195 VAL B 198 PHE B 227 SITE 2 AC7 6 HOH B 538 HOH B 553 SITE 1 AC8 14 LEU A 340 PHE A 343 THR B 24 ASP B 101 SITE 2 AC8 14 HIS B 143 HIS B 144 PHE B 153 ASP B 181 SITE 3 AC8 14 HIS B 183 PHE B 209 ASP B 269 TYR B 313 SITE 4 AC8 14 ZN B 401 HOH B 502 CRYST1 82.190 82.190 217.030 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012167 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004608 0.00000