data_5LIJ # _entry.id 5LIJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5LIJ pdb_00005lij 10.2210/pdb5lij/pdb WWPDB D_1200000799 ? ? EMDB EMD-4054 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-07-26 2 'Structure model' 1 1 2017-08-02 3 'Structure model' 1 2 2019-12-11 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 3 'Structure model' Other 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' em_software 2 3 'Structure model' atom_sites 3 4 'Structure model' chem_comp_atom 4 4 'Structure model' chem_comp_bond 5 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_em_software.name' 2 2 'Structure model' '_em_software.version' 3 3 'Structure model' '_atom_sites.fract_transf_matrix[1][1]' 4 3 'Structure model' '_atom_sites.fract_transf_matrix[2][2]' 5 3 'Structure model' '_atom_sites.fract_transf_matrix[3][3]' 6 4 'Structure model' '_database_2.pdbx_DOI' 7 4 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5LIJ _pdbx_database_status.recvd_initial_deposition_date 2016-07-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details . _pdbx_database_related.db_id EMD-4054 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Novacek, J.' 1 ? 'Siborova, M.' 2 ? 'Benesik, M.' 3 ? 'Pantucek, R.' 4 ? 'Doskar, J.' 5 ? 'Plevka, P.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Proc. Natl. Acad. Sci. U.S.A.' _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 113 _citation.language ? _citation.page_first 9351 _citation.page_last 9356 _citation.title 'Structure and genome release of Twort-like Myoviridae phage with a double-layered baseplate.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.1605883113 _citation.pdbx_database_id_PubMed 27469164 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Novacek, J.' 1 ? primary 'Siborova, M.' 2 ? primary 'Benesik, M.' 3 ? primary 'Pantucek, R.' 4 ? primary 'Doskar, J.' 5 ? primary 'Plevka, P.' 6 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'polyalanine chain built in bacteriophage phi812K1-420 cement protein density map' _entity.formula_weight 10821.817 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ; _entity_poly.pdbx_seq_one_letter_code_can ;AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ; _entity_poly.pdbx_strand_id P _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 ALA n 1 3 ALA n 1 4 ALA n 1 5 ALA n 1 6 ALA n 1 7 ALA n 1 8 ALA n 1 9 ALA n 1 10 ALA n 1 11 ALA n 1 12 ALA n 1 13 ALA n 1 14 ALA n 1 15 ALA n 1 16 ALA n 1 17 ALA n 1 18 ALA n 1 19 ALA n 1 20 ALA n 1 21 ALA n 1 22 ALA n 1 23 ALA n 1 24 ALA n 1 25 ALA n 1 26 ALA n 1 27 ALA n 1 28 ALA n 1 29 ALA n 1 30 ALA n 1 31 ALA n 1 32 ALA n 1 33 ALA n 1 34 ALA n 1 35 ALA n 1 36 ALA n 1 37 ALA n 1 38 ALA n 1 39 ALA n 1 40 ALA n 1 41 ALA n 1 42 ALA n 1 43 ALA n 1 44 ALA n 1 45 ALA n 1 46 ALA n 1 47 ALA n 1 48 ALA n 1 49 ALA n 1 50 ALA n 1 51 ALA n 1 52 ALA n 1 53 ALA n 1 54 ALA n 1 55 ALA n 1 56 ALA n 1 57 ALA n 1 58 ALA n 1 59 ALA n 1 60 ALA n 1 61 ALA n 1 62 ALA n 1 63 ALA n 1 64 ALA n 1 65 ALA n 1 66 ALA n 1 67 ALA n 1 68 ALA n 1 69 ALA n 1 70 ALA n 1 71 ALA n 1 72 ALA n 1 73 ALA n 1 74 ALA n 1 75 ALA n 1 76 ALA n 1 77 ALA n 1 78 ALA n 1 79 ALA n 1 80 ALA n 1 81 ALA n 1 82 ALA n 1 83 ALA n 1 84 ALA n 1 85 ALA n 1 86 ALA n 1 87 ALA n 1 88 ALA n 1 89 ALA n 1 90 ALA n 1 91 ALA n 1 92 ALA n 1 93 ALA n 1 94 ALA n 1 95 ALA n 1 96 ALA n 1 97 ALA n 1 98 ALA n 1 99 ALA n 1 100 ALA n 1 101 ALA n 1 102 ALA n 1 103 ALA n 1 104 ALA n 1 105 ALA n 1 106 ALA n 1 107 ALA n 1 108 ALA n 1 109 ALA n 1 110 ALA n 1 111 ALA n 1 112 ALA n 1 113 ALA n 1 114 ALA n 1 115 ALA n 1 116 ALA n 1 117 ALA n 1 118 ALA n 1 119 ALA n 1 120 ALA n 1 121 ALA n 1 122 ALA n 1 123 ALA n 1 124 ALA n 1 125 ALA n 1 126 ALA n 1 127 ALA n 1 128 ALA n 1 129 ALA n 1 130 ALA n 1 131 ALA n 1 132 ALA n 1 133 ALA n 1 134 ALA n 1 135 ALA n 1 136 ALA n 1 137 ALA n 1 138 ALA n 1 139 ALA n 1 140 ALA n 1 141 ALA n 1 142 ALA n 1 143 ALA n 1 144 ALA n 1 145 ALA n 1 146 ALA n 1 147 ALA n 1 148 ALA n 1 149 ALA n 1 150 ALA n 1 151 ALA n 1 152 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 152 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus phage 812' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 307898 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name Staphylococcaceae _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 90964 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _chem_comp.id ALA _chem_comp.type 'L-peptide linking' _chem_comp.mon_nstd_flag y _chem_comp.name ALANINE _chem_comp.pdbx_synonyms ? _chem_comp.formula 'C3 H7 N O2' _chem_comp.formula_weight 89.093 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA P . n A 1 2 ALA 2 2 2 ALA ALA P . n A 1 3 ALA 3 3 3 ALA ALA P . n A 1 4 ALA 4 4 4 ALA ALA P . n A 1 5 ALA 5 5 5 ALA ALA P . n A 1 6 ALA 6 6 6 ALA ALA P . n A 1 7 ALA 7 7 7 ALA ALA P . n A 1 8 ALA 8 8 8 ALA ALA P . n A 1 9 ALA 9 9 9 ALA ALA P . n A 1 10 ALA 10 10 10 ALA ALA P . n A 1 11 ALA 11 11 11 ALA ALA P . n A 1 12 ALA 12 12 12 ALA ALA P . n A 1 13 ALA 13 13 13 ALA ALA P . n A 1 14 ALA 14 14 14 ALA ALA P . n A 1 15 ALA 15 15 15 ALA ALA P . n A 1 16 ALA 16 16 16 ALA ALA P . n A 1 17 ALA 17 17 17 ALA ALA P . n A 1 18 ALA 18 18 18 ALA ALA P . n A 1 19 ALA 19 19 19 ALA ALA P . n A 1 20 ALA 20 20 20 ALA ALA P . n A 1 21 ALA 21 21 21 ALA ALA P . n A 1 22 ALA 22 22 22 ALA ALA P . n A 1 23 ALA 23 23 23 ALA ALA P . n A 1 24 ALA 24 24 24 ALA ALA P . n A 1 25 ALA 25 25 25 ALA ALA P . n A 1 26 ALA 26 26 26 ALA ALA P . n A 1 27 ALA 27 27 27 ALA ALA P . n A 1 28 ALA 28 28 28 ALA ALA P . n A 1 29 ALA 29 29 29 ALA ALA P . n A 1 30 ALA 30 30 30 ALA ALA P . n A 1 31 ALA 31 31 31 ALA ALA P . n A 1 32 ALA 32 32 32 ALA ALA P . n A 1 33 ALA 33 33 33 ALA ALA P . n A 1 34 ALA 34 34 34 ALA ALA P . n A 1 35 ALA 35 35 35 ALA ALA P . n A 1 36 ALA 36 36 36 ALA ALA P . n A 1 37 ALA 37 37 37 ALA ALA P . n A 1 38 ALA 38 38 38 ALA ALA P . n A 1 39 ALA 39 39 39 ALA ALA P . n A 1 40 ALA 40 40 40 ALA ALA P . n A 1 41 ALA 41 41 41 ALA ALA P . n A 1 42 ALA 42 42 42 ALA ALA P . n A 1 43 ALA 43 43 43 ALA ALA P . n A 1 44 ALA 44 44 44 ALA ALA P . n A 1 45 ALA 45 45 45 ALA ALA P . n A 1 46 ALA 46 46 46 ALA ALA P . n A 1 47 ALA 47 47 47 ALA ALA P . n A 1 48 ALA 48 48 48 ALA ALA P . n A 1 49 ALA 49 49 49 ALA ALA P . n A 1 50 ALA 50 50 50 ALA ALA P . n A 1 51 ALA 51 51 51 ALA ALA P . n A 1 52 ALA 52 52 52 ALA ALA P . n A 1 53 ALA 53 53 53 ALA ALA P . n A 1 54 ALA 54 54 54 ALA ALA P . n A 1 55 ALA 55 55 55 ALA ALA P . n A 1 56 ALA 56 56 56 ALA ALA P . n A 1 57 ALA 57 57 57 ALA ALA P . n A 1 58 ALA 58 58 58 ALA ALA P . n A 1 59 ALA 59 59 59 ALA ALA P . n A 1 60 ALA 60 60 60 ALA ALA P . n A 1 61 ALA 61 61 61 ALA ALA P . n A 1 62 ALA 62 62 62 ALA ALA P . n A 1 63 ALA 63 63 63 ALA ALA P . n A 1 64 ALA 64 64 64 ALA ALA P . n A 1 65 ALA 65 65 65 ALA ALA P . n A 1 66 ALA 66 66 66 ALA ALA P . n A 1 67 ALA 67 67 67 ALA ALA P . n A 1 68 ALA 68 68 68 ALA ALA P . n A 1 69 ALA 69 69 69 ALA ALA P . n A 1 70 ALA 70 70 70 ALA ALA P . n A 1 71 ALA 71 71 71 ALA ALA P . n A 1 72 ALA 72 72 72 ALA ALA P . n A 1 73 ALA 73 73 73 ALA ALA P . n A 1 74 ALA 74 74 74 ALA ALA P . n A 1 75 ALA 75 75 75 ALA ALA P . n A 1 76 ALA 76 76 76 ALA ALA P . n A 1 77 ALA 77 77 77 ALA ALA P . n A 1 78 ALA 78 78 78 ALA ALA P . n A 1 79 ALA 79 79 79 ALA ALA P . n A 1 80 ALA 80 80 80 ALA ALA P . n A 1 81 ALA 81 81 81 ALA ALA P . n A 1 82 ALA 82 82 82 ALA ALA P . n A 1 83 ALA 83 83 83 ALA ALA P . n A 1 84 ALA 84 84 84 ALA ALA P . n A 1 85 ALA 85 85 85 ALA ALA P . n A 1 86 ALA 86 86 86 ALA ALA P . n A 1 87 ALA 87 87 87 ALA ALA P . n A 1 88 ALA 88 88 88 ALA ALA P . n A 1 89 ALA 89 89 89 ALA ALA P . n A 1 90 ALA 90 90 90 ALA ALA P . n A 1 91 ALA 91 91 91 ALA ALA P . n A 1 92 ALA 92 92 92 ALA ALA P . n A 1 93 ALA 93 93 93 ALA ALA P . n A 1 94 ALA 94 94 94 ALA ALA P . n A 1 95 ALA 95 95 95 ALA ALA P . n A 1 96 ALA 96 96 96 ALA ALA P . n A 1 97 ALA 97 97 97 ALA ALA P . n A 1 98 ALA 98 98 98 ALA ALA P . n A 1 99 ALA 99 99 99 ALA ALA P . n A 1 100 ALA 100 100 100 ALA ALA P . n A 1 101 ALA 101 101 101 ALA ALA P . n A 1 102 ALA 102 102 102 ALA ALA P . n A 1 103 ALA 103 103 103 ALA ALA P . n A 1 104 ALA 104 104 104 ALA ALA P . n A 1 105 ALA 105 105 105 ALA ALA P . n A 1 106 ALA 106 106 106 ALA ALA P . n A 1 107 ALA 107 107 107 ALA ALA P . n A 1 108 ALA 108 108 108 ALA ALA P . n A 1 109 ALA 109 109 109 ALA ALA P . n A 1 110 ALA 110 110 110 ALA ALA P . n A 1 111 ALA 111 111 111 ALA ALA P . n A 1 112 ALA 112 112 112 ALA ALA P . n A 1 113 ALA 113 113 113 ALA ALA P . n A 1 114 ALA 114 114 114 ALA ALA P . n A 1 115 ALA 115 115 115 ALA ALA P . n A 1 116 ALA 116 116 116 ALA ALA P . n A 1 117 ALA 117 117 117 ALA ALA P . n A 1 118 ALA 118 118 118 ALA ALA P . n A 1 119 ALA 119 119 119 ALA ALA P . n A 1 120 ALA 120 120 120 ALA ALA P . n A 1 121 ALA 121 121 121 ALA ALA P . n A 1 122 ALA 122 122 122 ALA ALA P . n A 1 123 ALA 123 123 123 ALA ALA P . n A 1 124 ALA 124 124 124 ALA ALA P . n A 1 125 ALA 125 125 125 ALA ALA P . n A 1 126 ALA 126 126 126 ALA ALA P . n A 1 127 ALA 127 127 127 ALA ALA P . n A 1 128 ALA 128 128 128 ALA ALA P . n A 1 129 ALA 129 129 129 ALA ALA P . n A 1 130 ALA 130 130 130 ALA ALA P . n A 1 131 ALA 131 131 131 ALA ALA P . n A 1 132 ALA 132 132 132 ALA ALA P . n A 1 133 ALA 133 133 133 ALA ALA P . n A 1 134 ALA 134 134 134 ALA ALA P . n A 1 135 ALA 135 135 135 ALA ALA P . n A 1 136 ALA 136 136 136 ALA ALA P . n A 1 137 ALA 137 137 137 ALA ALA P . n A 1 138 ALA 138 138 138 ALA ALA P . n A 1 139 ALA 139 139 139 ALA ALA P . n A 1 140 ALA 140 140 140 ALA ALA P . n A 1 141 ALA 141 141 141 ALA ALA P . n A 1 142 ALA 142 142 142 ALA ALA P . n A 1 143 ALA 143 143 143 ALA ALA P . n A 1 144 ALA 144 144 144 ALA ALA P . n A 1 145 ALA 145 145 145 ALA ALA P . n A 1 146 ALA 146 146 146 ALA ALA P . n A 1 147 ALA 147 147 147 ALA ALA P . n A 1 148 ALA 148 148 148 ALA ALA P . n A 1 149 ALA 149 149 149 ALA ALA P . n A 1 150 ALA 150 150 150 ALA ALA P . n A 1 151 ALA 151 151 151 ALA ALA P . n A 1 152 ALA 152 152 152 ALA ALA P . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5LIJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.000 _cell.length_a_esd ? _cell.length_b 1.000 _cell.length_b_esd ? _cell.length_c 1.000 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 1 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LIJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LIJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 5LIJ _struct.title 'polyalanine chain built in bacteriophage phi812K1-420 cement protein density map' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LIJ _struct_keywords.text 'polyvalent staphylococcal bactoriophage, Myoviridae, tail sheath, tail contraction, viral protein' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5LIJ _struct_ref.pdbx_db_accession 5LIJ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5LIJ _struct_ref_seq.pdbx_strand_id P _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 152 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5LIJ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 152 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 152 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 9430 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 42 ? ALA A 56 ? ALA P 42 ALA P 56 1 ? 15 HELX_P HELX_P2 AA2 ALA A 142 ? ALA A 148 ? ALA P 142 ALA P 148 5 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ALA A 12 ? ALA A 13 ? ALA P 12 ALA P 13 AA1 2 ALA A 95 ? ALA A 96 ? ALA P 95 ALA P 96 AA2 1 ALA A 21 ? ALA A 23 ? ALA P 21 ALA P 23 AA2 2 ALA A 132 ? ALA A 135 ? ALA P 132 ALA P 135 AA2 3 ALA A 114 ? ALA A 118 ? ALA P 114 ALA P 118 AA2 4 ALA A 104 ? ALA A 106 ? ALA P 104 ALA P 106 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ALA A 13 ? N ALA P 13 O ALA A 95 ? O ALA P 95 AA2 1 2 N ALA A 22 ? N ALA P 22 O ALA A 134 ? O ALA P 134 AA2 2 3 O ALA A 135 ? O ALA P 135 N ALA A 115 ? N ALA P 115 AA2 3 4 O ALA A 114 ? O ALA P 114 N ALA A 106 ? N ALA P 106 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB P ALA 1 ? ? CA P ALA 1 ? ? C P ALA 1 ? ? 96.83 110.10 -13.27 1.50 N 2 1 N P ALA 2 ? ? CA P ALA 2 ? ? CB P ALA 2 ? ? 100.37 110.10 -9.73 1.40 N 3 1 N P ALA 2 ? ? CA P ALA 2 ? ? C P ALA 2 ? ? 133.83 111.00 22.83 2.70 N 4 1 N P ALA 3 ? ? CA P ALA 3 ? ? CB P ALA 3 ? ? 118.88 110.10 8.78 1.40 N 5 1 N P ALA 40 ? ? CA P ALA 40 ? ? CB P ALA 40 ? ? 118.93 110.10 8.83 1.40 N 6 1 CB P ALA 66 ? ? CA P ALA 66 ? ? C P ALA 66 ? ? 91.02 110.10 -19.08 1.50 N 7 1 N P ALA 66 ? ? CA P ALA 66 ? ? C P ALA 66 ? ? 149.19 111.00 38.19 2.70 N 8 1 N P ALA 67 ? ? CA P ALA 67 ? ? CB P ALA 67 ? ? 137.65 110.10 27.55 1.40 N 9 1 CB P ALA 71 ? ? CA P ALA 71 ? ? C P ALA 71 ? ? 100.95 110.10 -9.15 1.50 N 10 1 N P ALA 88 ? ? CA P ALA 88 ? ? CB P ALA 88 ? ? 119.51 110.10 9.41 1.40 N 11 1 N P ALA 124 ? ? CA P ALA 124 ? ? CB P ALA 124 ? ? 94.68 110.10 -15.42 1.40 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA P 3 ? ? -179.67 -171.56 2 1 ALA P 5 ? ? -156.82 -159.66 3 1 ALA P 8 ? ? -172.93 -164.12 4 1 ALA P 46 ? ? -56.39 -73.46 5 1 ALA P 55 ? ? -46.48 -70.38 6 1 ALA P 59 ? ? -134.13 -65.56 7 1 ALA P 67 ? ? -145.94 -35.40 8 1 ALA P 71 ? ? -141.57 -30.85 9 1 ALA P 82 ? ? 59.24 19.36 10 1 ALA P 85 ? ? -57.14 -3.13 11 1 ALA P 109 ? ? -63.21 -176.59 12 1 ALA P 110 ? ? -65.62 88.70 13 1 ALA P 111 ? ? -171.37 -162.74 14 1 ALA P 123 ? ? -140.13 -123.03 15 1 ALA P 124 ? ? -90.85 -63.68 16 1 ALA P 138 ? ? -179.57 -175.64 17 1 ALA P 139 ? ? -127.50 -169.78 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 ALA P 32 ? ? ALA P 33 ? ? -149.86 2 1 ALA P 66 ? ? ALA P 67 ? ? -125.82 3 1 ALA P 77 ? ? ALA P 78 ? ? -145.27 4 1 ALA P 78 ? ? ALA P 79 ? ? -149.41 5 1 ALA P 86 ? ? ALA P 87 ? ? -149.84 6 1 ALA P 98 ? ? ALA P 99 ? ? -142.61 7 1 ALA P 125 ? ? ALA P 126 ? ? -143.53 8 1 ALA P 130 ? ? ALA P 131 ? ? -134.27 9 1 ALA P 142 ? ? ALA P 143 ? ? -143.48 # _em_3d_reconstruction.entry_id 5LIJ _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm 'FOURIER SPACE' _em_3d_reconstruction.details ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 12018 _em_3d_reconstruction.resolution 4.2 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type HELICAL _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.euler_angles_details ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 8.0 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'Staphylococcus phage 812' _em_entity_assembly.source NATURAL _em_entity_assembly.type VIRUS _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 5LIJ _em_image_scans.id 1 _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image 7 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.citation_id ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? # _em_imaging.id 1 _em_imaging.entry_id 5LIJ _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 100 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.specimen_holder_type ? _em_imaging.citation_id ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R2/1' _em_sample_support.method ? _em_sample_support.film_material ? _em_sample_support.citation_id ? # _em_virus_entity.entity_assembly_id 1 _em_virus_entity.empty NO _em_virus_entity.enveloped NO _em_virus_entity.virus_isolate SPECIES _em_virus_entity.virus_type VIRION _em_virus_entity.id 1 _em_virus_entity.virus_host_category ? _em_virus_entity.details ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 295 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.entry_id 5LIJ _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 5LIJ _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 50 mM TrisHCl tris 1 2 10 mM NaCl 'sodium chloride' 1 3 10 mM CaCl2 'calcium chloride' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING ONLY' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units . _em_entity_assembly_molwt.value . # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 307898 _em_entity_assembly_naturalsource.organ . _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Staphylococcus phage 812' _em_entity_assembly_naturalsource.strain K420 _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 20 _em_image_recording.average_exposure_time 0.86 _em_image_recording.details ? _em_image_recording.detector_mode INTEGRATING _em_image_recording.film_or_detector_model 'FEI FALCON II (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? ? ? 1 ? ? 2 'IMAGE ACQUISITION' ? EPU ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 4 1 ? ? 5 'CTF CORRECTION' ? ? ? 1 ? ? 6 'LAYERLINE INDEXING' ? ? ? ? ? ? 7 'DIFFRACTION INDEXING' ? ? ? ? ? ? 8 'MODEL FITTING' ? ? ? ? ? ? 9 'MODEL REFINEMENT' ? ? ? ? ? ? 10 OTHER ? ? ? ? ? ? 11 'INITIAL EULER ASSIGNMENT' ? JALIGN ? 1 ? ? 12 'FINAL EULER ASSIGNMENT' ? JALIGN ? 1 ? ? 13 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 14 CLASSIFICATION ? RELION ? 1 ? ? 15 RECONSTRUCTION ? J3DR ? 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 1 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _em_virus_natural_host.id 1 _em_virus_natural_host.entity_assembly_id 1 _em_virus_natural_host.ncbi_tax_id 1280 _em_virus_natural_host.organism 'Staphylococcus aureus' _em_virus_natural_host.strain ? # _em_virus_shell.id 1 _em_virus_shell.entity_assembly_id 1 _em_virus_shell.diameter 1100 _em_virus_shell.name ? _em_virus_shell.triangulation 16 # _atom_sites.entry_id 5LIJ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_