data_5LJ2 # _entry.id 5LJ2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5LJ2 WWPDB D_1200000819 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5LJ2 _pdbx_database_status.recvd_initial_deposition_date 2016-07-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chung, C.' 1 'Bamborough, P.' 2 'Demont, E.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 55 _citation.language ? _citation.page_first 11382 _citation.page_last 11386 _citation.title 'A Chemical Probe for the ATAD2 Bromodomain.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.201603928 _citation.pdbx_database_id_PubMed 27530368 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Bamborough, P.' 1 primary 'Chung, C.W.' 2 primary 'Demont, E.H.' 3 primary 'Furze, R.C.' 4 primary 'Bannister, A.J.' 5 primary 'Che, K.H.' 6 primary 'Diallo, H.' 7 primary 'Douault, C.' 8 primary 'Grandi, P.' 9 primary 'Kouzarides, T.' 10 primary 'Michon, A.M.' 11 primary 'Mitchell, D.J.' 12 primary 'Prinjha, R.K.' 13 primary 'Rau, C.' 14 primary 'Robson, S.' 15 primary 'Sheppard, R.J.' 16 primary 'Upton, R.' 17 primary 'Watson, R.J.' 18 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5LJ2 _cell.details ? _cell.formula_units_Z ? _cell.length_a 37.520 _cell.length_a_esd ? _cell.length_b 44.280 _cell.length_b_esd ? _cell.length_c 78.100 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LJ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Bromodomain-containing protein 4' 15099.380 1 ? ? ? 'SM residues residual from cleavage of expression tag' 2 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 3 non-polymer syn ;5-(5-aminopyridin-3-yl)-8-(((3R,4R)-3-((1,1-dioxidotetrahydro-2H-thiopyran-4-yl)methoxy)piperidin-4-yl)amino)-3-methyl-1,7-naphthyridin-2(1H)-one ; 512.624 1 ? ? ? ? 4 water nat water 18.015 259 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein HUNK1' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWN AQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE ; _entity_poly.pdbx_seq_one_letter_code_can ;SMNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWN AQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 MET n 1 3 ASN n 1 4 PRO n 1 5 PRO n 1 6 PRO n 1 7 PRO n 1 8 GLU n 1 9 THR n 1 10 SER n 1 11 ASN n 1 12 PRO n 1 13 ASN n 1 14 LYS n 1 15 PRO n 1 16 LYS n 1 17 ARG n 1 18 GLN n 1 19 THR n 1 20 ASN n 1 21 GLN n 1 22 LEU n 1 23 GLN n 1 24 TYR n 1 25 LEU n 1 26 LEU n 1 27 ARG n 1 28 VAL n 1 29 VAL n 1 30 LEU n 1 31 LYS n 1 32 THR n 1 33 LEU n 1 34 TRP n 1 35 LYS n 1 36 HIS n 1 37 GLN n 1 38 PHE n 1 39 ALA n 1 40 TRP n 1 41 PRO n 1 42 PHE n 1 43 GLN n 1 44 GLN n 1 45 PRO n 1 46 VAL n 1 47 ASP n 1 48 ALA n 1 49 VAL n 1 50 LYS n 1 51 LEU n 1 52 ASN n 1 53 LEU n 1 54 PRO n 1 55 ASP n 1 56 TYR n 1 57 TYR n 1 58 LYS n 1 59 ILE n 1 60 ILE n 1 61 LYS n 1 62 THR n 1 63 PRO n 1 64 MET n 1 65 ASP n 1 66 MET n 1 67 GLY n 1 68 THR n 1 69 ILE n 1 70 LYS n 1 71 LYS n 1 72 ARG n 1 73 LEU n 1 74 GLU n 1 75 ASN n 1 76 ASN n 1 77 TYR n 1 78 TYR n 1 79 TRP n 1 80 ASN n 1 81 ALA n 1 82 GLN n 1 83 GLU n 1 84 CYS n 1 85 ILE n 1 86 GLN n 1 87 ASP n 1 88 PHE n 1 89 ASN n 1 90 THR n 1 91 MET n 1 92 PHE n 1 93 THR n 1 94 ASN n 1 95 CYS n 1 96 TYR n 1 97 ILE n 1 98 TYR n 1 99 ASN n 1 100 LYS n 1 101 PRO n 1 102 GLY n 1 103 ASP n 1 104 ASP n 1 105 ILE n 1 106 VAL n 1 107 LEU n 1 108 MET n 1 109 ALA n 1 110 GLU n 1 111 ALA n 1 112 LEU n 1 113 GLU n 1 114 LYS n 1 115 LEU n 1 116 PHE n 1 117 LEU n 1 118 GLN n 1 119 LYS n 1 120 ILE n 1 121 ASN n 1 122 GLU n 1 123 LEU n 1 124 PRO n 1 125 THR n 1 126 GLU n 1 127 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 127 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BRD4, HUNK1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET26b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code BRD4_HUMAN _struct_ref.pdbx_db_accession O60885 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;STNPPPPETSNPNKPKRQTNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWN AQECIQDFNTMFTNCYIYNKPGDDIVLMAEALEKLFLQKINELPTEE ; _struct_ref.pdbx_align_begin 42 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5LJ2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 127 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O60885 _struct_ref_seq.db_align_beg 42 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 168 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 42 _struct_ref_seq.pdbx_auth_seq_align_end 168 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 5LJ2 _struct_ref_seq_dif.mon_id MET _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 2 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O60885 _struct_ref_seq_dif.db_mon_id THR _struct_ref_seq_dif.pdbx_seq_db_seq_num 43 _struct_ref_seq_dif.details conflict _struct_ref_seq_dif.pdbx_auth_seq_num 43 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6XW non-polymer . ;5-(5-aminopyridin-3-yl)-8-(((3R,4R)-3-((1,1-dioxidotetrahydro-2H-thiopyran-4-yl)methoxy)piperidin-4-yl)amino)-3-methyl-1,7-naphthyridin-2(1H)-one ; ? 'C25 H32 N6 O4 S' 512.624 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LJ2 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.1 Tris pH 8.5, 0.2M Li2SO4, 20% v/v PEG400 at 20C' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2013-04-10 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97565 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID23-1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97565 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID23-1 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5LJ2 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.19 _reflns.d_resolution_low 44.28 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 39426 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 92.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.6 _reflns.pdbx_Rmerge_I_obs 0.052 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.19 _reflns_shell.d_res_low 1.23 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.8 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 58.5 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.535 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 2.5 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.57 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] -0.14 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -0.43 _refine.B_iso_max ? _refine.B_iso_mean 17.817 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.967 _refine.correlation_coeff_Fo_to_Fc_free 0.961 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5LJ2 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.19 _refine.ls_d_res_low 17.27 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 37417 _refine.ls_number_reflns_R_free 1929 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 92.57 _refine.ls_percent_reflns_R_free 4.9 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.18762 _refine.ls_R_factor_R_free 0.20760 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.18660 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.049 _refine.pdbx_overall_ESU_R_Free 0.050 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 1.515 _refine.overall_SU_ML 0.034 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1062 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.number_atoms_solvent 259 _refine_hist.number_atoms_total 1369 _refine_hist.d_res_high 1.19 _refine_hist.d_res_low 17.27 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.004 0.019 1177 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 1131 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 0.982 1.973 1603 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.804 3.000 2621 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 4.788 5.000 134 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 35.333 25.714 56 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 11.048 15.000 210 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 9.790 15.000 4 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.058 0.200 165 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 0.021 1301 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 261 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 0.601 1.794 521 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 0.601 1.788 520 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 1.046 4.025 654 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 1.046 4.036 655 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 0.819 2.040 656 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 0.818 2.041 657 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 1.413 4.486 948 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 4.654 9.856 1660 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 4.255 8.878 1513 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.190 _refine_ls_shell.d_res_low 1.221 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 93 _refine_ls_shell.number_reflns_R_work 1610 _refine_ls_shell.percent_reflns_obs 55.45 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.291 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.276 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5LJ2 _struct.title ;N-TERMINAL BROMODOMAIN OF HUMAN BRD4 WITH 5-(5-aminopyridin-3-yl)-8-(((3R,4R)-3-((1,1-dioxidotetrahydro-2H-thiopyran-4-yl)methoxy)piperidin-4-yl)amino)-3-methyl-1,7-naphthyridin-2(1H)-one ; _struct.pdbx_descriptor 'Bromodomain-containing protein 4' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LJ2 _struct_keywords.text 'INHIBITOR, HISTONE, EPIGENETIC READER, BROMODOMAIN, BRD4, BROMODOMAIN CONTAINING PROTEIN 4, ANTAGONIST, transcription' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 19 ? VAL A 28 ? THR A 60 VAL A 69 1 ? 10 HELX_P HELX_P2 AA2 VAL A 28 ? LYS A 35 ? VAL A 69 LYS A 76 1 ? 8 HELX_P HELX_P3 AA3 ALA A 39 ? GLN A 43 ? ALA A 80 GLN A 84 5 ? 5 HELX_P HELX_P4 AA4 ASP A 55 ? ILE A 60 ? ASP A 96 ILE A 101 1 ? 6 HELX_P HELX_P5 AA5 ASP A 65 ? ASN A 75 ? ASP A 106 ASN A 116 1 ? 11 HELX_P HELX_P6 AA6 ASN A 80 ? ASN A 99 ? ASN A 121 ASN A 140 1 ? 20 HELX_P HELX_P7 AA7 ASP A 103 ? ASN A 121 ? ASP A 144 ASN A 162 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 201 ? 6 'binding site for residue EDO A 201' AC2 Software A EDO 202 ? 7 'binding site for residue EDO A 202' AC3 Software A EDO 203 ? 4 'binding site for residue EDO A 203' AC4 Software A 6XW 204 ? 16 'binding site for residue 6XW A 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLN A 82 ? GLN A 123 . ? 1_555 ? 2 AC1 6 ILE A 85 ? ILE A 126 . ? 1_555 ? 3 AC1 6 HOH F . ? HOH A 304 . ? 1_555 ? 4 AC1 6 HOH F . ? HOH A 316 . ? 1_555 ? 5 AC1 6 HOH F . ? HOH A 333 . ? 1_555 ? 6 AC1 6 HOH F . ? HOH A 465 . ? 1_555 ? 7 AC2 7 ILE A 59 ? ILE A 100 . ? 1_555 ? 8 AC2 7 ILE A 60 ? ILE A 101 . ? 1_555 ? 9 AC2 7 LYS A 61 ? LYS A 102 . ? 1_555 ? 10 AC2 7 THR A 62 ? THR A 103 . ? 1_555 ? 11 AC2 7 ASN A 94 ? ASN A 135 . ? 1_555 ? 12 AC2 7 HOH F . ? HOH A 314 . ? 1_555 ? 13 AC2 7 HOH F . ? HOH A 319 . ? 1_555 ? 14 AC3 4 ILE A 97 ? ILE A 138 . ? 1_555 ? 15 AC3 4 GLN A 118 ? GLN A 159 . ? 4_465 ? 16 AC3 4 LYS A 119 ? LYS A 160 . ? 4_465 ? 17 AC3 4 HOH F . ? HOH A 311 . ? 1_555 ? 18 AC4 16 LYS A 16 ? LYS A 57 . ? 2_674 ? 19 AC4 16 ARG A 17 ? ARG A 58 . ? 2_674 ? 20 AC4 16 GLN A 18 ? GLN A 59 . ? 2_674 ? 21 AC4 16 TRP A 40 ? TRP A 81 . ? 1_555 ? 22 AC4 16 GLN A 44 ? GLN A 85 . ? 1_555 ? 23 AC4 16 LEU A 51 ? LEU A 92 . ? 1_555 ? 24 AC4 16 LYS A 58 ? LYS A 99 . ? 4_575 ? 25 AC4 16 ASN A 99 ? ASN A 140 . ? 1_555 ? 26 AC4 16 ASP A 103 ? ASP A 144 . ? 1_555 ? 27 AC4 16 ILE A 105 ? ILE A 146 . ? 1_555 ? 28 AC4 16 HOH F . ? HOH A 302 . ? 1_555 ? 29 AC4 16 HOH F . ? HOH A 344 . ? 1_555 ? 30 AC4 16 HOH F . ? HOH A 349 . ? 1_555 ? 31 AC4 16 HOH F . ? HOH A 359 . ? 1_555 ? 32 AC4 16 HOH F . ? HOH A 419 . ? 4_575 ? 33 AC4 16 HOH F . ? HOH A 424 . ? 4_575 ? # _atom_sites.entry_id 5LJ2 _atom_sites.fract_transf_matrix[1][1] 0.026652 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022584 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012804 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 42 42 SER SER A . n A 1 2 MET 2 43 43 MET MET A . n A 1 3 ASN 3 44 44 ASN ASN A . n A 1 4 PRO 4 45 45 PRO PRO A . n A 1 5 PRO 5 46 46 PRO PRO A . n A 1 6 PRO 6 47 47 PRO PRO A . n A 1 7 PRO 7 48 48 PRO PRO A . n A 1 8 GLU 8 49 49 GLU GLU A . n A 1 9 THR 9 50 50 THR THR A . n A 1 10 SER 10 51 51 SER SER A . n A 1 11 ASN 11 52 52 ASN ASN A . n A 1 12 PRO 12 53 53 PRO PRO A . n A 1 13 ASN 13 54 54 ASN ASN A . n A 1 14 LYS 14 55 55 LYS LYS A . n A 1 15 PRO 15 56 56 PRO PRO A . n A 1 16 LYS 16 57 57 LYS LYS A . n A 1 17 ARG 17 58 58 ARG ARG A . n A 1 18 GLN 18 59 59 GLN GLN A . n A 1 19 THR 19 60 60 THR THR A . n A 1 20 ASN 20 61 61 ASN ASN A . n A 1 21 GLN 21 62 62 GLN GLN A . n A 1 22 LEU 22 63 63 LEU LEU A . n A 1 23 GLN 23 64 64 GLN GLN A . n A 1 24 TYR 24 65 65 TYR TYR A . n A 1 25 LEU 25 66 66 LEU LEU A . n A 1 26 LEU 26 67 67 LEU LEU A . n A 1 27 ARG 27 68 68 ARG ARG A . n A 1 28 VAL 28 69 69 VAL VAL A . n A 1 29 VAL 29 70 70 VAL VAL A . n A 1 30 LEU 30 71 71 LEU LEU A . n A 1 31 LYS 31 72 72 LYS LYS A . n A 1 32 THR 32 73 73 THR THR A . n A 1 33 LEU 33 74 74 LEU LEU A . n A 1 34 TRP 34 75 75 TRP TRP A . n A 1 35 LYS 35 76 76 LYS LYS A . n A 1 36 HIS 36 77 77 HIS HIS A . n A 1 37 GLN 37 78 78 GLN GLN A . n A 1 38 PHE 38 79 79 PHE PHE A . n A 1 39 ALA 39 80 80 ALA ALA A . n A 1 40 TRP 40 81 81 TRP TRP A . n A 1 41 PRO 41 82 82 PRO PRO A . n A 1 42 PHE 42 83 83 PHE PHE A . n A 1 43 GLN 43 84 84 GLN GLN A . n A 1 44 GLN 44 85 85 GLN GLN A . n A 1 45 PRO 45 86 86 PRO PRO A . n A 1 46 VAL 46 87 87 VAL VAL A . n A 1 47 ASP 47 88 88 ASP ASP A . n A 1 48 ALA 48 89 89 ALA ALA A . n A 1 49 VAL 49 90 90 VAL VAL A . n A 1 50 LYS 50 91 91 LYS LYS A . n A 1 51 LEU 51 92 92 LEU LEU A . n A 1 52 ASN 52 93 93 ASN ASN A . n A 1 53 LEU 53 94 94 LEU LEU A . n A 1 54 PRO 54 95 95 PRO PRO A . n A 1 55 ASP 55 96 96 ASP ASP A . n A 1 56 TYR 56 97 97 TYR TYR A . n A 1 57 TYR 57 98 98 TYR TYR A . n A 1 58 LYS 58 99 99 LYS LYS A . n A 1 59 ILE 59 100 100 ILE ILE A . n A 1 60 ILE 60 101 101 ILE ILE A . n A 1 61 LYS 61 102 102 LYS LYS A . n A 1 62 THR 62 103 103 THR THR A . n A 1 63 PRO 63 104 104 PRO PRO A . n A 1 64 MET 64 105 105 MET MET A . n A 1 65 ASP 65 106 106 ASP ASP A . n A 1 66 MET 66 107 107 MET MET A . n A 1 67 GLY 67 108 108 GLY GLY A . n A 1 68 THR 68 109 109 THR THR A . n A 1 69 ILE 69 110 110 ILE ILE A . n A 1 70 LYS 70 111 111 LYS LYS A . n A 1 71 LYS 71 112 112 LYS LYS A . n A 1 72 ARG 72 113 113 ARG ARG A . n A 1 73 LEU 73 114 114 LEU LEU A . n A 1 74 GLU 74 115 115 GLU GLU A . n A 1 75 ASN 75 116 116 ASN ASN A . n A 1 76 ASN 76 117 117 ASN ASN A . n A 1 77 TYR 77 118 118 TYR TYR A . n A 1 78 TYR 78 119 119 TYR TYR A . n A 1 79 TRP 79 120 120 TRP TRP A . n A 1 80 ASN 80 121 121 ASN ASN A . n A 1 81 ALA 81 122 122 ALA ALA A . n A 1 82 GLN 82 123 123 GLN GLN A . n A 1 83 GLU 83 124 124 GLU GLU A . n A 1 84 CYS 84 125 125 CYS CYS A . n A 1 85 ILE 85 126 126 ILE ILE A . n A 1 86 GLN 86 127 127 GLN GLN A . n A 1 87 ASP 87 128 128 ASP ASP A . n A 1 88 PHE 88 129 129 PHE PHE A . n A 1 89 ASN 89 130 130 ASN ASN A . n A 1 90 THR 90 131 131 THR THR A . n A 1 91 MET 91 132 132 MET MET A . n A 1 92 PHE 92 133 133 PHE PHE A . n A 1 93 THR 93 134 134 THR THR A . n A 1 94 ASN 94 135 135 ASN ASN A . n A 1 95 CYS 95 136 136 CYS CYS A . n A 1 96 TYR 96 137 137 TYR TYR A . n A 1 97 ILE 97 138 138 ILE ILE A . n A 1 98 TYR 98 139 139 TYR TYR A . n A 1 99 ASN 99 140 140 ASN ASN A . n A 1 100 LYS 100 141 141 LYS LYS A . n A 1 101 PRO 101 142 142 PRO PRO A . n A 1 102 GLY 102 143 143 GLY GLY A . n A 1 103 ASP 103 144 144 ASP ASP A . n A 1 104 ASP 104 145 145 ASP ASP A . n A 1 105 ILE 105 146 146 ILE ILE A . n A 1 106 VAL 106 147 147 VAL VAL A . n A 1 107 LEU 107 148 148 LEU LEU A . n A 1 108 MET 108 149 149 MET MET A . n A 1 109 ALA 109 150 150 ALA ALA A . n A 1 110 GLU 110 151 151 GLU GLU A . n A 1 111 ALA 111 152 152 ALA ALA A . n A 1 112 LEU 112 153 153 LEU LEU A . n A 1 113 GLU 113 154 154 GLU GLU A . n A 1 114 LYS 114 155 155 LYS LYS A . n A 1 115 LEU 115 156 156 LEU LEU A . n A 1 116 PHE 116 157 157 PHE PHE A . n A 1 117 LEU 117 158 158 LEU LEU A . n A 1 118 GLN 118 159 159 GLN GLN A . n A 1 119 LYS 119 160 160 LYS LYS A . n A 1 120 ILE 120 161 161 ILE ILE A . n A 1 121 ASN 121 162 162 ASN ASN A . n A 1 122 GLU 122 163 163 GLU GLU A . n A 1 123 LEU 123 164 164 LEU LEU A . n A 1 124 PRO 124 165 165 PRO PRO A . n A 1 125 THR 125 166 166 THR THR A . n A 1 126 GLU 126 167 167 GLU GLU A . n A 1 127 GLU 127 168 168 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 201 2 EDO EDO A . C 2 EDO 1 202 4 EDO EDO A . D 2 EDO 1 203 5 EDO EDO A . E 3 6XW 1 204 1 6XW LIG A . F 4 HOH 1 301 250 HOH HOH A . F 4 HOH 2 302 24 HOH HOH A . F 4 HOH 3 303 258 HOH HOH A . F 4 HOH 4 304 83 HOH HOH A . F 4 HOH 5 305 235 HOH HOH A . F 4 HOH 6 306 69 HOH HOH A . F 4 HOH 7 307 25 HOH HOH A . F 4 HOH 8 308 21 HOH HOH A . F 4 HOH 9 309 182 HOH HOH A . F 4 HOH 10 310 57 HOH HOH A . F 4 HOH 11 311 204 HOH HOH A . F 4 HOH 12 312 26 HOH HOH A . F 4 HOH 13 313 19 HOH HOH A . F 4 HOH 14 314 218 HOH HOH A . F 4 HOH 15 315 14 HOH HOH A . F 4 HOH 16 316 156 HOH HOH A . F 4 HOH 17 317 158 HOH HOH A . F 4 HOH 18 318 74 HOH HOH A . F 4 HOH 19 319 200 HOH HOH A . F 4 HOH 20 320 79 HOH HOH A . F 4 HOH 21 321 193 HOH HOH A . F 4 HOH 22 322 157 HOH HOH A . F 4 HOH 23 323 32 HOH HOH A . F 4 HOH 24 324 216 HOH HOH A . F 4 HOH 25 325 23 HOH HOH A . F 4 HOH 26 326 179 HOH HOH A . F 4 HOH 27 327 117 HOH HOH A . F 4 HOH 28 328 143 HOH HOH A . F 4 HOH 29 329 1 HOH HOH A . F 4 HOH 30 330 40 HOH HOH A . F 4 HOH 31 331 60 HOH HOH A . F 4 HOH 32 332 36 HOH HOH A . F 4 HOH 33 333 212 HOH HOH A . F 4 HOH 34 334 155 HOH HOH A . F 4 HOH 35 335 188 HOH HOH A . F 4 HOH 36 336 11 HOH HOH A . F 4 HOH 37 337 30 HOH HOH A . F 4 HOH 38 338 141 HOH HOH A . F 4 HOH 39 339 93 HOH HOH A . F 4 HOH 40 340 190 HOH HOH A . F 4 HOH 41 341 238 HOH HOH A . F 4 HOH 42 342 9 HOH HOH A . F 4 HOH 43 343 31 HOH HOH A . F 4 HOH 44 344 208 HOH HOH A . F 4 HOH 45 345 22 HOH HOH A . F 4 HOH 46 346 114 HOH HOH A . F 4 HOH 47 347 49 HOH HOH A . F 4 HOH 48 348 38 HOH HOH A . F 4 HOH 49 349 213 HOH HOH A . F 4 HOH 50 350 62 HOH HOH A . F 4 HOH 51 351 8 HOH HOH A . F 4 HOH 52 352 56 HOH HOH A . F 4 HOH 53 353 50 HOH HOH A . F 4 HOH 54 354 45 HOH HOH A . F 4 HOH 55 355 43 HOH HOH A . F 4 HOH 56 356 145 HOH HOH A . F 4 HOH 57 357 72 HOH HOH A . F 4 HOH 58 358 4 HOH HOH A . F 4 HOH 59 359 17 HOH HOH A . F 4 HOH 60 360 122 HOH HOH A . F 4 HOH 61 361 88 HOH HOH A . F 4 HOH 62 362 70 HOH HOH A . F 4 HOH 63 363 42 HOH HOH A . F 4 HOH 64 364 78 HOH HOH A . F 4 HOH 65 365 6 HOH HOH A . F 4 HOH 66 366 82 HOH HOH A . F 4 HOH 67 367 194 HOH HOH A . F 4 HOH 68 368 178 HOH HOH A . F 4 HOH 69 369 29 HOH HOH A . F 4 HOH 70 370 63 HOH HOH A . F 4 HOH 71 371 176 HOH HOH A . F 4 HOH 72 372 68 HOH HOH A . F 4 HOH 73 373 144 HOH HOH A . F 4 HOH 74 374 7 HOH HOH A . F 4 HOH 75 375 177 HOH HOH A . F 4 HOH 76 376 12 HOH HOH A . F 4 HOH 77 377 241 HOH HOH A . F 4 HOH 78 378 35 HOH HOH A . F 4 HOH 79 379 219 HOH HOH A . F 4 HOH 80 380 99 HOH HOH A . F 4 HOH 81 381 33 HOH HOH A . F 4 HOH 82 382 244 HOH HOH A . F 4 HOH 83 383 126 HOH HOH A . F 4 HOH 84 384 130 HOH HOH A . F 4 HOH 85 385 191 HOH HOH A . F 4 HOH 86 386 173 HOH HOH A . F 4 HOH 87 387 95 HOH HOH A . F 4 HOH 88 388 28 HOH HOH A . F 4 HOH 89 389 104 HOH HOH A . F 4 HOH 90 390 85 HOH HOH A . F 4 HOH 91 391 192 HOH HOH A . F 4 HOH 92 392 197 HOH HOH A . F 4 HOH 93 393 215 HOH HOH A . F 4 HOH 94 394 18 HOH HOH A . F 4 HOH 95 395 44 HOH HOH A . F 4 HOH 96 396 86 HOH HOH A . F 4 HOH 97 397 110 HOH HOH A . F 4 HOH 98 398 73 HOH HOH A . F 4 HOH 99 399 3 HOH HOH A . F 4 HOH 100 400 253 HOH HOH A . F 4 HOH 101 401 27 HOH HOH A . F 4 HOH 102 402 148 HOH HOH A . F 4 HOH 103 403 58 HOH HOH A . F 4 HOH 104 404 174 HOH HOH A . F 4 HOH 105 405 84 HOH HOH A . F 4 HOH 106 406 54 HOH HOH A . F 4 HOH 107 407 175 HOH HOH A . F 4 HOH 108 408 13 HOH HOH A . F 4 HOH 109 409 209 HOH HOH A . F 4 HOH 110 410 100 HOH HOH A . F 4 HOH 111 411 248 HOH HOH A . F 4 HOH 112 412 131 HOH HOH A . F 4 HOH 113 413 80 HOH HOH A . F 4 HOH 114 414 51 HOH HOH A . F 4 HOH 115 415 119 HOH HOH A . F 4 HOH 116 416 98 HOH HOH A . F 4 HOH 117 417 189 HOH HOH A . F 4 HOH 118 418 226 HOH HOH A . F 4 HOH 119 419 139 HOH HOH A . F 4 HOH 120 420 168 HOH HOH A . F 4 HOH 121 421 206 HOH HOH A . F 4 HOH 122 422 159 HOH HOH A . F 4 HOH 123 423 183 HOH HOH A . F 4 HOH 124 424 220 HOH HOH A . F 4 HOH 125 425 249 HOH HOH A . F 4 HOH 126 426 46 HOH HOH A . F 4 HOH 127 427 66 HOH HOH A . F 4 HOH 128 428 41 HOH HOH A . F 4 HOH 129 429 16 HOH HOH A . F 4 HOH 130 430 96 HOH HOH A . F 4 HOH 131 431 39 HOH HOH A . F 4 HOH 132 432 2 HOH HOH A . F 4 HOH 133 433 247 HOH HOH A . F 4 HOH 134 434 140 HOH HOH A . F 4 HOH 135 435 10 HOH HOH A . F 4 HOH 136 436 37 HOH HOH A . F 4 HOH 137 437 196 HOH HOH A . F 4 HOH 138 438 223 HOH HOH A . F 4 HOH 139 439 77 HOH HOH A . F 4 HOH 140 440 164 HOH HOH A . F 4 HOH 141 441 55 HOH HOH A . F 4 HOH 142 442 252 HOH HOH A . F 4 HOH 143 443 101 HOH HOH A . F 4 HOH 144 444 245 HOH HOH A . F 4 HOH 145 445 89 HOH HOH A . F 4 HOH 146 446 222 HOH HOH A . F 4 HOH 147 447 81 HOH HOH A . F 4 HOH 148 448 92 HOH HOH A . F 4 HOH 149 449 111 HOH HOH A . F 4 HOH 150 450 103 HOH HOH A . F 4 HOH 151 451 5 HOH HOH A . F 4 HOH 152 452 167 HOH HOH A . F 4 HOH 153 453 225 HOH HOH A . F 4 HOH 154 454 152 HOH HOH A . F 4 HOH 155 455 52 HOH HOH A . F 4 HOH 156 456 231 HOH HOH A . F 4 HOH 157 457 240 HOH HOH A . F 4 HOH 158 458 118 HOH HOH A . F 4 HOH 159 459 251 HOH HOH A . F 4 HOH 160 460 256 HOH HOH A . F 4 HOH 161 461 239 HOH HOH A . F 4 HOH 162 462 224 HOH HOH A . F 4 HOH 163 463 153 HOH HOH A . F 4 HOH 164 464 142 HOH HOH A . F 4 HOH 165 465 97 HOH HOH A . F 4 HOH 166 466 71 HOH HOH A . F 4 HOH 167 467 67 HOH HOH A . F 4 HOH 168 468 15 HOH HOH A . F 4 HOH 169 469 133 HOH HOH A . F 4 HOH 170 470 61 HOH HOH A . F 4 HOH 171 471 102 HOH HOH A . F 4 HOH 172 472 259 HOH HOH A . F 4 HOH 173 473 124 HOH HOH A . F 4 HOH 174 474 233 HOH HOH A . F 4 HOH 175 475 229 HOH HOH A . F 4 HOH 176 476 230 HOH HOH A . F 4 HOH 177 477 109 HOH HOH A . F 4 HOH 178 478 123 HOH HOH A . F 4 HOH 179 479 76 HOH HOH A . F 4 HOH 180 480 227 HOH HOH A . F 4 HOH 181 481 64 HOH HOH A . F 4 HOH 182 482 236 HOH HOH A . F 4 HOH 183 483 47 HOH HOH A . F 4 HOH 184 484 138 HOH HOH A . F 4 HOH 185 485 137 HOH HOH A . F 4 HOH 186 486 161 HOH HOH A . F 4 HOH 187 487 254 HOH HOH A . F 4 HOH 188 488 132 HOH HOH A . F 4 HOH 189 489 201 HOH HOH A . F 4 HOH 190 490 207 HOH HOH A . F 4 HOH 191 491 147 HOH HOH A . F 4 HOH 192 492 171 HOH HOH A . F 4 HOH 193 493 150 HOH HOH A . F 4 HOH 194 494 210 HOH HOH A . F 4 HOH 195 495 228 HOH HOH A . F 4 HOH 196 496 112 HOH HOH A . F 4 HOH 197 497 165 HOH HOH A . F 4 HOH 198 498 186 HOH HOH A . F 4 HOH 199 499 234 HOH HOH A . F 4 HOH 200 500 151 HOH HOH A . F 4 HOH 201 501 53 HOH HOH A . F 4 HOH 202 502 187 HOH HOH A . F 4 HOH 203 503 205 HOH HOH A . F 4 HOH 204 504 257 HOH HOH A . F 4 HOH 205 505 120 HOH HOH A . F 4 HOH 206 506 217 HOH HOH A . F 4 HOH 207 507 65 HOH HOH A . F 4 HOH 208 508 20 HOH HOH A . F 4 HOH 209 509 180 HOH HOH A . F 4 HOH 210 510 115 HOH HOH A . F 4 HOH 211 511 146 HOH HOH A . F 4 HOH 212 512 162 HOH HOH A . F 4 HOH 213 513 87 HOH HOH A . F 4 HOH 214 514 172 HOH HOH A . F 4 HOH 215 515 184 HOH HOH A . F 4 HOH 216 516 34 HOH HOH A . F 4 HOH 217 517 160 HOH HOH A . F 4 HOH 218 518 106 HOH HOH A . F 4 HOH 219 519 108 HOH HOH A . F 4 HOH 220 520 232 HOH HOH A . F 4 HOH 221 521 59 HOH HOH A . F 4 HOH 222 522 154 HOH HOH A . F 4 HOH 223 523 243 HOH HOH A . F 4 HOH 224 524 75 HOH HOH A . F 4 HOH 225 525 221 HOH HOH A . F 4 HOH 226 526 211 HOH HOH A . F 4 HOH 227 527 91 HOH HOH A . F 4 HOH 228 528 125 HOH HOH A . F 4 HOH 229 529 134 HOH HOH A . F 4 HOH 230 530 237 HOH HOH A . F 4 HOH 231 531 181 HOH HOH A . F 4 HOH 232 532 195 HOH HOH A . F 4 HOH 233 533 94 HOH HOH A . F 4 HOH 234 534 255 HOH HOH A . F 4 HOH 235 535 166 HOH HOH A . F 4 HOH 236 536 135 HOH HOH A . F 4 HOH 237 537 169 HOH HOH A . F 4 HOH 238 538 198 HOH HOH A . F 4 HOH 239 539 121 HOH HOH A . F 4 HOH 240 540 48 HOH HOH A . F 4 HOH 241 541 127 HOH HOH A . F 4 HOH 242 542 136 HOH HOH A . F 4 HOH 243 543 105 HOH HOH A . F 4 HOH 244 544 116 HOH HOH A . F 4 HOH 245 545 107 HOH HOH A . F 4 HOH 246 546 203 HOH HOH A . F 4 HOH 247 547 170 HOH HOH A . F 4 HOH 248 548 90 HOH HOH A . F 4 HOH 249 549 113 HOH HOH A . F 4 HOH 250 550 199 HOH HOH A . F 4 HOH 251 551 185 HOH HOH A . F 4 HOH 252 552 242 HOH HOH A . F 4 HOH 253 553 163 HOH HOH A . F 4 HOH 254 554 129 HOH HOH A . F 4 HOH 255 555 202 HOH HOH A . F 4 HOH 256 556 149 HOH HOH A . F 4 HOH 257 557 246 HOH HOH A . F 4 HOH 258 558 214 HOH HOH A . F 4 HOH 259 559 128 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 520 ? 1 MORE 6 ? 1 'SSA (A^2)' 7930 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-08-31 2 'Structure model' 1 1 2016-09-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 25.5163 _pdbx_refine_tls.origin_y 40.7491 _pdbx_refine_tls.origin_z 8.5402 _pdbx_refine_tls.T[1][1] 0.0124 _pdbx_refine_tls.T[2][2] 0.0028 _pdbx_refine_tls.T[3][3] 0.0204 _pdbx_refine_tls.T[1][2] 0.0042 _pdbx_refine_tls.T[1][3] 0.0049 _pdbx_refine_tls.T[2][3] -0.0011 _pdbx_refine_tls.L[1][1] 0.0524 _pdbx_refine_tls.L[2][2] 0.3075 _pdbx_refine_tls.L[3][3] 0.3855 _pdbx_refine_tls.L[1][2] 0.0875 _pdbx_refine_tls.L[1][3] -0.0908 _pdbx_refine_tls.L[2][3] -0.0729 _pdbx_refine_tls.S[1][1] -0.0021 _pdbx_refine_tls.S[1][2] -0.0022 _pdbx_refine_tls.S[1][3] 0.0147 _pdbx_refine_tls.S[2][1] 0.0070 _pdbx_refine_tls.S[2][2] -0.0010 _pdbx_refine_tls.S[2][3] -0.0060 _pdbx_refine_tls.S[3][1] 0.0336 _pdbx_refine_tls.S[3][2] -0.0003 _pdbx_refine_tls.S[3][3] 0.0032 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 42 _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 168 _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0073 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 52 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -159.86 _pdbx_validate_torsion.psi 89.74 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 558 ? 5.88 . 2 1 O ? A HOH 559 ? 6.15 . # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 ;5-(5-aminopyridin-3-yl)-8-(((3R,4R)-3-((1,1-dioxidotetrahydro-2H-thiopyran-4-yl)methoxy)piperidin-4-yl)amino)-3-methyl-1,7-naphthyridin-2(1H)-one ; 6XW 4 water HOH #