HEADER FLUORESCENT PROTEIN 20-JUL-16 5LK4 TITLE STRUCTURE OF THE RED FLUORESCENT PROTEIN MSCARLET AT PH 7.8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MSCARLET; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RED FLUORESCENT PROTEIN MSCARLET; COMPND 5 SYNONYM: DSRED; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DISCOSOMA SP.; SOURCE 3 ORGANISM_TAXID: 86600; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS BETA BARREL, RED FLUORESCENT PROTEIN, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.AUMONIER,G.GOTTHARD,A.ROYANT REVDAT 4 31-JAN-24 5LK4 1 REMARK REVDAT 3 14-SEP-22 5LK4 1 COMPND DBREF SEQADV HET REVDAT 3 2 1 HETNAM HETSYN FORMUL REVDAT 2 11-JAN-17 5LK4 1 JRNL REVDAT 1 07-DEC-16 5LK4 0 JRNL AUTH D.S.BINDELS,L.HAARBOSCH,L.VAN WEEREN,M.POSTMA,K.E.WIESE, JRNL AUTH 2 M.MASTOP,S.AUMONIER,G.GOTTHARD,A.ROYANT,M.A.HINK,T.W.GADELLA JRNL TITL MSCARLET: A BRIGHT MONOMERIC RED FLUORESCENT PROTEIN FOR JRNL TITL 2 CELLULAR IMAGING. JRNL REF NAT. METHODS V. 14 53 2017 JRNL REFN ESSN 1548-7105 JRNL PMID 27869816 JRNL DOI 10.1038/NMETH.4074 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 38751 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.138 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2835 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 142 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1739 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 65 REMARK 3 SOLVENT ATOMS : 196 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.42000 REMARK 3 B22 (A**2) : 0.22000 REMARK 3 B33 (A**2) : 0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.068 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.059 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.397 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.967 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1993 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1916 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2690 ; 1.643 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4465 ; 0.897 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 259 ; 6.492 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;34.097 ;23.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 357 ;11.547 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.285 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 273 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2199 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 449 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 913 ; 1.033 ; 1.299 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 912 ; 1.020 ; 1.295 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1150 ; 1.188 ; 1.949 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3908 ; 1.481 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 73 ;27.139 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3970 ; 5.333 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFMAC 5.8 REMARK 4 REMARK 4 5LK4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000855. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 - 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : SI [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40759 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 81.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.9900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDBID 3KCS REMARK 200 REMARK 200 REMARK: MSCARLET CRYSTAL WAS SOAKED 45 MIN IN 40% PEG 300, 100MM REMARK 200 SODIUM PHOSPHATE CITRATE PH 7.8 REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35-45% PEG 300, 100MM SODIUM PHOSPHATE REMARK 280 CITRATE, PH 4.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.10000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.82000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.10000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.82000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 461 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 592 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CE NZ REMARK 470 LYS A 46 CE NZ REMARK 470 LYS A 48 CD CE NZ REMARK 470 LYS A 179 CE NZ REMARK 470 GLU A 207 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 198 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 198 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 56 38.54 -87.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 596 DISTANCE = 6.73 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 307 DBREF 5LK4 A 8 222 UNP Q9U6Y8 RFP_DISSP 7 221 SEQADV 5LK4 ALA A 7 UNP Q9U6Y8 EXPRESSION TAG SEQADV 5LK4 HIS A 18 UNP Q9U6Y8 ARG 17 ENGINEERED MUTATION SEQADV 5LK4 SER A 22 UNP Q9U6Y8 THR 21 ENGINEERED MUTATION SEQADV 5LK4 MET A 23 UNP Q9U6Y8 VAL 22 ENGINEERED MUTATION SEQADV 5LK4 THR A 42 UNP Q9U6Y8 HIS 41 ENGINEERED MUTATION SEQADV 5LK4 GLN A 43 UNP Q9U6Y8 ASN 42 ENGINEERED MUTATION SEQADV 5LK4 ALA A 45 UNP Q9U6Y8 VAL 44 ENGINEERED MUTATION SEQADV 5LK4 SER A 58 UNP Q9U6Y8 ALA 57 ENGINEERED MUTATION SEQADV 5LK4 NRQ A 67 UNP Q9U6Y8 GLN 66 CHROMOPHORE SEQADV 5LK4 A UNP Q9U6Y8 TYR 67 CHROMOPHORE SEQADV 5LK4 A UNP Q9U6Y8 GLY 68 CHROMOPHORE SEQADV 5LK4 ARG A 71 UNP Q9U6Y8 LYS 70 ENGINEERED MUTATION SEQADV 5LK4 ALA A 72 UNP Q9U6Y8 VAL 71 ENGINEERED MUTATION SEQADV 5LK4 PHE A 73 UNP Q9U6Y8 TYR 72 ENGINEERED MUTATION SEQADV 5LK4 THR A 74 UNP Q9U6Y8 VAL 73 ENGINEERED MUTATION SEQADV 5LK4 TYR A 84 UNP Q9U6Y8 LYS 83 ENGINEERED MUTATION SEQADV 5LK4 GLN A 86 UNP Q9U6Y8 LEU 85 ENGINEERED MUTATION SEQADV 5LK4 ALA A 105 UNP Q9U6Y8 VAL 104 ENGINEERED MUTATION SEQADV 5LK4 THR A 112 UNP Q9U6Y8 SER 111 ENGINEERED MUTATION SEQADV 5LK4 GLU A 115 UNP Q9U6Y8 GLN 114 ENGINEERED MUTATION SEQADV 5LK4 THR A 118 UNP Q9U6Y8 CYS 117 ENGINEERED MUTATION SEQADV 5LK4 LEU A 119 UNP Q9U6Y8 PHE 118 ENGINEERED MUTATION SEQADV 5LK4 LEU A 125 UNP Q9U6Y8 PHE 124 ENGINEERED MUTATION SEQADV 5LK4 ARG A 126 UNP Q9U6Y8 ILE 125 ENGINEERED MUTATION SEQADV 5LK4 THR A 128 UNP Q9U6Y8 VAL 127 ENGINEERED MUTATION SEQADV 5LK4 PRO A 132 UNP Q9U6Y8 SER 131 ENGINEERED MUTATION SEQADV 5LK4 GLU A 154 UNP Q9U6Y8 ARG 153 ENGINEERED MUTATION SEQADV 5LK4 ASP A 161 UNP Q9U6Y8 GLU 160 ENGINEERED MUTATION SEQADV 5LK4 LYS A 163 UNP Q9U6Y8 HIS 162 ENGINEERED MUTATION SEQADV 5LK4 MET A 164 UNP Q9U6Y8 LYS 163 ENGINEERED MUTATION SEQADV 5LK4 ARG A 167 UNP Q9U6Y8 LYS 166 ENGINEERED MUTATION SEQADV 5LK4 ARG A 173 UNP Q9U6Y8 HIS 172 ENGINEERED MUTATION SEQADV 5LK4 ALA A 176 UNP Q9U6Y8 VAL 175 ENGINEERED MUTATION SEQADV 5LK4 ASP A 177 UNP Q9U6Y8 GLU 176 ENGINEERED MUTATION SEQADV 5LK4 THR A 180 UNP Q9U6Y8 SER 179 ENGINEERED MUTATION SEQADV 5LK4 THR A 181 UNP Q9U6Y8 ILE 180 ENGINEERED MUTATION SEQADV 5LK4 LYS A 183 UNP Q9U6Y8 MET 182 ENGINEERED MUTATION SEQADV 5LK4 MET A 190 UNP Q9U6Y8 LEU 189 ENGINEERED MUTATION SEQADV 5LK4 ALA A 193 UNP Q9U6Y8 TYR 192 ENGINEERED MUTATION SEQADV 5LK4 ASN A 195 UNP Q9U6Y8 TYR 194 ENGINEERED MUTATION SEQADV 5LK4 ARG A 198 UNP Q9U6Y8 SER 197 ENGINEERED MUTATION SEQADV 5LK4 VAL A 211 UNP Q9U6Y8 ILE 210 ENGINEERED MUTATION SEQADV 5LK4 SER A 218 UNP Q9U6Y8 THR 217 ENGINEERED MUTATION SEQADV 5LK4 SER A 223 UNP Q9U6Y8 EXPRESSION TAG SEQADV 5LK4 THR A 224 UNP Q9U6Y8 EXPRESSION TAG SEQADV 5LK4 GLY A 225 UNP Q9U6Y8 EXPRESSION TAG SEQRES 1 A 217 ALA VAL ILE LYS GLU PHE MET ARG PHE LYS VAL HIS MET SEQRES 2 A 217 GLU GLY SER MET ASN GLY HIS GLU PHE GLU ILE GLU GLY SEQRES 3 A 217 GLU GLY GLU GLY ARG PRO TYR GLU GLY THR GLN THR ALA SEQRES 4 A 217 LYS LEU LYS VAL THR LYS GLY GLY PRO LEU PRO PHE SER SEQRES 5 A 217 TRP ASP ILE LEU SER PRO GLN PHE NRQ SER ARG ALA PHE SEQRES 6 A 217 THR LYS HIS PRO ALA ASP ILE PRO ASP TYR TYR LYS GLN SEQRES 7 A 217 SER PHE PRO GLU GLY PHE LYS TRP GLU ARG VAL MET ASN SEQRES 8 A 217 PHE GLU ASP GLY GLY ALA VAL THR VAL THR GLN ASP THR SEQRES 9 A 217 SER LEU GLU ASP GLY THR LEU ILE TYR LYS VAL LYS LEU SEQRES 10 A 217 ARG GLY THR ASN PHE PRO PRO ASP GLY PRO VAL MET GLN SEQRES 11 A 217 LYS LYS THR MET GLY TRP GLU ALA SER THR GLU ARG LEU SEQRES 12 A 217 TYR PRO GLU ASP GLY VAL LEU LYS GLY ASP ILE LYS MET SEQRES 13 A 217 ALA LEU ARG LEU LYS ASP GLY GLY ARG TYR LEU ALA ASP SEQRES 14 A 217 PHE LYS THR THR TYR LYS ALA LYS LYS PRO VAL GLN MET SEQRES 15 A 217 PRO GLY ALA TYR ASN VAL ASP ARG LYS LEU ASP ILE THR SEQRES 16 A 217 SER HIS ASN GLU ASP TYR THR VAL VAL GLU GLN TYR GLU SEQRES 17 A 217 ARG SER GLU GLY ARG HIS SER THR GLY HET NRQ A 67 23 HET PG4 A 301 13 HET PO4 A 302 5 HET PGE A 303 10 HET PGE A 304 10 HET PGE A 305 10 HET PGE A 306 10 HET PEG A 307 7 HETNAM NRQ {(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO) HETNAM 2 NRQ PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 NRQ YL}ACETIC ACID HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM PO4 PHOSPHATE ION HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN NRQ CHROMOPHORE (MET-TYR-GLY) FORMUL 1 NRQ C16 H17 N3 O4 S FORMUL 2 PG4 C8 H18 O5 FORMUL 3 PO4 O4 P 3- FORMUL 4 PGE 4(C6 H14 O4) FORMUL 8 PEG C4 H10 O3 FORMUL 9 HOH *196(H2 O) HELIX 1 AA1 SER A 58 PHE A 66 5 9 HELIX 2 AA2 SER A 70 THR A 74 5 5 HELIX 3 AA3 ASP A 82 SER A 87 1 6 SHEET 1 AA113 THR A 141 TRP A 144 0 SHEET 2 AA113 VAL A 157 LEU A 168 -1 O ARG A 167 N GLY A 143 SHEET 3 AA113 ARG A 173 ALA A 184 -1 O TYR A 182 N LEU A 158 SHEET 4 AA113 PHE A 92 PHE A 100 -1 N LYS A 93 O LYS A 183 SHEET 5 AA113 ALA A 105 GLU A 115 -1 O VAL A 108 N ARG A 96 SHEET 6 AA113 THR A 118 THR A 128 -1 O ILE A 120 N SER A 113 SHEET 7 AA113 MET A 13 MET A 23 1 N SER A 22 O GLY A 127 SHEET 8 AA113 HIS A 26 ARG A 37 -1 O ILE A 30 N MET A 19 SHEET 9 AA113 THR A 42 LYS A 51 -1 O LYS A 46 N GLU A 33 SHEET 10 AA113 VAL A 211 ARG A 221 -1 O VAL A 212 N LEU A 47 SHEET 11 AA113 TYR A 194 HIS A 205 -1 N SER A 204 O GLU A 213 SHEET 12 AA113 SER A 147 GLU A 154 -1 N LEU A 151 O TYR A 194 SHEET 13 AA113 VAL A 157 LEU A 168 -1 O LYS A 159 N TYR A 152 LINK C PHE A 66 N1 NRQ A 67 1555 1555 1.30 LINK C3 NRQ A 67 N SER A 70 1555 1555 1.34 CISPEP 1 GLY A 53 PRO A 54 0 -9.02 CISPEP 2 PHE A 88 PRO A 89 0 11.06 SITE 1 AC1 6 PRO A 56 MET A 137 GLN A 138 LYS A 139 SITE 2 AC1 6 SER A 223 HOH A 460 SITE 1 AC2 6 ARG A 150 ASN A 195 ARG A 221 SER A 223 SITE 2 AC2 6 THR A 224 GLY A 225 SITE 1 AC3 7 GLY A 156 ALA A 184 LYS A 186 PRO A 187 SITE 2 AC3 7 VAL A 188 MET A 190 HOH A 424 SITE 1 AC4 11 PHE A 57 TRP A 59 ASP A 60 THR A 141 SITE 2 AC4 11 MET A 142 GLY A 143 ILE A 202 TYR A 209 SITE 3 AC4 11 HOH A 478 HOH A 520 HOH A 538 SITE 1 AC5 4 GLU A 95 LYS A 183 ASP A 201 TYR A 215 SITE 1 AC6 4 ALA A 146 SER A 147 THR A 148 ASP A 197 SITE 1 AC7 4 ASN A 99 PHE A 100 GLU A 101 LEU A 175 CRYST1 84.200 35.640 86.010 90.00 109.69 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011876 0.000000 0.004251 0.00000 SCALE2 0.000000 0.028058 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012349 0.00000