data_5LKN # _entry.id 5LKN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5LKN pdb_00005lkn 10.2210/pdb5lkn/pdb WWPDB D_1200000889 ? ? BMRB 34026 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 34026 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5LKN _pdbx_database_status.recvd_initial_deposition_date 2016-07-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Slapsak, U.' 1 'Salzano, G.' 2 'Amin, L.' 3 'Abskharon, R.N.N.' 4 'Ilc, G.' 5 'Zupancic, B.' 6 'Biljan, I.' 7 'Plavec, J.' 8 'Giachin, G.' 9 'Legname, G.' 10 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Biol.Chem. _citation.journal_id_ASTM JBCHA3 _citation.journal_id_CSD 0071 _citation.journal_id_ISSN 1083-351X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 291 _citation.language ? _citation.page_first 21857 _citation.page_last 21868 _citation.title ;The N Terminus of the Prion Protein Mediates Functional Interactions with the Neuronal Cell Adhesion Molecule (NCAM) Fibronectin Domain. ; _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1074/jbc.M116.743435 _citation.pdbx_database_id_PubMed 27535221 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Slapsak, U.' 1 ? primary 'Salzano, G.' 2 ? primary 'Amin, L.' 3 ? primary 'Abskharon, R.N.' 4 ? primary 'Ilc, G.' 5 ? primary 'Zupancic, B.' 6 ? primary 'Biljan, I.' 7 ? primary 'Plavec, J.' 8 ? primary 'Giachin, G.' 9 ? primary 'Legname, G.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Neural cell adhesion molecule 1' _entity.formula_weight 11858.316 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ;Details about the sequence Residue at position 595 is methionine and was added for the beginning of translation Residues 692-697 on C-terminal represents six histidine residues which were used as His-tag for protein purification ; # _entity_name_com.entity_id 1 _entity_name_com.name NCAM-1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVV AENQQGKSKAAHFVFRTHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVV AENQQGKSKAAHFVFRTHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLN n 1 3 PRO n 1 4 VAL n 1 5 ARG n 1 6 GLU n 1 7 PRO n 1 8 SER n 1 9 ALA n 1 10 PRO n 1 11 LYS n 1 12 LEU n 1 13 GLU n 1 14 GLY n 1 15 GLN n 1 16 MET n 1 17 GLY n 1 18 GLU n 1 19 ASP n 1 20 GLY n 1 21 ASN n 1 22 SER n 1 23 ILE n 1 24 LYS n 1 25 VAL n 1 26 ASN n 1 27 LEU n 1 28 ILE n 1 29 LYS n 1 30 GLN n 1 31 ASP n 1 32 ASP n 1 33 GLY n 1 34 GLY n 1 35 SER n 1 36 PRO n 1 37 ILE n 1 38 ARG n 1 39 HIS n 1 40 TYR n 1 41 LEU n 1 42 VAL n 1 43 ARG n 1 44 TYR n 1 45 ARG n 1 46 ALA n 1 47 LEU n 1 48 SER n 1 49 SER n 1 50 GLU n 1 51 TRP n 1 52 LYS n 1 53 PRO n 1 54 GLU n 1 55 ILE n 1 56 ARG n 1 57 LEU n 1 58 PRO n 1 59 SER n 1 60 GLY n 1 61 SER n 1 62 ASP n 1 63 HIS n 1 64 VAL n 1 65 MET n 1 66 LEU n 1 67 LYS n 1 68 SER n 1 69 LEU n 1 70 ASP n 1 71 TRP n 1 72 ASN n 1 73 ALA n 1 74 GLU n 1 75 TYR n 1 76 GLU n 1 77 VAL n 1 78 TYR n 1 79 VAL n 1 80 VAL n 1 81 ALA n 1 82 GLU n 1 83 ASN n 1 84 GLN n 1 85 GLN n 1 86 GLY n 1 87 LYS n 1 88 SER n 1 89 LYS n 1 90 ALA n 1 91 ALA n 1 92 HIS n 1 93 PHE n 1 94 VAL n 1 95 PHE n 1 96 ARG n 1 97 THR n 1 98 HIS n 1 99 HIS n 1 100 HIS n 1 101 HIS n 1 102 HIS n 1 103 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 103 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'NCAM1, NCAM' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plazmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET11a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NCAM1_HUMAN _struct_ref.pdbx_db_accession P13591 _struct_ref.pdbx_db_isoform P13591-1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;EPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQ GKSKAAHFVFRT ; _struct_ref.pdbx_align_begin 601 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5LKN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 6 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 97 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P13591 _struct_ref_seq.db_align_beg 601 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 692 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 600 _struct_ref_seq.pdbx_auth_seq_align_end 691 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5LKN MET A 1 ? UNP P13591 ? ? 'expression tag' 595 1 1 5LKN GLN A 2 ? UNP P13591 ? ? 'expression tag' 596 2 1 5LKN PRO A 3 ? UNP P13591 ? ? 'expression tag' 597 3 1 5LKN VAL A 4 ? UNP P13591 ? ? 'expression tag' 598 4 1 5LKN ARG A 5 ? UNP P13591 ? ? 'expression tag' 599 5 1 5LKN HIS A 98 ? UNP P13591 ? ? 'expression tag' 692 6 1 5LKN HIS A 99 ? UNP P13591 ? ? 'expression tag' 693 7 1 5LKN HIS A 100 ? UNP P13591 ? ? 'expression tag' 694 8 1 5LKN HIS A 101 ? UNP P13591 ? ? 'expression tag' 695 9 1 5LKN HIS A 102 ? UNP P13591 ? ? 'expression tag' 696 10 1 5LKN HIS A 103 ? UNP P13591 ? ? 'expression tag' 697 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-15N HSQC' 1 isotropic 2 1 1 '2D 1H-13C HSQC aliphatic' 1 isotropic 3 1 1 '2D 1H-13C HSQC aromatic' 1 isotropic 4 1 1 '3D HNCO' 1 isotropic 5 1 1 '3D HN(CO)CA' 1 isotropic 12 1 1 '3D HNCA' 1 isotropic 11 1 1 '3D CBCA(CO)NH' 1 isotropic 10 1 1 '3D HNCACB' 1 isotropic 9 1 1 '3D HBHA(CO)NH' 1 isotropic 8 1 1 '3D CC(CO)NH' 1 isotropic 7 1 1 '3D HCCH-TOCSY' 1 isotropic 6 1 1 '3D 1H-15N NOESY' 1 isotropic 14 1 1 '3D 1H-13C NOESY aliphatic' 1 isotropic 13 1 1 '3D 1H-13C NOESY aromatic' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 7.45 _pdbx_nmr_exptl_sample_conditions.ionic_strength 150 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label '13C and 15N labelled' _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;0.9 mM [U-99% 13C; U-99% 15N] "fibronectin type III domain 2, 20 mM TBS, 150 mM sodium chloride, 10 % [U-2H] D2O, 90 % H2O, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label '13C and 15N labelled' _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model VNMRS _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 5LKN _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'water refinement' _pdbx_nmr_refine.software_ordinal 4 # _pdbx_nmr_ensemble.entry_id 5LKN _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5LKN _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 5 collection VNMR ? Varian 6 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 1 'chemical shift assignment' CARA v1.8.42 'Keller and Wuthrich' 2 'peak picking' Sparky ? Goddard 7 'data analysis' TALOS ? 'Cornilescu, Delaglio and Bax' 3 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 4 refinement YASARA ? 'Elmar Krieger and Gert Vriend' 8 'data analysis' CING ? 'Doreleijers JF' 10 'data analysis' PSVS ? 'Bhattacharya and Montelione' 9 'data analysis' 'PROCHECK / PROCHECK-NMR' ? 'Laskowski, MacArthur, Smith, Jones, Hutchinson, Morris, Moss and Thornton' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LKN _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5LKN _struct.title 'NMR solution structure of human FNIII domain 2 of NCAM' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LKN _struct_keywords.text 'fibronectin type III domain, protein interactions, cell adhesion' _struct_keywords.pdbx_keywords 'CELL ADHESION' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER A 22 ? ASN A 26 ? SER A 616 ASN A 620 AA1 2 HIS A 63 ? LYS A 67 ? HIS A 657 LYS A 661 AA2 1 LYS A 52 ? PRO A 58 ? LYS A 646 PRO A 652 AA2 2 ILE A 37 ? ALA A 46 ? ILE A 631 ALA A 640 AA2 3 TYR A 75 ? ASN A 83 ? TYR A 669 ASN A 677 AA2 4 ALA A 91 ? PHE A 95 ? ALA A 685 PHE A 689 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 25 ? N VAL A 619 O VAL A 64 ? O VAL A 658 AA2 1 2 O LYS A 52 ? O LYS A 646 N TYR A 44 ? N TYR A 638 AA2 2 3 N ARG A 43 ? N ARG A 637 O TYR A 78 ? O TYR A 672 AA2 3 4 N VAL A 77 ? N VAL A 671 O PHE A 93 ? O PHE A 687 # _atom_sites.entry_id 5LKN _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 595 595 MET MET A . n A 1 2 GLN 2 596 596 GLN GLN A . n A 1 3 PRO 3 597 597 PRO PRO A . n A 1 4 VAL 4 598 598 VAL VAL A . n A 1 5 ARG 5 599 599 ARG ARG A . n A 1 6 GLU 6 600 600 GLU GLU A . n A 1 7 PRO 7 601 601 PRO PRO A . n A 1 8 SER 8 602 602 SER SER A . n A 1 9 ALA 9 603 603 ALA ALA A . n A 1 10 PRO 10 604 604 PRO PRO A . n A 1 11 LYS 11 605 605 LYS LYS A . n A 1 12 LEU 12 606 606 LEU LEU A . n A 1 13 GLU 13 607 607 GLU GLU A . n A 1 14 GLY 14 608 608 GLY GLY A . n A 1 15 GLN 15 609 609 GLN GLN A . n A 1 16 MET 16 610 610 MET MET A . n A 1 17 GLY 17 611 611 GLY GLY A . n A 1 18 GLU 18 612 612 GLU GLU A . n A 1 19 ASP 19 613 613 ASP ASP A . n A 1 20 GLY 20 614 614 GLY GLY A . n A 1 21 ASN 21 615 615 ASN ASN A . n A 1 22 SER 22 616 616 SER SER A . n A 1 23 ILE 23 617 617 ILE ILE A . n A 1 24 LYS 24 618 618 LYS LYS A . n A 1 25 VAL 25 619 619 VAL VAL A . n A 1 26 ASN 26 620 620 ASN ASN A . n A 1 27 LEU 27 621 621 LEU LEU A . n A 1 28 ILE 28 622 622 ILE ILE A . n A 1 29 LYS 29 623 623 LYS LYS A . n A 1 30 GLN 30 624 624 GLN GLN A . n A 1 31 ASP 31 625 625 ASP ASP A . n A 1 32 ASP 32 626 626 ASP ASP A . n A 1 33 GLY 33 627 627 GLY GLY A . n A 1 34 GLY 34 628 628 GLY GLY A . n A 1 35 SER 35 629 629 SER SER A . n A 1 36 PRO 36 630 630 PRO PRO A . n A 1 37 ILE 37 631 631 ILE ILE A . n A 1 38 ARG 38 632 632 ARG ARG A . n A 1 39 HIS 39 633 633 HIS HIS A . n A 1 40 TYR 40 634 634 TYR TYR A . n A 1 41 LEU 41 635 635 LEU LEU A . n A 1 42 VAL 42 636 636 VAL VAL A . n A 1 43 ARG 43 637 637 ARG ARG A . n A 1 44 TYR 44 638 638 TYR TYR A . n A 1 45 ARG 45 639 639 ARG ARG A . n A 1 46 ALA 46 640 640 ALA ALA A . n A 1 47 LEU 47 641 641 LEU LEU A . n A 1 48 SER 48 642 642 SER SER A . n A 1 49 SER 49 643 643 SER SER A . n A 1 50 GLU 50 644 644 GLU GLU A . n A 1 51 TRP 51 645 645 TRP TRP A . n A 1 52 LYS 52 646 646 LYS LYS A . n A 1 53 PRO 53 647 647 PRO PRO A . n A 1 54 GLU 54 648 648 GLU GLU A . n A 1 55 ILE 55 649 649 ILE ILE A . n A 1 56 ARG 56 650 650 ARG ARG A . n A 1 57 LEU 57 651 651 LEU LEU A . n A 1 58 PRO 58 652 652 PRO PRO A . n A 1 59 SER 59 653 653 SER SER A . n A 1 60 GLY 60 654 654 GLY GLY A . n A 1 61 SER 61 655 655 SER SER A . n A 1 62 ASP 62 656 656 ASP ASP A . n A 1 63 HIS 63 657 657 HIS HIS A . n A 1 64 VAL 64 658 658 VAL VAL A . n A 1 65 MET 65 659 659 MET MET A . n A 1 66 LEU 66 660 660 LEU LEU A . n A 1 67 LYS 67 661 661 LYS LYS A . n A 1 68 SER 68 662 662 SER SER A . n A 1 69 LEU 69 663 663 LEU LEU A . n A 1 70 ASP 70 664 664 ASP ASP A . n A 1 71 TRP 71 665 665 TRP TRP A . n A 1 72 ASN 72 666 666 ASN ASN A . n A 1 73 ALA 73 667 667 ALA ALA A . n A 1 74 GLU 74 668 668 GLU GLU A . n A 1 75 TYR 75 669 669 TYR TYR A . n A 1 76 GLU 76 670 670 GLU GLU A . n A 1 77 VAL 77 671 671 VAL VAL A . n A 1 78 TYR 78 672 672 TYR TYR A . n A 1 79 VAL 79 673 673 VAL VAL A . n A 1 80 VAL 80 674 674 VAL VAL A . n A 1 81 ALA 81 675 675 ALA ALA A . n A 1 82 GLU 82 676 676 GLU GLU A . n A 1 83 ASN 83 677 677 ASN ASN A . n A 1 84 GLN 84 678 678 GLN GLN A . n A 1 85 GLN 85 679 679 GLN GLN A . n A 1 86 GLY 86 680 680 GLY GLY A . n A 1 87 LYS 87 681 681 LYS LYS A . n A 1 88 SER 88 682 682 SER SER A . n A 1 89 LYS 89 683 683 LYS LYS A . n A 1 90 ALA 90 684 684 ALA ALA A . n A 1 91 ALA 91 685 685 ALA ALA A . n A 1 92 HIS 92 686 686 HIS HIS A . n A 1 93 PHE 93 687 687 PHE PHE A . n A 1 94 VAL 94 688 688 VAL VAL A . n A 1 95 PHE 95 689 689 PHE PHE A . n A 1 96 ARG 96 690 690 ARG ARG A . n A 1 97 THR 97 691 691 THR THR A . n A 1 98 HIS 98 692 692 HIS HIS A . n A 1 99 HIS 99 693 693 HIS HIS A . n A 1 100 HIS 100 694 694 HIS HIS A . n A 1 101 HIS 101 695 695 HIS HIS A . n A 1 102 HIS 102 696 696 HIS HIS A . n A 1 103 HIS 103 697 697 HIS HIS A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 6670 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-09-14 2 'Structure model' 1 1 2016-09-21 3 'Structure model' 1 2 2016-10-26 4 'Structure model' 1 3 2019-05-08 5 'Structure model' 1 4 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Database references' 5 5 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_nmr_software 2 5 'Structure model' database_2 3 5 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_nmr_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 ;"fibronectin type III domain 2 ; 0.9 ? mM '[U-99% 13C; U-99% 15N]' 1 TBS 20 ? mM 'natural abundance' 1 'sodium chloride' 150 ? mM 'natural abundance' 1 D2O 10 ? % '[U-2H]' 1 H2O 90 ? % 'natural abundance' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 8 NE A ARG 690 ? ? CZ A ARG 690 ? ? NH1 A ARG 690 ? ? 123.49 120.30 3.19 0.50 N 2 17 NE A ARG 637 ? ? CZ A ARG 637 ? ? NH1 A ARG 637 ? ? 123.36 120.30 3.06 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 3 GLN A 678 ? ? -66.50 1.98 2 4 GLN A 678 ? ? -67.36 1.72 3 4 HIS A 694 ? ? -76.57 35.27 4 5 HIS A 692 ? ? 65.81 -16.58 5 6 GLN A 596 ? ? -138.08 -63.70 6 7 SER A 653 ? ? -73.52 22.73 7 7 GLN A 678 ? ? -66.12 2.05 8 8 ASN A 615 ? ? 55.73 17.69 9 11 GLN A 678 ? ? -69.32 2.30 10 13 ASN A 615 ? ? 53.36 18.79 11 13 TRP A 645 ? ? -64.58 99.83 12 13 GLN A 678 ? ? -65.10 1.92 13 13 HIS A 692 ? ? 56.41 18.64 14 14 PRO A 647 ? ? -65.79 -70.11 15 14 HIS A 696 ? ? -117.37 69.31 16 15 GLN A 678 ? ? -65.65 2.19 17 17 PRO A 647 ? ? -60.87 -73.81 18 17 GLN A 678 ? ? -67.57 1.97 19 18 TRP A 645 ? ? -69.25 96.99 20 18 SER A 653 ? ? -65.70 7.32 21 20 HIS A 692 ? ? 63.73 -9.06 # _pdbx_audit_support.funding_organization 'Slovenian Research Agency' _pdbx_audit_support.country Slovenia _pdbx_audit_support.grant_number P1-242 _pdbx_audit_support.ordinal 1 #