HEADER TRANSPORT PROTEIN 28-JUL-16 5LLV TITLE CRYSTAL STRUCTURE OF DACM F87M/L110M TRANSTHYRETIN MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: ATTR,PREALBUMIN,TBPA; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTR, PALB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TETRAMER, PROTEIN AGGREGATION, N-(7-DIMETHYLAMINO-4-METHYLCOUMARIN-3- KEYWDS 2 YL))MALEIMIDE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.M.SALA,S.A.GHADAMI,F.BEMPORAD,F.CHITI,S.RICAGNO REVDAT 4 10-JAN-24 5LLV 1 REMARK REVDAT 3 13-DEC-17 5LLV 1 JRNL REVDAT 2 26-JUL-17 5LLV 1 REVDAT 1 07-JUN-17 5LLV 0 JRNL AUTH S.A.GHADAMI,F.BEMPORAD,B.M.SALA,G.TIANA,S.RICAGNO,F.CHITI JRNL TITL FRET STUDIES OF VARIOUS CONFORMATIONAL STATES ADOPTED BY JRNL TITL 2 TRANSTHYRETIN. JRNL REF CELL. MOL. LIFE SCI. V. 74 3577 2017 JRNL REFN ESSN 1420-9071 JRNL PMID 28478513 JRNL DOI 10.1007/S00018-017-2533-X REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 49331 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2619 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3614 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 185 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3572 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 182 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : 0.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.091 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.697 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3824 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3548 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5248 ; 1.679 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8247 ; 0.805 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 598 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4328 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 832 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1908 ; 4.363 ; 2.060 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1903 ; 4.324 ; 2.054 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2386 ; 5.186 ; 3.068 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2387 ; 5.186 ; 3.071 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1916 ; 6.619 ; 2.670 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1917 ; 6.618 ; 2.670 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2837 ; 7.643 ; 3.770 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3010 ; 8.115 ;23.531 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3011 ; 8.114 ;23.536 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7372 ; 4.125 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 73 ;33.845 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 7364 ;17.138 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LLV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000969. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8726 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : KB MIRRO REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52003 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 22.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.77200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1GKO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CACL2 0.1 M SODIUM ACETATE PH REMARK 280 4.6 20% V/V 2-PROPANOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.22050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.26500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.26500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.22050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 GLY A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 LYS A 9 REMARK 465 LYS A 126 REMARK 465 GLU A 127 REMARK 465 MET B 0 REMARK 465 GLY B 1 REMARK 465 PRO B 2 REMARK 465 THR B 3 REMARK 465 GLY B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 465 GLU B 7 REMARK 465 SER B 8 REMARK 465 LYS B 9 REMARK 465 LYS B 126 REMARK 465 GLU B 127 REMARK 465 MET C 0 REMARK 465 GLY C 1 REMARK 465 PRO C 2 REMARK 465 THR C 3 REMARK 465 GLY C 4 REMARK 465 THR C 5 REMARK 465 GLY C 6 REMARK 465 GLU C 7 REMARK 465 SER C 8 REMARK 465 LYS C 9 REMARK 465 LYS C 126 REMARK 465 GLU C 127 REMARK 465 MET D 0 REMARK 465 GLY D 1 REMARK 465 PRO D 2 REMARK 465 THR D 3 REMARK 465 GLY D 4 REMARK 465 THR D 5 REMARK 465 GLY D 6 REMARK 465 GLU D 7 REMARK 465 SER D 8 REMARK 465 LYS D 9 REMARK 465 LYS D 126 REMARK 465 GLU D 127 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 334 O HOH C 335 1.79 REMARK 500 CG MET C 110 O HOH B 341 2.02 REMARK 500 O HOH C 308 O HOH C 334 2.05 REMARK 500 O HOH B 302 O HOH B 338 2.19 REMARK 500 O HOH D 328 O HOH D 339 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 345 O HOH B 351 4475 1.45 REMARK 500 O HOH C 331 O HOH D 338 4565 1.62 REMARK 500 CG GLU A 63 O HOH B 308 4475 2.05 REMARK 500 O HOH B 344 O HOH C 318 3855 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER D 117 CA SER D 117 C 0.183 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 21 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 GLU C 92 CG - CD - OE2 ANGL. DEV. = -12.2 DEGREES REMARK 500 MET D 87 CG - SD - CE ANGL. DEV. = 12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 38 -33.22 -24.54 REMARK 500 SER B 100 63.90 -118.74 REMARK 500 ASP D 38 28.42 -75.86 REMARK 500 ASP D 39 36.07 27.56 REMARK 500 PHE D 44 -50.71 -130.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN B 124 PRO B 125 -31.02 REMARK 500 ASN C 124 PRO C 125 -137.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER D 117 15.67 REMARK 500 SER D 117 15.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 350 DISTANCE = 5.99 ANGSTROMS REMARK 525 HOH B 351 DISTANCE = 8.56 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT D 201 DBREF 5LLV A 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 5LLV B 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 5LLV C 1 127 UNP P02766 TTHY_HUMAN 21 147 DBREF 5LLV D 1 127 UNP P02766 TTHY_HUMAN 21 147 SEQADV 5LLV MET A 0 UNP P02766 INITIATING METHIONINE SEQADV 5LLV MET A 87 UNP P02766 PHE 107 ENGINEERED MUTATION SEQADV 5LLV MET A 110 UNP P02766 LEU 130 ENGINEERED MUTATION SEQADV 5LLV MET B 0 UNP P02766 INITIATING METHIONINE SEQADV 5LLV MET B 87 UNP P02766 PHE 107 ENGINEERED MUTATION SEQADV 5LLV MET B 110 UNP P02766 LEU 130 ENGINEERED MUTATION SEQADV 5LLV MET C 0 UNP P02766 INITIATING METHIONINE SEQADV 5LLV MET C 87 UNP P02766 PHE 107 ENGINEERED MUTATION SEQADV 5LLV MET C 110 UNP P02766 LEU 130 ENGINEERED MUTATION SEQADV 5LLV MET D 0 UNP P02766 INITIATING METHIONINE SEQADV 5LLV MET D 87 UNP P02766 PHE 107 ENGINEERED MUTATION SEQADV 5LLV MET D 110 UNP P02766 LEU 130 ENGINEERED MUTATION SEQRES 1 A 128 MET GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU SEQRES 2 A 128 MET VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA SEQRES 3 A 128 ILE ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP SEQRES 4 A 128 ASP THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SEQRES 5 A 128 SER GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE SEQRES 6 A 128 VAL GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER SEQRES 7 A 128 TYR TRP LYS ALA LEU GLY ILE SER PRO MET HIS GLU HIS SEQRES 8 A 128 ALA GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG SEQRES 9 A 128 ARG TYR THR ILE ALA ALA MET LEU SER PRO TYR SER TYR SEQRES 10 A 128 SER THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 B 128 MET GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU SEQRES 2 B 128 MET VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA SEQRES 3 B 128 ILE ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP SEQRES 4 B 128 ASP THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SEQRES 5 B 128 SER GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE SEQRES 6 B 128 VAL GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER SEQRES 7 B 128 TYR TRP LYS ALA LEU GLY ILE SER PRO MET HIS GLU HIS SEQRES 8 B 128 ALA GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG SEQRES 9 B 128 ARG TYR THR ILE ALA ALA MET LEU SER PRO TYR SER TYR SEQRES 10 B 128 SER THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 C 128 MET GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU SEQRES 2 C 128 MET VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA SEQRES 3 C 128 ILE ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP SEQRES 4 C 128 ASP THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SEQRES 5 C 128 SER GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE SEQRES 6 C 128 VAL GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER SEQRES 7 C 128 TYR TRP LYS ALA LEU GLY ILE SER PRO MET HIS GLU HIS SEQRES 8 C 128 ALA GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG SEQRES 9 C 128 ARG TYR THR ILE ALA ALA MET LEU SER PRO TYR SER TYR SEQRES 10 C 128 SER THR THR ALA VAL VAL THR ASN PRO LYS GLU SEQRES 1 D 128 MET GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU SEQRES 2 D 128 MET VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA SEQRES 3 D 128 ILE ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP SEQRES 4 D 128 ASP THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SEQRES 5 D 128 SER GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE SEQRES 6 D 128 VAL GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER SEQRES 7 D 128 TYR TRP LYS ALA LEU GLY ILE SER PRO MET HIS GLU HIS SEQRES 8 D 128 ALA GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG SEQRES 9 D 128 ARG TYR THR ILE ALA ALA MET LEU SER PRO TYR SER TYR SEQRES 10 D 128 SER THR THR ALA VAL VAL THR ASN PRO LYS GLU HET CL A 201 1 HET ACT A 202 4 HET ACT B 201 4 HET CL C 201 1 HET CL C 202 1 HET ACT C 203 4 HET ACT D 201 4 HETNAM CL CHLORIDE ION HETNAM ACT ACETATE ION FORMUL 5 CL 3(CL 1-) FORMUL 6 ACT 4(C2 H3 O2 1-) FORMUL 12 HOH *182(H2 O) HELIX 1 AA1 ASP A 74 LEU A 82 1 9 HELIX 2 AA2 ASP B 74 LEU B 82 1 9 HELIX 3 AA3 ASP C 74 LEU C 82 1 9 HELIX 4 AA4 ASP D 74 LEU D 82 1 9 SHEET 1 AA1 8 SER A 23 PRO A 24 0 SHEET 2 AA1 8 LEU A 12 ASP A 18 -1 N ASP A 18 O SER A 23 SHEET 3 AA1 8 ARG A 104 SER A 112 1 O LEU A 111 N LEU A 17 SHEET 4 AA1 8 SER A 115 THR A 123 -1 O SER A 117 N MET A 110 SHEET 5 AA1 8 SER B 115 THR B 123 -1 O TYR B 116 N THR A 118 SHEET 6 AA1 8 ARG B 104 SER B 112 -1 N ARG B 104 O THR B 123 SHEET 7 AA1 8 LEU B 12 ASP B 18 1 N LYS B 15 O ILE B 107 SHEET 8 AA1 8 SER B 23 PRO B 24 -1 O SER B 23 N ASP B 18 SHEET 1 AA2 8 GLU A 54 LEU A 55 0 SHEET 2 AA2 8 LEU A 12 ASP A 18 -1 N VAL A 14 O LEU A 55 SHEET 3 AA2 8 ARG A 104 SER A 112 1 O LEU A 111 N LEU A 17 SHEET 4 AA2 8 SER A 115 THR A 123 -1 O SER A 117 N MET A 110 SHEET 5 AA2 8 SER B 115 THR B 123 -1 O TYR B 116 N THR A 118 SHEET 6 AA2 8 ARG B 104 SER B 112 -1 N ARG B 104 O THR B 123 SHEET 7 AA2 8 LEU B 12 ASP B 18 1 N LYS B 15 O ILE B 107 SHEET 8 AA2 8 GLU B 54 LEU B 55 -1 O LEU B 55 N VAL B 14 SHEET 1 AA3 8 TRP A 41 LYS A 48 0 SHEET 2 AA3 8 ALA A 29 LYS A 35 -1 N VAL A 32 O ALA A 45 SHEET 3 AA3 8 GLY A 67 ILE A 73 -1 O GLU A 72 N HIS A 31 SHEET 4 AA3 8 HIS A 88 ALA A 97 -1 O PHE A 95 N TYR A 69 SHEET 5 AA3 8 ALA B 91 ALA B 97 -1 O VAL B 94 N GLU A 89 SHEET 6 AA3 8 GLY B 67 ILE B 73 -1 N ILE B 73 O ALA B 91 SHEET 7 AA3 8 ALA B 29 LYS B 35 -1 N HIS B 31 O GLU B 72 SHEET 8 AA3 8 TRP B 41 LYS B 48 -1 O ALA B 45 N VAL B 32 SHEET 1 AA4 8 SER C 23 PRO C 24 0 SHEET 2 AA4 8 LEU C 12 ASP C 18 -1 N ASP C 18 O SER C 23 SHEET 3 AA4 8 ARG C 104 SER C 112 1 O ALA C 109 N LYS C 15 SHEET 4 AA4 8 SER C 115 THR C 123 -1 O VAL C 121 N THR C 106 SHEET 5 AA4 8 SER D 115 THR D 123 -1 O TYR D 116 N THR C 118 SHEET 6 AA4 8 ARG D 104 SER D 112 -1 N ARG D 104 O THR D 123 SHEET 7 AA4 8 LEU D 12 ASP D 18 1 N LEU D 17 O LEU D 111 SHEET 8 AA4 8 SER D 23 PRO D 24 -1 O SER D 23 N ASP D 18 SHEET 1 AA5 8 GLU C 54 LEU C 55 0 SHEET 2 AA5 8 LEU C 12 ASP C 18 -1 N VAL C 14 O LEU C 55 SHEET 3 AA5 8 ARG C 104 SER C 112 1 O ALA C 109 N LYS C 15 SHEET 4 AA5 8 SER C 115 THR C 123 -1 O VAL C 121 N THR C 106 SHEET 5 AA5 8 SER D 115 THR D 123 -1 O TYR D 116 N THR C 118 SHEET 6 AA5 8 ARG D 104 SER D 112 -1 N ARG D 104 O THR D 123 SHEET 7 AA5 8 LEU D 12 ASP D 18 1 N LEU D 17 O LEU D 111 SHEET 8 AA5 8 GLU D 54 LEU D 55 -1 O LEU D 55 N VAL D 14 SHEET 1 AA6 4 TRP C 41 LYS C 48 0 SHEET 2 AA6 4 ALA C 29 LYS C 35 -1 N VAL C 32 O ALA C 45 SHEET 3 AA6 4 GLY C 67 ILE C 73 -1 O GLU C 72 N HIS C 31 SHEET 4 AA6 4 ALA C 91 ALA C 97 -1 O ALA C 91 N ILE C 73 SHEET 1 AA7 4 TRP D 41 LYS D 48 0 SHEET 2 AA7 4 ALA D 29 LYS D 35 -1 N VAL D 32 O ALA D 45 SHEET 3 AA7 4 GLY D 67 ILE D 73 -1 O GLU D 72 N HIS D 31 SHEET 4 AA7 4 ALA D 91 ALA D 97 -1 O PHE D 95 N TYR D 69 SITE 1 AC1 5 GLU A 92 VAL A 93 VAL A 94 HIS B 90 SITE 2 AC1 5 TYR B 116 SITE 1 AC2 7 MET A 110 SER A 112 SER A 115 TYR A 116 SITE 2 AC2 7 SER A 117 SER C 115 ACT C 203 SITE 1 AC3 4 MET B 110 SER B 115 SER D 117 ACT D 201 SITE 1 AC4 5 HIS C 90 TYR C 116 GLU D 92 VAL D 93 SITE 2 AC4 5 VAL D 94 SITE 1 AC5 5 MET B 110 ALA C 108 SER C 117 THR C 118 SITE 2 AC5 5 THR C 119 SITE 1 AC6 4 SER A 117 ACT A 202 MET C 110 SER C 115 SITE 1 AC7 6 MET B 110 ACT B 201 MET D 110 SER D 115 SITE 2 AC7 6 TYR D 116 SER D 117 CRYST1 64.441 83.760 86.530 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015518 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011939 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011557 0.00000