HEADER OXIDOREDUCTASE 29-JUL-16 5LMC TITLE OXIDIZED FLAVODIIRON CORE OF ESCHERICHIA COLI FLAVORUBREDOXIN, TITLE 2 INCLUDING THE FE-4SG ATOMS FROM ITS RUBREDOXIN DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANAEROBIC NITRIC OXIDE REDUCTASE FLAVORUBREDOXIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FLAVORB, FLAVODIIRON NITRIC OXIDE REDUCTASE; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: FLAVORUBREDOXIN WAS MODELED FROM RESIDUE 2 TO 400, COMPND 7 BECAUSE RESIDUES 401 TO 479 WERE NOT VISIBLE DUE TO DISORDER. COMPND 8 HOWEVER, THE HEAVIER ATOMS FROM THE MISSING C-TERMINAL RUBREDOXIN COMPND 9 DOMAIN, FE-4S, WERE DETECTED AND VALIDATED THROUGH ITS COMPND 10 STEREOCHEMISTRY. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: NORV, FLRD, YGAI, YGAJ, YGAK, B2710, JW2680; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLAVORUBREDOXIN, FLAVODIIRON PROTEIN, DIIRON CENTER, NITRIC OXIDE KEYWDS 2 REDUCTASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.V.ROMAO,P.T.BORGES,J.B.VICENTE,M.A.CARRONDO,M.TEIXEIRA,C.FRAZAO REVDAT 3 10-JAN-24 5LMC 1 REMARK REVDAT 2 30-NOV-16 5LMC 1 JRNL REVDAT 1 19-OCT-16 5LMC 0 JRNL AUTH C.V.ROMAO,J.B.VICENTE,P.T.BORGES,B.L.VICTOR,P.LAMOSA, JRNL AUTH 2 E.SILVA,L.PEREIRA,T.M.BANDEIRAS,C.M.SOARES,M.A.CARRONDO, JRNL AUTH 3 D.TURNER,M.TEIXEIRA,C.FRAZAO JRNL TITL STRUCTURE OF ESCHERICHIA COLI FLAVODIIRON NITRIC OXIDE JRNL TITL 2 REDUCTASE. JRNL REF J.MOL.BIOL. V. 428 4686 2016 JRNL REFN ESSN 1089-8638 JRNL PMID 27725182 JRNL DOI 10.1016/J.JMB.2016.10.008 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.1_357 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 49678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.166 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.320 REMARK 3 FREE R VALUE TEST SET COUNT : 1648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.0945 - 5.9045 0.99 1878 1878 0.1908 0.1908 REMARK 3 2 5.9045 - 4.6872 1.00 1755 1755 0.1484 0.1484 REMARK 3 3 4.6872 - 4.0949 1.00 1739 1739 0.1326 0.1326 REMARK 3 4 4.0949 - 3.7206 1.00 1703 1703 0.1276 0.1276 REMARK 3 5 3.7206 - 3.4539 1.00 1713 1713 0.1450 0.1450 REMARK 3 6 3.4539 - 3.2503 1.00 1690 1690 0.1551 0.1551 REMARK 3 7 3.2503 - 3.0875 1.00 1697 1697 0.1707 0.1707 REMARK 3 8 3.0875 - 2.9531 1.00 1686 1686 0.1705 0.1705 REMARK 3 9 2.9531 - 2.8394 1.00 1672 1672 0.1675 0.1675 REMARK 3 10 2.8394 - 2.7415 1.00 1677 1677 0.1690 0.1690 REMARK 3 11 2.7415 - 2.6557 1.00 1679 1679 0.1620 0.1620 REMARK 3 12 2.6557 - 2.5798 1.00 1658 1658 0.1580 0.1580 REMARK 3 13 2.5798 - 2.5119 1.00 1678 1678 0.1564 0.1564 REMARK 3 14 2.5119 - 2.4506 1.00 1661 1661 0.1566 0.1566 REMARK 3 15 2.4506 - 2.3949 1.00 1673 1673 0.1538 0.1538 REMARK 3 16 2.3949 - 2.3440 1.00 1662 1662 0.1494 0.1494 REMARK 3 17 2.3440 - 2.2971 1.00 1680 1680 0.1454 0.1454 REMARK 3 18 2.2971 - 2.2537 1.00 1645 1645 0.1584 0.1584 REMARK 3 19 2.2537 - 2.2135 1.00 1651 1651 0.1546 0.1546 REMARK 3 20 2.2135 - 2.1759 1.00 1661 1661 0.1620 0.1620 REMARK 3 21 2.1759 - 2.1408 1.00 1665 1665 0.1629 0.1629 REMARK 3 22 2.1408 - 2.1079 1.00 1663 1663 0.1746 0.1746 REMARK 3 23 2.1079 - 2.0769 1.00 1637 1637 0.1840 0.1840 REMARK 3 24 2.0769 - 2.0476 0.98 1622 1622 0.2103 0.2103 REMARK 3 25 2.0476 - 2.0200 0.97 1605 1605 0.2142 0.2142 REMARK 3 26 2.0200 - 1.9937 0.96 1580 1580 0.2340 0.2340 REMARK 3 27 1.9937 - 1.9688 0.94 1536 1536 0.2352 0.2352 REMARK 3 28 1.9688 - 1.9451 0.93 1529 1529 0.2534 0.2534 REMARK 3 29 1.9451 - 1.9225 0.92 1537 1537 0.2848 0.2848 REMARK 3 30 1.9225 - 1.9009 0.89 1446 1446 0.3176 0.3176 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 42.37 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.88410 REMARK 3 B22 (A**2) : -3.88410 REMARK 3 B33 (A**2) : 7.76820 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3363 REMARK 3 ANGLE : 1.068 4548 REMARK 3 CHIRALITY : 0.078 493 REMARK 3 PLANARITY : 0.004 585 REMARK 3 DIHEDRAL : 12.948 1212 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 2:51) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6263 50.8891 24.6808 REMARK 3 T TENSOR REMARK 3 T11: 0.1966 T22: 0.1981 REMARK 3 T33: 0.2138 T12: 0.0266 REMARK 3 T13: -0.0015 T23: -0.0464 REMARK 3 L TENSOR REMARK 3 L11: 0.8444 L22: 0.8859 REMARK 3 L33: 0.4729 L12: -0.0179 REMARK 3 L13: -0.3245 L23: -0.5530 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: 0.1074 S13: -0.0472 REMARK 3 S21: -0.0830 S22: -0.0461 S23: -0.0807 REMARK 3 S31: 0.1154 S32: -0.0631 S33: 0.0313 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 52:68) REMARK 3 ORIGIN FOR THE GROUP (A): 35.4201 54.5246 16.9509 REMARK 3 T TENSOR REMARK 3 T11: 0.2570 T22: 0.3309 REMARK 3 T33: 0.2938 T12: 0.0351 REMARK 3 T13: 0.0343 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.8402 L22: 1.6493 REMARK 3 L33: 1.5715 L12: -0.7536 REMARK 3 L13: -0.8428 L23: 0.2253 REMARK 3 S TENSOR REMARK 3 S11: 0.1715 S12: 0.2617 S13: 0.1618 REMARK 3 S21: -0.3399 S22: 0.0363 S23: -0.8614 REMARK 3 S31: -0.0329 S32: 0.2939 S33: -0.0060 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 69:164) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4553 57.6560 15.2580 REMARK 3 T TENSOR REMARK 3 T11: 0.2672 T22: 0.2459 REMARK 3 T33: 0.1878 T12: 0.0236 REMARK 3 T13: -0.0265 T23: -0.0382 REMARK 3 L TENSOR REMARK 3 L11: 0.7200 L22: 0.6920 REMARK 3 L33: 0.5063 L12: -0.0826 REMARK 3 L13: -0.1504 L23: -0.3066 REMARK 3 S TENSOR REMARK 3 S11: 0.0626 S12: 0.2064 S13: -0.0441 REMARK 3 S21: -0.2339 S22: -0.0791 S23: -0.0076 REMARK 3 S31: -0.0277 S32: -0.0536 S33: 0.0223 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 165:239) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1135 47.4951 32.4944 REMARK 3 T TENSOR REMARK 3 T11: 0.1456 T22: 0.1701 REMARK 3 T33: 0.2277 T12: -0.0049 REMARK 3 T13: -0.0030 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.4664 L22: 0.7308 REMARK 3 L33: 0.7666 L12: -0.3316 REMARK 3 L13: 0.1330 L23: 0.2993 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.0553 S13: -0.2209 REMARK 3 S21: 0.0367 S22: 0.0134 S23: 0.0247 REMARK 3 S31: 0.0740 S32: 0.0122 S33: 0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 240:253) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4197 50.1399 44.0168 REMARK 3 T TENSOR REMARK 3 T11: 0.1560 T22: 0.1828 REMARK 3 T33: 0.2647 T12: -0.0063 REMARK 3 T13: -0.0070 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.1740 L22: 0.4803 REMARK 3 L33: 0.1696 L12: 0.0832 REMARK 3 L13: -0.0265 L23: 0.2630 REMARK 3 S TENSOR REMARK 3 S11: -0.0510 S12: -0.1377 S13: -0.1145 REMARK 3 S21: 0.0834 S22: 0.0394 S23: 0.2239 REMARK 3 S31: 0.0758 S32: 0.0481 S33: 0.0053 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 254:295) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1776 60.6329 61.3002 REMARK 3 T TENSOR REMARK 3 T11: 0.1578 T22: 0.1918 REMARK 3 T33: 0.2033 T12: 0.0303 REMARK 3 T13: 0.0087 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.4067 L22: 0.0933 REMARK 3 L33: 0.3229 L12: 0.1889 REMARK 3 L13: 0.3751 L23: 0.1853 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: -0.1345 S13: -0.0318 REMARK 3 S21: 0.0581 S22: 0.0394 S23: -0.1105 REMARK 3 S31: -0.0435 S32: 0.1034 S33: -0.0114 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 296:327) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4485 67.0087 53.1592 REMARK 3 T TENSOR REMARK 3 T11: 0.1466 T22: 0.1573 REMARK 3 T33: 0.1570 T12: 0.0059 REMARK 3 T13: 0.0080 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.2537 L22: 0.1142 REMARK 3 L33: 0.0978 L12: -0.1292 REMARK 3 L13: -0.1738 L23: 0.0887 REMARK 3 S TENSOR REMARK 3 S11: 0.0103 S12: 0.0325 S13: -0.0414 REMARK 3 S21: -0.0997 S22: -0.0065 S23: -0.0713 REMARK 3 S31: -0.0473 S32: 0.0141 S33: 0.0094 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 328:339) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0189 64.5223 46.0245 REMARK 3 T TENSOR REMARK 3 T11: 0.1614 T22: 0.2177 REMARK 3 T33: 0.2839 T12: 0.0059 REMARK 3 T13: -0.0084 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.1894 L22: 0.3680 REMARK 3 L33: 0.1280 L12: -0.2472 REMARK 3 L13: -0.0460 L23: 0.1331 REMARK 3 S TENSOR REMARK 3 S11: -0.0769 S12: 0.0453 S13: -0.0954 REMARK 3 S21: -0.0871 S22: 0.0212 S23: 0.2326 REMARK 3 S31: 0.0047 S32: -0.1739 S33: 0.0500 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 340:375) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2146 73.0002 60.2600 REMARK 3 T TENSOR REMARK 3 T11: 0.1533 T22: 0.1836 REMARK 3 T33: 0.2079 T12: 0.0210 REMARK 3 T13: -0.0047 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.2946 L22: 0.1063 REMARK 3 L33: 0.5677 L12: 0.0840 REMARK 3 L13: 0.0697 L23: 0.2373 REMARK 3 S TENSOR REMARK 3 S11: -0.0249 S12: -0.0867 S13: 0.0766 REMARK 3 S21: -0.0232 S22: -0.0571 S23: 0.0529 REMARK 3 S31: -0.0143 S32: -0.1800 S33: 0.0728 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 376:400) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2783 60.6398 69.4125 REMARK 3 T TENSOR REMARK 3 T11: 0.2038 T22: 0.2465 REMARK 3 T33: 0.2209 T12: -0.0054 REMARK 3 T13: 0.0366 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 0.5298 L22: 0.9737 REMARK 3 L33: 0.4836 L12: 0.4186 REMARK 3 L13: 0.0579 L23: 0.0522 REMARK 3 S TENSOR REMARK 3 S11: 0.0100 S12: -0.4433 S13: 0.1399 REMARK 3 S21: 0.2880 S22: -0.1888 S23: 0.1857 REMARK 3 S31: 0.0355 S32: -0.1407 S33: 0.1358 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN A AND RESID 484:484) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7942 78.3751 64.5592 REMARK 3 T TENSOR REMARK 3 T11: 0.2001 T22: 0.1604 REMARK 3 T33: 0.3146 T12: 0.0125 REMARK 3 T13: 0.0385 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.8631 L22: 0.0358 REMARK 3 L33: 0.2768 L12: -0.0944 REMARK 3 L13: -0.1547 L23: -0.0379 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: -0.1159 S13: -0.2460 REMARK 3 S21: -0.0735 S22: -0.0855 S23: -0.1311 REMARK 3 S31: -0.0209 S32: 0.0589 S33: 0.0372 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 FLAVORUBREDOXIN WAS MODELED FROM RESIDUE 2 TO 400, BECAUSE REMARK 3 RESIDUES 401 TO 479 WERE NOT VISIBLE DUE TO DISORDER. HOWEVER, THE REMARK 3 HEAVIER ATOMS FROM THE MISSING C-TERMINAL RUBREDOXIN DOMAIN, FE- REMARK 3 4S, REMARK 3 WERE DETECTED AND VALIDATED THROUGH ITS STEREOCHEMISTRY. REMARK 3 FLAVORUBREDOXIN REFINEMENT CONVERGED TO RWORK AND RFREE OF 0.169 REMARK 3 AND 0.185, RESPECTIVELY, USING A RFREE TEST SET SIZE OF 3.32% REMARK 3 (1648 REFLECTIONS). THE FINAL MODEL THEN WAS REFINED VERSUS THE REMARK 3 FULL DATA, RESULTING A FINAL R VALUE OF 0.166. REMARK 4 REMARK 4 5LMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9722 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49678 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 59.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11900 REMARK 200 FOR THE DATA SET : 46.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4D02 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 UL OF PROTEIN AT15 MG/ML WITH 0.8 REMARK 280 UL OF CRYSTALLIZATION SOLUTION (0.2M NA-CACODYLATE PH 6.5, 0.2 M REMARK 280 MG-ACETATE, 20% PEG8000) AND 0.2 UL OF 0.1 MOLAR HEXAMINE COBALT REMARK 280 (III)., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 304K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 6 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z REMARK 290 6555 X-Y,X,Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 75.23550 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 130.31171 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 95.36100 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 75.23550 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 130.31171 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 95.36100 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 75.23550 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 130.31171 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 95.36100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 806 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 987 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 996 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 401 REMARK 465 PRO A 402 REMARK 465 GLN A 403 REMARK 465 SER A 404 REMARK 465 THR A 405 REMARK 465 VAL A 406 REMARK 465 ASN A 407 REMARK 465 THR A 408 REMARK 465 VAL A 409 REMARK 465 VAL A 410 REMARK 465 LYS A 411 REMARK 465 GLU A 412 REMARK 465 GLU A 413 REMARK 465 THR A 414 REMARK 465 SER A 415 REMARK 465 ALA A 416 REMARK 465 THR A 417 REMARK 465 THR A 418 REMARK 465 THR A 419 REMARK 465 ALA A 420 REMARK 465 ASP A 421 REMARK 465 LEU A 422 REMARK 465 GLY A 423 REMARK 465 PRO A 424 REMARK 465 ARG A 425 REMARK 465 MET A 426 REMARK 465 GLN A 427 REMARK 465 SER A 429 REMARK 465 VAL A 430 REMARK 465 GLN A 432 REMARK 465 TRP A 433 REMARK 465 ILE A 434 REMARK 465 TYR A 435 REMARK 465 ASP A 436 REMARK 465 PRO A 437 REMARK 465 ALA A 438 REMARK 465 LYS A 439 REMARK 465 GLY A 440 REMARK 465 GLU A 441 REMARK 465 PRO A 442 REMARK 465 MET A 443 REMARK 465 GLN A 444 REMARK 465 ASP A 445 REMARK 465 VAL A 446 REMARK 465 ALA A 447 REMARK 465 PRO A 448 REMARK 465 GLY A 449 REMARK 465 THR A 450 REMARK 465 PRO A 451 REMARK 465 TRP A 452 REMARK 465 SER A 453 REMARK 465 GLU A 454 REMARK 465 VAL A 455 REMARK 465 PRO A 456 REMARK 465 ASP A 457 REMARK 465 ASN A 458 REMARK 465 PHE A 459 REMARK 465 LEU A 460 REMARK 465 PRO A 462 REMARK 465 GLU A 463 REMARK 465 SER A 465 REMARK 465 LEU A 466 REMARK 465 GLY A 467 REMARK 465 LYS A 468 REMARK 465 ASP A 469 REMARK 465 VAL A 470 REMARK 465 PHE A 471 REMARK 465 GLU A 472 REMARK 465 GLU A 473 REMARK 465 LEU A 474 REMARK 465 ALA A 475 REMARK 465 SER A 476 REMARK 465 GLU A 477 REMARK 465 ALA A 478 REMARK 465 LYS A 479 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 232 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 7 -112.43 44.98 REMARK 500 GLU A 42 -133.64 -116.75 REMARK 500 ASP A 49 166.52 67.91 REMARK 500 THR A 50 -136.97 -115.56 REMARK 500 HIS A 79 132.21 -172.00 REMARK 500 ASN A 165 -129.21 50.76 REMARK 500 ASN A 317 10.12 59.11 REMARK 500 TRP A 348 -84.18 -142.08 REMARK 500 TRP A 375 -138.12 49.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 996 DISTANCE = 5.96 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FEO A 501 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 79 NE2 REMARK 620 2 FEO A 501 O 109.9 REMARK 620 3 GLU A 81 OE2 93.1 83.9 REMARK 620 4 HIS A 147 NE2 99.0 151.1 94.0 REMARK 620 5 ASP A 166 OD2 90.5 93.6 176.2 86.7 REMARK 620 6 PO4 A 503 O3 172.6 76.3 83.4 74.8 93.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FEO A 501 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 83 OD2 REMARK 620 2 FEO A 501 O 82.0 REMARK 620 3 HIS A 84 NE2 88.3 95.5 REMARK 620 4 ASP A 166 OD1 176.5 101.1 89.8 REMARK 620 5 HIS A 227 NE2 81.2 162.1 90.4 95.8 REMARK 620 6 PO4 A 503 O1 89.8 92.1 171.8 91.6 81.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 508 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 428 SG REMARK 620 2 CYS A 431 SG 106.7 REMARK 620 3 CYS A 461 SG 102.8 120.6 REMARK 620 4 CYS A 464 SG 109.1 111.7 105.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FEO A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACY A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4D02 RELATED DB: PDB REMARK 900 4D02 IS THE SAME PROTEIN BUT THE WITHOUT THE FE-4SG ATOM FROM REMARK 900 RUBREDOXIN DOMAIN OF THE FLAVORUBREDOXIN. DBREF 5LMC A 1 479 UNP Q46877 NORV_ECOLI 1 479 SEQRES 1 A 479 MET SER ILE VAL VAL LYS ASN ASN ILE HIS TRP VAL GLY SEQRES 2 A 479 GLN ARG ASP TRP GLU VAL ARG ASP PHE HIS GLY THR GLU SEQRES 3 A 479 TYR LYS THR LEU ARG GLY SER SER TYR ASN SER TYR LEU SEQRES 4 A 479 ILE ARG GLU GLU LYS ASN VAL LEU ILE ASP THR VAL ASP SEQRES 5 A 479 HIS LYS PHE SER ARG GLU PHE VAL GLN ASN LEU ARG ASN SEQRES 6 A 479 GLU ILE ASP LEU ALA ASP ILE ASP TYR ILE VAL ILE ASN SEQRES 7 A 479 HIS ALA GLU GLU ASP HIS ALA GLY ALA LEU THR GLU LEU SEQRES 8 A 479 MET ALA GLN ILE PRO ASP THR PRO ILE TYR CYS THR ALA SEQRES 9 A 479 ASN ALA ILE ASP SER ILE ASN GLY HIS HIS HIS HIS PRO SEQRES 10 A 479 GLU TRP ASN PHE ASN VAL VAL LYS THR GLY ASP THR LEU SEQRES 11 A 479 ASP ILE GLY ASN GLY LYS GLN LEU ILE PHE VAL GLU THR SEQRES 12 A 479 PRO MET LEU HIS TRP PRO ASP SER MET MET THR TYR LEU SEQRES 13 A 479 THR GLY ASP ALA VAL LEU PHE SER ASN ASP ALA PHE GLY SEQRES 14 A 479 GLN HIS TYR CYS ASP GLU HIS LEU PHE ASN ASP GLU VAL SEQRES 15 A 479 ASP GLN THR GLU LEU PHE GLU GLN CYS GLN ARG TYR TYR SEQRES 16 A 479 ALA ASN ILE LEU THR PRO PHE SER ARG LEU VAL THR PRO SEQRES 17 A 479 LYS ILE THR GLU ILE LEU GLY PHE ASN LEU PRO VAL ASP SEQRES 18 A 479 MET ILE ALA THR SER HIS GLY VAL VAL TRP ARG ASP ASN SEQRES 19 A 479 PRO THR GLN ILE VAL GLU LEU TYR LEU LYS TRP ALA ALA SEQRES 20 A 479 ASP TYR GLN GLU ASP ARG ILE THR ILE PHE TYR ASP THR SEQRES 21 A 479 MET SER ASN ASN THR ARG MET MET ALA ASP ALA ILE ALA SEQRES 22 A 479 GLN GLY ILE ALA GLU THR ASP PRO ARG VAL ALA VAL LYS SEQRES 23 A 479 ILE PHE ASN VAL ALA ARG SER ASP LYS ASN GLU ILE LEU SEQRES 24 A 479 THR ASN VAL PHE ARG SER LYS GLY VAL LEU VAL GLY THR SEQRES 25 A 479 SER THR MET ASN ASN VAL MET MET PRO LYS ILE ALA GLY SEQRES 26 A 479 LEU VAL GLU GLU MET THR GLY LEU ARG PHE ARG ASN LYS SEQRES 27 A 479 ARG ALA SER ALA PHE GLY SER HIS GLY TRP SER GLY GLY SEQRES 28 A 479 ALA VAL ASP ARG LEU SER THR ARG LEU GLN ASP ALA GLY SEQRES 29 A 479 PHE GLU MET SER LEU SER LEU LYS ALA LYS TRP ARG PRO SEQRES 30 A 479 ASP GLN ASP ALA LEU LYS LEU CYS ARG GLU HIS GLY ARG SEQRES 31 A 479 GLU ILE ALA ARG GLN TRP ALA LEU ALA PRO LEU PRO GLN SEQRES 32 A 479 SER THR VAL ASN THR VAL VAL LYS GLU GLU THR SER ALA SEQRES 33 A 479 THR THR THR ALA ASP LEU GLY PRO ARG MET GLN CYS SER SEQRES 34 A 479 VAL CYS GLN TRP ILE TYR ASP PRO ALA LYS GLY GLU PRO SEQRES 35 A 479 MET GLN ASP VAL ALA PRO GLY THR PRO TRP SER GLU VAL SEQRES 36 A 479 PRO ASP ASN PHE LEU CYS PRO GLU CYS SER LEU GLY LYS SEQRES 37 A 479 ASP VAL PHE GLU GLU LEU ALA SER GLU ALA LYS HET FEO A 501 3 HET FMN A 502 31 HET PO4 A 503 5 HET PO4 A 504 5 HET CAC A 505 5 HET ACY A 506 4 HET GOL A 507 6 HET FE A 508 1 HETNAM FEO MU-OXO-DIIRON HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM PO4 PHOSPHATE ION HETNAM CAC CACODYLATE ION HETNAM ACY ACETIC ACID HETNAM GOL GLYCEROL HETNAM FE FE (III) ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN CAC DIMETHYLARSINATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FEO FE2 O FORMUL 3 FMN C17 H21 N4 O9 P FORMUL 4 PO4 2(O4 P 3-) FORMUL 6 CAC C2 H6 AS O2 1- FORMUL 7 ACY C2 H4 O2 FORMUL 8 GOL C3 H8 O3 FORMUL 9 FE FE 3+ FORMUL 10 HOH *396(H2 O) HELIX 1 AA1 ASP A 52 LYS A 54 5 3 HELIX 2 AA2 PHE A 55 ILE A 67 1 13 HELIX 3 AA3 ASP A 68 ILE A 72 5 5 HELIX 4 AA4 ALA A 87 ILE A 95 1 9 HELIX 5 AA5 THR A 103 HIS A 115 1 13 HELIX 6 AA6 PHE A 178 VAL A 182 5 5 HELIX 7 AA7 ASP A 183 LEU A 199 1 17 HELIX 8 AA8 PHE A 202 GLY A 215 1 14 HELIX 9 AA9 PRO A 235 ALA A 247 1 13 HELIX 10 AB1 ASN A 263 ASP A 280 1 18 HELIX 11 AB2 ASP A 294 SER A 305 1 12 HELIX 12 AB3 MET A 320 ARG A 334 1 15 HELIX 13 AB4 GLY A 351 ALA A 363 1 13 HELIX 14 AB5 ASP A 378 ALA A 397 1 20 SHEET 1 AA1 7 ILE A 3 LYS A 6 0 SHEET 2 AA1 7 ILE A 9 TRP A 11 -1 O TRP A 11 N ILE A 3 SHEET 3 AA1 7 TYR A 38 ARG A 41 -1 O LEU A 39 N HIS A 10 SHEET 4 AA1 7 ASN A 45 ILE A 48 -1 O ILE A 48 N TYR A 38 SHEET 5 AA1 7 TYR A 74 VAL A 76 1 O VAL A 76 N LEU A 47 SHEET 6 AA1 7 ILE A 100 CYS A 102 1 O TYR A 101 N ILE A 75 SHEET 7 AA1 7 PHE A 121 VAL A 123 1 O ASN A 122 N ILE A 100 SHEET 1 AA2 2 GLN A 14 ASP A 16 0 SHEET 2 AA2 2 SER A 33 TYR A 35 -1 O TYR A 35 N GLN A 14 SHEET 1 AA3 2 ASP A 21 PHE A 22 0 SHEET 2 AA3 2 TYR A 27 LYS A 28 -1 O TYR A 27 N PHE A 22 SHEET 1 AA4 6 THR A 129 GLY A 133 0 SHEET 2 AA4 6 LYS A 136 GLU A 142 -1 O LEU A 138 N LEU A 130 SHEET 3 AA4 6 MET A 152 LEU A 156 -1 O TYR A 155 N ILE A 139 SHEET 4 AA4 6 VAL A 161 ASN A 165 -1 O PHE A 163 N THR A 154 SHEET 5 AA4 6 MET A 222 THR A 225 1 O MET A 222 N LEU A 162 SHEET 6 AA4 6 VAL A 230 TRP A 231 -1 O TRP A 231 N ILE A 223 SHEET 1 AA5 5 ALA A 284 ASN A 289 0 SHEET 2 AA5 5 ARG A 253 TYR A 258 1 N ILE A 256 O LYS A 286 SHEET 3 AA5 5 GLY A 307 GLY A 311 1 O GLY A 311 N PHE A 257 SHEET 4 AA5 5 ARG A 339 HIS A 346 1 O ARG A 339 N VAL A 308 SHEET 5 AA5 5 GLU A 366 MET A 367 1 O GLU A 366 N ALA A 340 SHEET 1 AA6 5 ALA A 284 ASN A 289 0 SHEET 2 AA6 5 ARG A 253 TYR A 258 1 N ILE A 256 O LYS A 286 SHEET 3 AA6 5 GLY A 307 GLY A 311 1 O GLY A 311 N PHE A 257 SHEET 4 AA6 5 ARG A 339 HIS A 346 1 O ARG A 339 N VAL A 308 SHEET 5 AA6 5 LEU A 371 LYS A 374 1 O LEU A 371 N ALA A 342 SHEET 1 AA7 2 THR A 314 MET A 315 0 SHEET 2 AA7 2 VAL A 318 MET A 319 -1 O VAL A 318 N MET A 315 LINK NE2 HIS A 79 FE2 FEO A 501 1555 1555 2.18 LINK OE2 GLU A 81 FE2 FEO A 501 1555 1555 2.16 LINK OD2 ASP A 83 FE1 FEO A 501 1555 1555 2.32 LINK NE2 HIS A 84 FE1 FEO A 501 1555 1555 2.05 LINK NE2 HIS A 147 FE2 FEO A 501 1555 1555 2.18 LINK OD1 ASP A 166 FE1 FEO A 501 1555 1555 2.09 LINK OD2 ASP A 166 FE2 FEO A 501 1555 1555 2.07 LINK NE2 HIS A 227 FE1 FEO A 501 1555 1555 2.18 LINK SG CYS A 428 FE FE A 508 1555 1555 2.49 LINK SG CYS A 431 FE FE A 508 1555 1555 2.47 LINK SG CYS A 461 FE FE A 508 1555 1555 2.18 LINK SG CYS A 464 FE FE A 508 1555 1555 2.34 LINK FE1 FEO A 501 O1 PO4 A 503 1555 1555 2.07 LINK FE2 FEO A 501 O3 PO4 A 503 1555 1555 2.74 CISPEP 1 LEU A 146 HIS A 147 0 10.19 SITE 1 AC1 8 HIS A 79 GLU A 81 ASP A 83 HIS A 84 SITE 2 AC1 8 HIS A 147 ASP A 166 HIS A 227 PO4 A 503 SITE 1 AC2 25 HIS A 23 GLU A 81 TRP A 148 THR A 260 SITE 2 AC2 25 MET A 261 SER A 262 ASN A 263 ASN A 264 SITE 3 AC2 25 THR A 265 SER A 313 THR A 314 MET A 315 SITE 4 AC2 25 ASN A 316 ASN A 317 SER A 345 HIS A 346 SITE 5 AC2 25 GLY A 347 TRP A 348 SER A 349 GLY A 350 SITE 6 AC2 25 TRP A 375 HOH A 617 HOH A 712 HOH A 760 SITE 7 AC2 25 HOH A 862 SITE 1 AC3 10 HIS A 23 GLU A 81 ASP A 83 HIS A 147 SITE 2 AC3 10 ASP A 166 HIS A 171 TYR A 194 ILE A 198 SITE 3 AC3 10 HIS A 227 FEO A 501 SITE 1 AC4 2 ARG A 64 HOH A 827 SITE 1 AC5 5 ASP A 68 ALA A 70 ASP A 71 ASP A 73 SITE 2 AC5 5 HOH A 651 SITE 1 AC6 2 HIS A 53 GLY A 86 SITE 1 AC7 5 SER A 357 MET A 367 SER A 368 HOH A 605 SITE 2 AC7 5 HOH A 745 SITE 1 AC8 4 CYS A 428 CYS A 431 CYS A 461 CYS A 464 CRYST1 150.471 150.471 95.361 90.00 90.00 120.00 P 6 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006646 0.003837 0.000000 0.00000 SCALE2 0.000000 0.007674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010486 0.00000