HEADER TRANSCRIPTION 30-JUL-16 5LME TITLE SPECIFIC-DNA BINDING ACTIVITY OF THE CROSS-BRACE ZINC FINGER MOTIF OF TITLE 2 THE PIGGYBAC TRANSPOSASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PIGGYBAC TRANSPOSASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL CYSTEINE-RICH DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: TRICHOPLUSIA NI; SOURCE 4 ORGANISM_COMMON: CABBAGE LOOPER; SOURCE 5 ORGANISM_TAXID: 7111 KEYWDS TRANSPOSASE PIGGYBAC DNA-BINDING ZINC-FINGER, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 24 AUTHOR N.MORELLET,J.A.TAYLOR,S.WIENINGER,S.MORIAU,X.LI,E.LESCOP,N.MATHY, AUTHOR 2 J.BISCHEROUR,M.BETERMIER,B.BARDIAUX,M.NILGES,N.L.CRAIG,A.B.HICKMAN, AUTHOR 3 F.DYDA,E.GUITTET REVDAT 5 14-JUN-23 5LME 1 REMARK REVDAT 4 08-MAY-19 5LME 1 REMARK REVDAT 3 04-APR-18 5LME 1 JRNL REVDAT 2 14-FEB-18 5LME 1 COMPND JRNL REVDAT 1 20-DEC-17 5LME 0 JRNL AUTH N.MORELLET,X.LI,S.A.WIENINGER,J.L.TAYLOR,J.BISCHEROUR, JRNL AUTH 2 S.MORIAU,E.LESCOP,B.BARDIAUX,N.MATHY,N.ASSRIR,M.BETERMIER, JRNL AUTH 3 M.NILGES,A.B.HICKMAN,F.DYDA,N.L.CRAIG,E.GUITTET JRNL TITL SEQUENCE-SPECIFIC DNA BINDING ACTIVITY OF THE CROSS-BRACE JRNL TITL 2 ZINC FINGER MOTIF OF THE PIGGYBAC TRANSPOSASE. JRNL REF NUCLEIC ACIDS RES. V. 46 2660 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 29385532 JRNL DOI 10.1093/NAR/GKY044 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TWO-STATE ENSEMBLE. SIMULTANEOUSLY REMARK 3 OPTIMIZED STATES ARE REPRESENTED BY SUCCESSIVE MODELS (1 AND 2, REMARK 3 3 AND 4 ETC.), WHERE ODD NUMBERS INDICATE STATE KF AND EVEN REMARK 3 NUMBERS STATE IF. REMARK 4 REMARK 4 5LME COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000678. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 293 REMARK 210 PH : 6.5; 6.7 REMARK 210 IONIC STRENGTH : 200; 200 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 500 UM C-TER PIGGYBAC, 1500 UM REMARK 210 ZNCL2, 5 MM DTT, 200 MM SODIUM REMARK 210 CHLORIDE, 10 % 100% LABELLING REMARK 210 D2O, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; 2D NOESY; 2D DOSY; 2D REMARK 210 HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 950 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE II REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 4000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 24 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 37 -43.88 74.10 REMARK 500 2 MET A 2 65.11 -102.04 REMARK 500 2 ILE A 15 78.43 -101.95 REMARK 500 3 HIS A 34 -61.73 -95.22 REMARK 500 3 ASP A 37 -52.03 -164.96 REMARK 500 3 CYS A 42 -165.38 -104.88 REMARK 500 4 ARG A 5 48.75 -84.38 REMARK 500 4 ASP A 37 -51.03 70.72 REMARK 500 5 ASP A 37 -34.42 71.55 REMARK 500 5 CYS A 42 -60.03 -98.34 REMARK 500 6 LYS A 3 87.21 60.48 REMARK 500 6 ARG A 5 21.38 -78.30 REMARK 500 6 ARG A 16 77.11 53.19 REMARK 500 7 ARG A 5 41.78 -93.53 REMARK 500 7 CYS A 26 -22.72 -142.81 REMARK 500 7 ASP A 37 -46.57 -168.57 REMARK 500 7 CYS A 42 -88.66 -157.82 REMARK 500 8 ARG A 16 73.11 56.56 REMARK 500 9 LYS A 3 78.61 62.66 REMARK 500 10 ILE A 15 77.47 -107.16 REMARK 500 10 ASP A 37 -42.04 72.40 REMARK 500 11 ILE A 15 71.93 -101.48 REMARK 500 11 ARG A 16 92.49 -61.93 REMARK 500 11 ASP A 37 32.85 -172.28 REMARK 500 12 MET A 38 151.53 172.05 REMARK 500 13 ARG A 5 37.09 -78.83 REMARK 500 13 ARG A 16 75.51 53.10 REMARK 500 13 HIS A 34 -61.02 -99.21 REMARK 500 13 ASP A 37 -51.75 71.28 REMARK 500 13 CYS A 42 -68.35 -103.51 REMARK 500 14 MET A 2 29.33 -156.47 REMARK 500 14 LYS A 3 122.13 69.39 REMARK 500 14 ARG A 5 39.18 -83.65 REMARK 500 14 CYS A 26 -12.13 -149.96 REMARK 500 15 LYS A 3 88.32 63.29 REMARK 500 15 HIS A 34 -64.76 -97.81 REMARK 500 15 ASP A 37 137.80 -178.03 REMARK 500 15 MET A 38 114.97 65.67 REMARK 500 15 SER A 41 54.08 -111.86 REMARK 500 15 CYS A 42 -156.54 -92.92 REMARK 500 16 ARG A 5 47.44 -103.93 REMARK 500 16 MET A 38 139.83 177.92 REMARK 500 17 MET A 2 55.21 -119.83 REMARK 500 17 ARG A 5 34.56 -92.04 REMARK 500 17 ILE A 36 -66.95 -90.96 REMARK 500 17 ASP A 37 -42.65 -142.33 REMARK 500 17 CYS A 42 -86.34 -127.94 REMARK 500 18 MET A 38 160.67 171.39 REMARK 500 19 LYS A 3 96.83 64.05 REMARK 500 19 ARG A 5 47.68 -80.33 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 101 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 8 SG REMARK 620 2 CYS A 11 SG 109.3 REMARK 620 3 CYS A 31 SG 107.8 110.2 REMARK 620 4 HIS A 34 ND1 109.4 109.3 110.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 23 SG REMARK 620 2 CYS A 26 SG 106.9 REMARK 620 3 CYS A 39 SG 107.8 111.2 REMARK 620 4 CYS A 42 SG 109.3 111.0 110.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 34028 RELATED DB: BMRB DBREF 5LME A 1 43 UNP Q27026 Q27026_TRINI 552 594 SEQRES 1 A 43 VAL MET LYS LYS ARG THR TYR CYS THR TYR CYS PRO SER SEQRES 2 A 43 LYS ILE ARG ARG LYS ALA ASN ALA SER CYS LYS LYS CYS SEQRES 3 A 43 LYS LYS VAL ILE CYS ARG GLU HIS ASN ILE ASP MET CYS SEQRES 4 A 43 GLN SER CYS PHE HET ZN A 101 1 HET ZN A 102 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) SHEET 1 AA1 2 ALA A 21 SER A 22 0 SHEET 2 AA1 2 VAL A 29 ILE A 30 -1 O ILE A 30 N ALA A 21 LINK SG CYS A 8 ZN ZN A 101 1555 1555 2.30 LINK SG CYS A 11 ZN ZN A 101 1555 1555 2.30 LINK SG CYS A 23 ZN ZN A 102 1555 1555 2.29 LINK SG CYS A 26 ZN ZN A 102 1555 1555 2.30 LINK SG CYS A 31 ZN ZN A 101 1555 1555 2.30 LINK ND1 HIS A 34 ZN ZN A 101 1555 1555 2.00 LINK SG CYS A 39 ZN ZN A 102 1555 1555 2.30 LINK SG CYS A 42 ZN ZN A 102 1555 1555 2.29 SITE 1 AC1 4 CYS A 8 CYS A 11 CYS A 31 HIS A 34 SITE 1 AC2 4 CYS A 23 CYS A 26 CYS A 39 CYS A 42 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1