HEADER RNA BINDING PROTEIN 30-JUL-16 5LMF TITLE STRUCTURE OF C-TERMINAL DOMAIN FROM S. CEREVISIAE PAT1 DECAPPING TITLE 2 ACTIVATOR BOUND TO DCP2 HLM3 PEPTIDE (REGION 484-500) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TOPOISOMERASE 2-ASSOCIATED PROTEIN PAT1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 437-795; COMPND 5 SYNONYM: DECAPPING ACTIVATOR AND TRANSLATIONAL REPRESSOR PAT1, COMPND 6 TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1,MRNA TURNOVER PROTEIN 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: MRNA DECAPPING PROTEIN 2; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: UNP RESIDUES 483-499; COMPND 13 SYNONYM: DCP2 DECAPPING FACTOR; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: PAT1, MRT1, YCR077C, YCR77C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 11 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 12 ORGANISM_TAXID: 4932 KEYWDS PROTEIN PEPTIDE COMPLEX, ISOMERASE, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CHARENTON,C.GAUDON-PLESSE,Z.FOURATI,V.TAVERNITI,R.BACK, AUTHOR 2 O.KOLESNIKOVA,B.SERAPHIN,M.GRAILLE REVDAT 6 10-JAN-24 5LMF 1 LINK REVDAT 5 26-SEP-18 5LMF 1 TITLE REVDAT 4 15-NOV-17 5LMF 1 JRNL REVDAT 3 08-NOV-17 5LMF 1 JRNL REVDAT 2 01-NOV-17 5LMF 1 JRNL REVDAT 1 16-AUG-17 5LMF 0 JRNL AUTH C.CHARENTON,C.GAUDON-PLESSE,Z.FOURATI,V.TAVERNITI,R.BACK, JRNL AUTH 2 O.KOLESNIKOVA,B.SERAPHIN,M.GRAILLE JRNL TITL A UNIQUE SURFACE ON PAT1 C-TERMINAL DOMAIN DIRECTLY JRNL TITL 2 INTERACTS WITH DCP2 DECAPPING ENZYME AND XRN1 5'-3' MRNA JRNL TITL 3 EXONUCLEASE IN YEAST. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E9493 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 29078363 JRNL DOI 10.1073/PNAS.1711680114 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.48 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 41247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2062 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.21 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.68 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2982 REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2833 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 149 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5409 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 13.39840 REMARK 3 B22 (A**2) : 5.40510 REMARK 3 B33 (A**2) : -18.80350 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.390 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.244 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.192 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.249 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.196 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5518 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7419 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2037 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 163 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 744 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5518 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 758 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6602 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.07 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.36 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 19.54 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 12.8167 23.0446 36.4588 REMARK 3 T TENSOR REMARK 3 T11: -0.1628 T22: -0.1551 REMARK 3 T33: 0.0865 T12: -0.0011 REMARK 3 T13: -0.0070 T23: 0.0286 REMARK 3 L TENSOR REMARK 3 L11: 0.8134 L22: 1.0921 REMARK 3 L33: 0.4942 L12: -0.4516 REMARK 3 L13: 0.2906 L23: -0.3209 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: -0.0831 S13: -0.0486 REMARK 3 S21: -0.0109 S22: 0.0114 S23: 0.1277 REMARK 3 S31: -0.0279 S32: -0.0835 S33: -0.0271 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): 26.6195 7.7788 32.5149 REMARK 3 T TENSOR REMARK 3 T11: -0.1904 T22: -0.2083 REMARK 3 T33: 0.0780 T12: -0.0032 REMARK 3 T13: -0.0334 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.7050 L22: 1.8971 REMARK 3 L33: 0.5786 L12: -0.4621 REMARK 3 L13: 0.2094 L23: -0.1288 REMARK 3 S TENSOR REMARK 3 S11: 0.0678 S12: -0.0013 S13: -0.0602 REMARK 3 S21: -0.1732 S22: -0.1157 S23: 0.2826 REMARK 3 S31: 0.0952 S32: 0.0389 S33: 0.0479 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): 38.4124 -8.1170 53.9925 REMARK 3 T TENSOR REMARK 3 T11: 0.0350 T22: -0.1619 REMARK 3 T33: 0.1078 T12: 0.0717 REMARK 3 T13: -0.0484 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.4356 L22: 1.7057 REMARK 3 L33: 1.3442 L12: -1.1916 REMARK 3 L13: 0.3240 L23: 0.2856 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: -0.0086 S13: -0.0002 REMARK 3 S21: 0.0810 S22: -0.0324 S23: -0.0163 REMARK 3 S31: 0.0588 S32: 0.0502 S33: 0.0382 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): 1.1602 39.2629 14.7615 REMARK 3 T TENSOR REMARK 3 T11: -0.0777 T22: -0.0540 REMARK 3 T33: 0.1166 T12: 0.0617 REMARK 3 T13: -0.0878 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 2.4170 L22: 0.3446 REMARK 3 L33: 0.3146 L12: -0.6627 REMARK 3 L13: -0.9518 L23: 0.6957 REMARK 3 S TENSOR REMARK 3 S11: 0.0290 S12: 0.0487 S13: 0.0057 REMARK 3 S21: -0.0583 S22: -0.0130 S23: 0.0393 REMARK 3 S31: -0.0663 S32: 0.0893 S33: -0.0160 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LMF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000987. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41458 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10200 REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4OGP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2 ; 20% PEG3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 297.1500K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.18000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.46000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 63.48500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.18000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.46000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.48500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.18000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.46000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.48500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.18000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.46000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.48500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 428 REMARK 465 HIS A 429 REMARK 465 HIS A 430 REMARK 465 HIS A 431 REMARK 465 HIS A 432 REMARK 465 HIS A 433 REMARK 465 HIS A 434 REMARK 465 SER A 435 REMARK 465 SER A 436 REMARK 465 GLY A 437 REMARK 465 SER A 438 REMARK 465 SER A 439 REMARK 465 SER A 440 REMARK 465 THR A 441 REMARK 465 GLY A 442 REMARK 465 SER A 443 REMARK 465 SER A 444 REMARK 465 ALA A 445 REMARK 465 ALA A 446 REMARK 465 ALA A 447 REMARK 465 VAL A 448 REMARK 465 ALA A 449 REMARK 465 SER A 450 REMARK 465 LYS A 451 REMARK 465 GLN A 452 REMARK 465 ARG A 453 REMARK 465 ARG A 454 REMARK 465 ARG A 455 REMARK 465 SER A 456 REMARK 465 SER A 457 REMARK 465 TYR A 458 REMARK 465 ALA A 459 REMARK 465 PHE A 460 REMARK 465 ASN A 461 REMARK 465 ASN A 462 REMARK 465 GLY A 463 REMARK 465 ASN A 464 REMARK 465 GLY A 465 REMARK 465 ALA A 466 REMARK 465 THR A 467 REMARK 465 ASN A 468 REMARK 465 LEU A 469 REMARK 465 ASN A 470 REMARK 465 LYS A 471 REMARK 465 ASP A 647 REMARK 465 SER A 648 REMARK 465 SER A 649 REMARK 465 ARG A 650 REMARK 465 SER A 651 REMARK 465 ASN A 652 REMARK 465 ILE A 653 REMARK 465 LEU A 654 REMARK 465 SER A 655 REMARK 465 SER A 656 REMARK 465 PRO A 657 REMARK 465 GLU A 658 REMARK 465 ILE A 659 REMARK 465 MET B 428 REMARK 465 HIS B 429 REMARK 465 HIS B 430 REMARK 465 HIS B 431 REMARK 465 HIS B 432 REMARK 465 HIS B 433 REMARK 465 HIS B 434 REMARK 465 SER B 435 REMARK 465 SER B 436 REMARK 465 GLY B 437 REMARK 465 SER B 438 REMARK 465 SER B 439 REMARK 465 SER B 440 REMARK 465 THR B 441 REMARK 465 GLY B 442 REMARK 465 SER B 443 REMARK 465 SER B 444 REMARK 465 ALA B 445 REMARK 465 ALA B 446 REMARK 465 ALA B 447 REMARK 465 VAL B 448 REMARK 465 ALA B 449 REMARK 465 SER B 450 REMARK 465 LYS B 451 REMARK 465 GLN B 452 REMARK 465 ARG B 453 REMARK 465 ARG B 454 REMARK 465 ARG B 455 REMARK 465 SER B 456 REMARK 465 SER B 457 REMARK 465 TYR B 458 REMARK 465 ALA B 459 REMARK 465 PHE B 460 REMARK 465 ASN B 461 REMARK 465 ASN B 462 REMARK 465 GLY B 463 REMARK 465 ASN B 464 REMARK 465 GLY B 465 REMARK 465 ALA B 466 REMARK 465 THR B 467 REMARK 465 ASN B 468 REMARK 465 LEU B 469 REMARK 465 ASN B 470 REMARK 465 LYS B 471 REMARK 465 SER B 472 REMARK 465 SER B 600 REMARK 465 ASN B 601 REMARK 465 ASN B 602 REMARK 465 SER B 603 REMARK 465 LEU B 654 REMARK 465 SER B 655 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 514 55.90 -92.51 REMARK 500 SER A 675 -0.28 81.83 REMARK 500 ASN A 695 73.33 49.69 REMARK 500 ARG A 788 138.24 -172.25 REMARK 500 SER B 675 -10.50 81.04 REMARK 500 LEU B 795 -179.83 -65.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 544 OD2 REMARK 620 2 ASP A 544 OD2 0.0 REMARK 620 3 HOH A1147 O 93.9 93.9 REMARK 620 4 HOH A1147 O 95.1 95.1 170.8 REMARK 620 5 HOH A1174 O 96.6 96.6 97.1 83.8 REMARK 620 6 HOH A1174 O 175.2 175.2 81.4 89.5 84.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 807 DBREF 5LMF A 435 796 UNP P25644 PAT1_YEAST 435 796 DBREF 5LMF B 435 796 UNP P25644 PAT1_YEAST 435 796 DBREF 5LMF C 484 500 UNP B3LNX5 B3LNX5_YEAS1 483 499 DBREF 5LMF D 484 500 UNP B3LNX5 B3LNX5_YEAS1 483 499 SEQADV 5LMF MET A 428 UNP P25644 INITIATING METHIONINE SEQADV 5LMF HIS A 429 UNP P25644 EXPRESSION TAG SEQADV 5LMF HIS A 430 UNP P25644 EXPRESSION TAG SEQADV 5LMF HIS A 431 UNP P25644 EXPRESSION TAG SEQADV 5LMF HIS A 432 UNP P25644 EXPRESSION TAG SEQADV 5LMF HIS A 433 UNP P25644 EXPRESSION TAG SEQADV 5LMF HIS A 434 UNP P25644 EXPRESSION TAG SEQADV 5LMF ALA A 706 UNP P25644 GLN 706 CONFLICT SEQADV 5LMF ALA A 713 UNP P25644 LEU 713 CONFLICT SEQADV 5LMF MET B 428 UNP P25644 INITIATING METHIONINE SEQADV 5LMF HIS B 429 UNP P25644 EXPRESSION TAG SEQADV 5LMF HIS B 430 UNP P25644 EXPRESSION TAG SEQADV 5LMF HIS B 431 UNP P25644 EXPRESSION TAG SEQADV 5LMF HIS B 432 UNP P25644 EXPRESSION TAG SEQADV 5LMF HIS B 433 UNP P25644 EXPRESSION TAG SEQADV 5LMF HIS B 434 UNP P25644 EXPRESSION TAG SEQADV 5LMF ALA B 706 UNP P25644 GLN 706 CONFLICT SEQADV 5LMF ALA B 713 UNP P25644 LEU 713 CONFLICT SEQRES 1 A 369 MET HIS HIS HIS HIS HIS HIS SER SER GLY SER SER SER SEQRES 2 A 369 THR GLY SER SER ALA ALA ALA VAL ALA SER LYS GLN ARG SEQRES 3 A 369 ARG ARG SER SER TYR ALA PHE ASN ASN GLY ASN GLY ALA SEQRES 4 A 369 THR ASN LEU ASN LYS SER GLY GLY LYS LYS PHE ILE LEU SEQRES 5 A 369 GLU LEU ILE GLU THR VAL TYR GLU GLU ILE LEU ASP LEU SEQRES 6 A 369 GLU ALA ASN LEU ARG ASN GLY GLN GLN THR ASP SER THR SEQRES 7 A 369 ALA MET TRP GLU ALA LEU HIS ILE ASP ASP SER SER TYR SEQRES 8 A 369 ASP VAL ASN PRO PHE ILE SER MET LEU SER PHE ASP LYS SEQRES 9 A 369 GLY ILE LYS ILE MET PRO ARG ILE PHE ASN PHE LEU ASP SEQRES 10 A 369 LYS GLN GLN LYS LEU LYS ILE LEU GLN LYS ILE PHE ASN SEQRES 11 A 369 GLU LEU SER HIS LEU GLN ILE ILE ILE LEU SER SER TYR SEQRES 12 A 369 LYS THR THR PRO LYS PRO THR LEU THR GLN LEU LYS LYS SEQRES 13 A 369 VAL ASP LEU PHE GLN MET ILE ILE LEU LYS ILE ILE VAL SEQRES 14 A 369 SER PHE LEU SER ASN ASN SER ASN PHE ILE GLU ILE MET SEQRES 15 A 369 GLY LEU LEU LEU GLN LEU ILE ARG ASN ASN ASN VAL SER SEQRES 16 A 369 PHE LEU THR THR SER LYS ILE GLY LEU ASN LEU ILE THR SEQRES 17 A 369 ILE LEU ILE SER ARG ALA ALA LEU ILE LYS GLN ASP SER SEQRES 18 A 369 SER ARG SER ASN ILE LEU SER SER PRO GLU ILE SER THR SEQRES 19 A 369 TRP ASN GLU ILE TYR ASP LYS LEU PHE THR SER LEU GLU SEQRES 20 A 369 SER LYS ILE GLN LEU ILE PHE PRO PRO ARG GLU TYR ASN SEQRES 21 A 369 ASP HIS ILE MET ARG LEU GLN ASN ASP LYS PHE MET ASP SEQRES 22 A 369 GLU ALA TYR ILE TRP ALA PHE LEU ALA SER LEU ALA ALA SEQRES 23 A 369 SER GLY LYS LEU ASN HIS GLN ARG ILE ILE ILE ASP GLU SEQRES 24 A 369 VAL ARG ASP GLU ILE PHE ALA THR ILE ASN GLU ALA GLU SEQRES 25 A 369 THR LEU GLN LYS LYS GLU LYS GLU LEU SER VAL LEU PRO SEQRES 26 A 369 GLN ARG SER GLN GLU LEU ASP THR GLU LEU LYS SER ILE SEQRES 27 A 369 ILE TYR ASN LYS GLU LYS LEU TYR GLN ASP LEU ASN LEU SEQRES 28 A 369 PHE LEU ASN VAL MET GLY LEU VAL TYR ARG ASP GLY GLU SEQRES 29 A 369 ILE SER GLU LEU LYS SEQRES 1 B 369 MET HIS HIS HIS HIS HIS HIS SER SER GLY SER SER SER SEQRES 2 B 369 THR GLY SER SER ALA ALA ALA VAL ALA SER LYS GLN ARG SEQRES 3 B 369 ARG ARG SER SER TYR ALA PHE ASN ASN GLY ASN GLY ALA SEQRES 4 B 369 THR ASN LEU ASN LYS SER GLY GLY LYS LYS PHE ILE LEU SEQRES 5 B 369 GLU LEU ILE GLU THR VAL TYR GLU GLU ILE LEU ASP LEU SEQRES 6 B 369 GLU ALA ASN LEU ARG ASN GLY GLN GLN THR ASP SER THR SEQRES 7 B 369 ALA MET TRP GLU ALA LEU HIS ILE ASP ASP SER SER TYR SEQRES 8 B 369 ASP VAL ASN PRO PHE ILE SER MET LEU SER PHE ASP LYS SEQRES 9 B 369 GLY ILE LYS ILE MET PRO ARG ILE PHE ASN PHE LEU ASP SEQRES 10 B 369 LYS GLN GLN LYS LEU LYS ILE LEU GLN LYS ILE PHE ASN SEQRES 11 B 369 GLU LEU SER HIS LEU GLN ILE ILE ILE LEU SER SER TYR SEQRES 12 B 369 LYS THR THR PRO LYS PRO THR LEU THR GLN LEU LYS LYS SEQRES 13 B 369 VAL ASP LEU PHE GLN MET ILE ILE LEU LYS ILE ILE VAL SEQRES 14 B 369 SER PHE LEU SER ASN ASN SER ASN PHE ILE GLU ILE MET SEQRES 15 B 369 GLY LEU LEU LEU GLN LEU ILE ARG ASN ASN ASN VAL SER SEQRES 16 B 369 PHE LEU THR THR SER LYS ILE GLY LEU ASN LEU ILE THR SEQRES 17 B 369 ILE LEU ILE SER ARG ALA ALA LEU ILE LYS GLN ASP SER SEQRES 18 B 369 SER ARG SER ASN ILE LEU SER SER PRO GLU ILE SER THR SEQRES 19 B 369 TRP ASN GLU ILE TYR ASP LYS LEU PHE THR SER LEU GLU SEQRES 20 B 369 SER LYS ILE GLN LEU ILE PHE PRO PRO ARG GLU TYR ASN SEQRES 21 B 369 ASP HIS ILE MET ARG LEU GLN ASN ASP LYS PHE MET ASP SEQRES 22 B 369 GLU ALA TYR ILE TRP ALA PHE LEU ALA SER LEU ALA ALA SEQRES 23 B 369 SER GLY LYS LEU ASN HIS GLN ARG ILE ILE ILE ASP GLU SEQRES 24 B 369 VAL ARG ASP GLU ILE PHE ALA THR ILE ASN GLU ALA GLU SEQRES 25 B 369 THR LEU GLN LYS LYS GLU LYS GLU LEU SER VAL LEU PRO SEQRES 26 B 369 GLN ARG SER GLN GLU LEU ASP THR GLU LEU LYS SER ILE SEQRES 27 B 369 ILE TYR ASN LYS GLU LYS LEU TYR GLN ASP LEU ASN LEU SEQRES 28 B 369 PHE LEU ASN VAL MET GLY LEU VAL TYR ARG ASP GLY GLU SEQRES 29 B 369 ILE SER GLU LEU LYS SEQRES 1 C 17 THR ALA HIS SER ASN SER GLN ALA LEU LEU ASP LEU LEU SEQRES 2 C 17 LYS LYS PRO THR SEQRES 1 D 17 THR ALA HIS SER ASN SER GLN ALA LEU LEU ASP LEU LEU SEQRES 2 D 17 LYS LYS PRO THR HET MG A1001 1 HET CL A1002 1 HET EDO A1003 4 HET EDO A1004 4 HET EDO A1005 4 HET CL B 801 1 HET EDO B 802 4 HET EDO B 803 4 HET EDO B 804 4 HET EDO B 805 4 HET EDO B 806 4 HET EDO B 807 4 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 MG MG 2+ FORMUL 6 CL 2(CL 1-) FORMUL 7 EDO 9(C2 H6 O2) FORMUL 17 HOH *143(H2 O) HELIX 1 AA1 GLY A 474 ASN A 498 1 25 HELIX 2 AA2 SER A 504 LEU A 511 1 8 HELIX 3 AA3 ASN A 521 LEU A 527 1 7 HELIX 4 AA4 PHE A 529 ILE A 535 1 7 HELIX 5 AA5 ILE A 535 ASN A 541 1 7 HELIX 6 AA6 ASP A 544 GLU A 558 1 15 HELIX 7 AA7 LEU A 559 HIS A 561 5 3 HELIX 8 AA8 LEU A 562 SER A 569 1 8 HELIX 9 AA9 THR A 577 ASN A 601 1 25 HELIX 10 AB1 ASN A 604 ASN A 618 1 15 HELIX 11 AB2 ASN A 620 THR A 625 1 6 HELIX 12 AB3 SER A 627 LYS A 645 1 19 HELIX 13 AB4 THR A 661 GLU A 674 1 14 HELIX 14 AB5 LYS A 676 PHE A 681 5 6 HELIX 15 AB6 PRO A 683 ASN A 695 1 13 HELIX 16 AB7 GLU A 701 SER A 714 1 14 HELIX 17 AB8 LYS A 716 VAL A 750 1 35 HELIX 18 AB9 SER A 755 MET A 783 1 29 HELIX 19 AC1 GLY B 474 ASN B 498 1 25 HELIX 20 AC2 SER B 504 LEU B 511 1 8 HELIX 21 AC3 ASN B 521 LEU B 527 1 7 HELIX 22 AC4 PHE B 529 ILE B 535 1 7 HELIX 23 AC5 ILE B 535 ASN B 541 1 7 HELIX 24 AC6 ASP B 544 GLU B 558 1 15 HELIX 25 AC7 LEU B 562 SER B 569 1 8 HELIX 26 AC8 THR B 577 LEU B 599 1 23 HELIX 27 AC9 PHE B 605 ASN B 619 1 15 HELIX 28 AD1 ASN B 620 THR B 625 1 6 HELIX 29 AD2 SER B 627 SER B 649 1 23 HELIX 30 AD3 PRO B 657 GLU B 674 1 18 HELIX 31 AD4 LYS B 676 PHE B 681 5 6 HELIX 32 AD5 PRO B 683 ASN B 695 1 13 HELIX 33 AD6 GLU B 701 GLY B 715 1 15 HELIX 34 AD7 LYS B 716 VAL B 727 1 12 HELIX 35 AD8 VAL B 727 VAL B 750 1 24 HELIX 36 AD9 SER B 755 ASN B 781 1 27 HELIX 37 AE1 ALA C 485 LYS C 497 1 13 HELIX 38 AE2 ALA D 485 LYS D 497 1 13 SHEET 1 AA1 2 LEU A 785 TYR A 787 0 SHEET 2 AA1 2 ILE A 792 GLU A 794 -1 O SER A 793 N VAL A 786 SHEET 1 AA2 2 LEU B 785 ARG B 788 0 SHEET 2 AA2 2 GLU B 791 GLU B 794 -1 O SER B 793 N VAL B 786 LINK OD2 ASP A 544 MG MG A1001 1555 1555 1.97 LINK OD2 ASP A 544 MG MG A1001 1555 2555 2.20 LINK MG MG A1001 O HOH A1147 1555 1555 2.33 LINK MG MG A1001 O HOH A1147 1555 2555 2.43 LINK MG MG A1001 O HOH A1174 1555 1555 2.44 LINK MG MG A1001 O HOH A1174 1555 2555 2.64 CISPEP 1 SER A 472 GLY A 473 0 0.42 CISPEP 2 GLY A 473 GLY A 474 0 -0.51 CISPEP 3 ASN A 601 ASN A 602 0 0.44 CISPEP 4 ARG A 788 ASP A 789 0 -5.12 CISPEP 5 GLY B 473 GLY B 474 0 -0.38 CISPEP 6 ASP B 519 VAL B 520 0 0.88 SITE 1 AC1 3 ASP A 544 HOH A1147 HOH A1174 SITE 1 AC2 3 ASN A 620 SER A 755 GLN A 756 SITE 1 AC3 5 SER A 675 ILE A 722 GLU A 726 HOH A1117 SITE 2 AC3 5 GLU B 685 SITE 1 AC4 3 GLU A 701 GLU A 730 HOH A1149 SITE 1 AC5 4 ASN A 736 GLU A 739 THR A 740 LYS B 716 SITE 1 AC6 2 LEU B 578 EDO B 807 SITE 1 AC7 5 PHE B 681 PRO B 682 ASN B 687 GLU B 701 SITE 2 AC7 5 GLU B 730 SITE 1 AC8 3 ASP B 700 ALA B 702 TYR B 703 SITE 1 AC9 7 ASP A 530 LYS A 534 TYR B 767 GLU B 770 SITE 2 AC9 7 LYS B 771 GLN B 774 HOH B 906 SITE 1 AD1 4 TYR B 773 TYR B 787 ASP B 789 GLY B 790 SITE 1 AD2 8 SER B 568 THR B 626 SER B 627 LYS B 628 SITE 2 AD2 8 PRO B 682 TYR B 686 TYR B 703 HOH B 902 SITE 1 AD3 6 THR A 671 LYS B 575 PRO B 576 THR B 577 SITE 2 AD3 6 HIS B 689 CL B 801 CRYST1 98.360 122.920 126.970 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010167 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008135 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007876 0.00000