data_5LN1 # _entry.id 5LN1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5LN1 WWPDB D_1200000860 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5LN1 _pdbx_database_status.recvd_initial_deposition_date 2016-08-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Keren-Kaplan, T.' 1 'Attali, I.' 2 'Levin-Kravets, O.' 3 'Prag, G.' 4 # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? UK ? ? primary 'Nat Commun' ? ? 2041-1723 ? ? 7 ? 12960 12960 'Structure of ubiquitylated-Rpn10 provides insight into its autoregulation mechanism.' 2016 ? 10.1038/ncomms12960 27698474 ? ? ? ? ? ? ? ? DK ? ? 1 'Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun.' ? ? 1744-3091 ? ? 68 ? 1120 1123 'Purification and crystallization of mono-ubiquitylated ubiquitin receptor Rpn10.' 2012 ? 10.1107/S1744309112034331 22949210 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Keren-Kaplan, T.' 1 ? primary 'Zeev Peters, L.' 2 ? primary 'Levin-Kravets, O.' 3 ? primary 'Attali, I.' 4 ? primary 'Kleifeld, O.' 5 ? primary 'Shohat, N.' 6 ? primary 'Artzi, S.' 7 ? primary 'Zucker, O.' 8 ? primary 'Pilzer, I.' 9 ? primary 'Reis, N.' 10 ? primary 'Glickman, M.H.' 11 ? primary 'Ben-Aroya, S.' 12 ? primary 'Prag, G.' 13 ? 1 'Keren-Kaplan, T.' 14 ? 1 'Prag, G.' 15 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 130.55 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5LN1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 107.290 _cell.length_a_esd ? _cell.length_b 49.700 _cell.length_b_esd ? _cell.length_c 81.330 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LN1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '26S proteasome regulatory subunit RPN10' 21624.496 1 ? ? 'UNP RESIDUES 1-191' ? 2 polymer man Polyubiquitin-B 8980.285 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GPPRMVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGL HDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDE FIAAVNNPQEETSHLLTVTPGPRLLYENIASSPII ; ;GPPRMVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGL HDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDE FIAAVNNPQEETSHLLTVTPGPRLLYENIASSPII ; A ? 2 'polypeptide(L)' no no ;GAMGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG G ; ;GAMGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG G ; U ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 PRO n 1 4 ARG n 1 5 MET n 1 6 VAL n 1 7 LEU n 1 8 GLU n 1 9 ALA n 1 10 THR n 1 11 VAL n 1 12 LEU n 1 13 VAL n 1 14 ILE n 1 15 ASP n 1 16 ASN n 1 17 SER n 1 18 GLU n 1 19 TYR n 1 20 SER n 1 21 ARG n 1 22 ASN n 1 23 GLY n 1 24 ASP n 1 25 PHE n 1 26 PRO n 1 27 ARG n 1 28 THR n 1 29 ARG n 1 30 PHE n 1 31 GLU n 1 32 ALA n 1 33 GLN n 1 34 ILE n 1 35 ASP n 1 36 SER n 1 37 VAL n 1 38 GLU n 1 39 PHE n 1 40 ILE n 1 41 PHE n 1 42 GLN n 1 43 ALA n 1 44 LYS n 1 45 ARG n 1 46 ASN n 1 47 SER n 1 48 ASN n 1 49 PRO n 1 50 GLU n 1 51 ASN n 1 52 THR n 1 53 VAL n 1 54 GLY n 1 55 LEU n 1 56 ILE n 1 57 SER n 1 58 GLY n 1 59 ALA n 1 60 GLY n 1 61 ALA n 1 62 ASN n 1 63 PRO n 1 64 ARG n 1 65 VAL n 1 66 LEU n 1 67 SER n 1 68 THR n 1 69 PHE n 1 70 THR n 1 71 ALA n 1 72 GLU n 1 73 PHE n 1 74 GLY n 1 75 LYS n 1 76 ILE n 1 77 LEU n 1 78 ALA n 1 79 GLY n 1 80 LEU n 1 81 HIS n 1 82 ASP n 1 83 THR n 1 84 GLN n 1 85 ILE n 1 86 GLU n 1 87 GLY n 1 88 LYS n 1 89 LEU n 1 90 HIS n 1 91 MET n 1 92 ALA n 1 93 THR n 1 94 ALA n 1 95 LEU n 1 96 GLN n 1 97 ILE n 1 98 ALA n 1 99 GLN n 1 100 LEU n 1 101 THR n 1 102 LEU n 1 103 LYS n 1 104 HIS n 1 105 ARG n 1 106 GLN n 1 107 ASN n 1 108 LYS n 1 109 VAL n 1 110 GLN n 1 111 HIS n 1 112 GLN n 1 113 ARG n 1 114 ILE n 1 115 VAL n 1 116 ALA n 1 117 PHE n 1 118 VAL n 1 119 CYS n 1 120 SER n 1 121 PRO n 1 122 ILE n 1 123 SER n 1 124 ASP n 1 125 SER n 1 126 ARG n 1 127 ASP n 1 128 GLU n 1 129 LEU n 1 130 ILE n 1 131 ARG n 1 132 LEU n 1 133 ALA n 1 134 LYS n 1 135 THR n 1 136 LEU n 1 137 LYS n 1 138 LYS n 1 139 ASN n 1 140 ASN n 1 141 VAL n 1 142 ALA n 1 143 VAL n 1 144 ASP n 1 145 ILE n 1 146 ILE n 1 147 ASN n 1 148 PHE n 1 149 GLY n 1 150 GLU n 1 151 ILE n 1 152 GLU n 1 153 GLN n 1 154 ASN n 1 155 THR n 1 156 GLU n 1 157 LEU n 1 158 LEU n 1 159 ASP n 1 160 GLU n 1 161 PHE n 1 162 ILE n 1 163 ALA n 1 164 ALA n 1 165 VAL n 1 166 ASN n 1 167 ASN n 1 168 PRO n 1 169 GLN n 1 170 GLU n 1 171 GLU n 1 172 THR n 1 173 SER n 1 174 HIS n 1 175 LEU n 1 176 LEU n 1 177 THR n 1 178 VAL n 1 179 THR n 1 180 PRO n 1 181 GLY n 1 182 PRO n 1 183 ARG n 1 184 LEU n 1 185 LEU n 1 186 TYR n 1 187 GLU n 1 188 ASN n 1 189 ILE n 1 190 ALA n 1 191 SER n 1 192 SER n 1 193 PRO n 1 194 ILE n 1 195 ILE n 2 1 GLY n 2 2 ALA n 2 3 MET n 2 4 GLY n 2 5 SER n 2 6 MET n 2 7 GLN n 2 8 ILE n 2 9 PHE n 2 10 VAL n 2 11 LYS n 2 12 THR n 2 13 LEU n 2 14 THR n 2 15 GLY n 2 16 LYS n 2 17 THR n 2 18 ILE n 2 19 THR n 2 20 LEU n 2 21 GLU n 2 22 VAL n 2 23 GLU n 2 24 PRO n 2 25 SER n 2 26 ASP n 2 27 THR n 2 28 ILE n 2 29 GLU n 2 30 ASN n 2 31 VAL n 2 32 LYS n 2 33 ALA n 2 34 LYS n 2 35 ILE n 2 36 GLN n 2 37 ASP n 2 38 LYS n 2 39 GLU n 2 40 GLY n 2 41 ILE n 2 42 PRO n 2 43 PRO n 2 44 ASP n 2 45 GLN n 2 46 GLN n 2 47 ARG n 2 48 LEU n 2 49 ILE n 2 50 PHE n 2 51 ALA n 2 52 GLY n 2 53 LYS n 2 54 GLN n 2 55 LEU n 2 56 GLU n 2 57 ASP n 2 58 GLY n 2 59 ARG n 2 60 THR n 2 61 LEU n 2 62 SER n 2 63 ASP n 2 64 TYR n 2 65 ASN n 2 66 ILE n 2 67 GLN n 2 68 LYS n 2 69 GLU n 2 70 SER n 2 71 THR n 2 72 LEU n 2 73 HIS n 2 74 LEU n 2 75 VAL n 2 76 LEU n 2 77 ARG n 2 78 LEU n 2 79 ARG n 2 80 GLY n 2 81 GLY n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 195 ;Baker's yeast ; ? 'RPN10, MCB1, SUN1, YHR200W' ? 'ATCC 204508 / S288c' ? ? ? ? 'Saccharomyces cerevisiae (strain ATCC 204508 / S288c)' 559292 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 81 Human ? UBB ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP RPN10_YEAST P38886 ? 1 ;MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQ IEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAA VNNPQEETSHLLTVTPGPRLLYENIASSPII ; 1 2 UNP UBB_HUMAN P0CG47 ? 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 77 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5LN1 A 5 ? 195 ? P38886 1 ? 191 ? 1 191 2 2 5LN1 U 6 ? 81 ? P0CG47 77 ? 152 ? 1 76 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5LN1 GLY A 1 ? UNP P38886 ? ? 'expression tag' -3 1 1 5LN1 PRO A 2 ? UNP P38886 ? ? 'expression tag' -2 2 1 5LN1 PRO A 3 ? UNP P38886 ? ? 'expression tag' -1 3 1 5LN1 ARG A 4 ? UNP P38886 ? ? 'expression tag' 0 4 2 5LN1 GLY U 1 ? UNP P0CG47 ? ? 'expression tag' -4 5 2 5LN1 ALA U 2 ? UNP P0CG47 ? ? 'expression tag' -3 6 2 5LN1 MET U 3 ? UNP P0CG47 ? ? 'expression tag' -2 7 2 5LN1 GLY U 4 ? UNP P0CG47 ? ? 'expression tag' -1 8 2 5LN1 SER U 5 ? UNP P0CG47 ? ? 'expression tag' 0 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LN1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.69 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.30 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'EVAPORATION, RECRYSTALLIZATION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;12% (W/V) PEG 20000, 0.1M MES PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2011-11-28 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9393 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9393 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5LN1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 3.140 _reflns.d_resolution_low 61.800 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5824 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 9.800 _reflns.percent_possible_obs 99.8 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.200 _reflns.pdbx_Rmerge_I_obs 0.08400 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.09800 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 10.2 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 3.14 _reflns_shell.d_res_low 3.31 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 5.100 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 99.9 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.22500 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 3.40 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5LN1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.14 _refine.ls_d_res_low 53.64 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 5823 _refine.ls_number_reflns_R_free 571 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.7 _refine.ls_percent_reflns_R_free 4.570 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.193 _refine.ls_R_factor_R_free 0.248 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.190 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.350 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model '2X5N, 1UBQ' _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 25.210 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.240 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2069 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2069 _refine_hist.d_res_high 3.14 _refine_hist.d_res_low 53.64 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 2098 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.409 ? 2836 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 17.541 ? 796 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.101 ? 337 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.006 ? 371 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 3.1400 3.2490 . . 126 2754 100.00 . . . 0.3164 . 0.2111 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2490 53.6486 . . 140 2803 99.00 . . . 0.2099 . 0.1763 . . . . . . . . . . # _struct.entry_id 5LN1 _struct.title 'STRUCTURE OF UBIQUITYLATED-RPN10 FROM YEAST;' _struct.pdbx_descriptor '26S proteasome regulatory subunit RPN10, Polyubiquitin-B' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LN1 _struct_keywords.text 'UBIQUITIN, VWA, UBIQUITYLATION, PROTEASOME, UBIQUITIN-BINDING PROTEIN' _struct_keywords.pdbx_keywords 'UBIQUITIN-BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 17 ? ARG A 21 ? SER A 13 ARG A 17 5 ? 5 HELX_P HELX_P2 AA2 THR A 28 ? ASN A 48 ? THR A 24 ASN A 44 1 ? 21 HELX_P HELX_P3 AA3 GLU A 72 ? HIS A 81 ? GLU A 68 HIS A 77 1 ? 10 HELX_P HELX_P4 AA4 HIS A 90 ? HIS A 104 ? HIS A 86 HIS A 100 1 ? 15 HELX_P HELX_P5 AA5 SER A 125 ? ASN A 139 ? SER A 121 ASN A 135 1 ? 15 HELX_P HELX_P6 AA6 GLN A 153 ? GLN A 153 ? GLN A 149 GLN A 149 1 ? 1 HELX_P HELX_P7 AA7 LEU A 158 ? ASN A 166 ? LEU A 154 ASN A 162 1 ? 9 HELX_P HELX_P8 AA8 LEU A 184 ? SER A 192 ? LEU A 180 SER A 188 1 ? 9 HELX_P HELX_P9 AA9 THR B 27 ? GLY B 40 ? THR U 22 GLY U 35 1 ? 14 HELX_P HELX_P10 AB1 PRO B 42 ? ASP B 44 ? PRO U 37 ASP U 39 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 26 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 22 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 ARG _struct_mon_prot_cis.pdbx_label_seq_id_2 27 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 ARG _struct_mon_prot_cis.pdbx_auth_seq_id_2 23 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -2.63 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 6 ? AA2 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? parallel AA1 3 4 ? parallel AA1 4 5 ? parallel AA1 5 6 ? parallel AA2 1 2 ? anti-parallel AA2 2 3 ? parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ARG A 64 ? THR A 70 ? ARG A 60 THR A 66 AA1 2 THR A 52 ? SER A 57 ? THR A 48 SER A 53 AA1 3 GLU A 8 ? ILE A 14 ? GLU A 4 ILE A 10 AA1 4 HIS A 111 ? VAL A 118 ? HIS A 107 VAL A 114 AA1 5 VAL A 141 ? ASN A 147 ? VAL A 137 ASN A 143 AA1 6 LEU A 175 ? THR A 177 ? LEU A 171 THR A 173 AA2 1 THR B 17 ? GLU B 21 ? THR U 12 GLU U 16 AA2 2 GLN B 7 ? THR B 12 ? GLN U 2 THR U 7 AA2 3 THR B 71 ? LEU B 76 ? THR U 66 LEU U 71 AA2 4 GLN B 46 ? PHE B 50 ? GLN U 41 PHE U 45 AA2 5 LYS B 53 ? GLN B 54 ? LYS U 48 GLN U 49 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O THR A 70 ? O THR A 66 N VAL A 53 ? N VAL A 49 AA1 2 3 O GLY A 54 ? O GLY A 50 N LEU A 12 ? N LEU A 8 AA1 3 4 N VAL A 11 ? N VAL A 7 O VAL A 115 ? O VAL A 111 AA1 4 5 N ALA A 116 ? N ALA A 112 O ILE A 146 ? O ILE A 142 AA1 5 6 N ASN A 147 ? N ASN A 143 O LEU A 176 ? O LEU A 172 AA2 1 2 O ILE B 18 ? O ILE U 13 N VAL B 10 ? N VAL U 5 AA2 2 3 N PHE B 9 ? N PHE U 4 O LEU B 72 ? O LEU U 67 AA2 3 4 O HIS B 73 ? O HIS U 68 N ILE B 49 ? N ILE U 44 AA2 4 5 N PHE B 50 ? N PHE U 45 O LYS B 53 ? O LYS U 48 # _database_PDB_matrix.entry_id 5LN1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 5LN1 _atom_sites.fract_transf_matrix[1][1] 0.009321 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007975 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020121 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016182 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 PRO 2 -2 ? ? ? A . n A 1 3 PRO 3 -1 ? ? ? A . n A 1 4 ARG 4 0 ? ? ? A . n A 1 5 MET 5 1 1 MET MET A . n A 1 6 VAL 6 2 2 VAL VAL A . n A 1 7 LEU 7 3 3 LEU LEU A . n A 1 8 GLU 8 4 4 GLU GLU A . n A 1 9 ALA 9 5 5 ALA ALA A . n A 1 10 THR 10 6 6 THR THR A . n A 1 11 VAL 11 7 7 VAL VAL A . n A 1 12 LEU 12 8 8 LEU LEU A . n A 1 13 VAL 13 9 9 VAL VAL A . n A 1 14 ILE 14 10 10 ILE ILE A . n A 1 15 ASP 15 11 11 ASP ASP A . n A 1 16 ASN 16 12 12 ASN ASN A . n A 1 17 SER 17 13 13 SER SER A . n A 1 18 GLU 18 14 14 GLU GLU A . n A 1 19 TYR 19 15 15 TYR TYR A . n A 1 20 SER 20 16 16 SER SER A . n A 1 21 ARG 21 17 17 ARG ARG A . n A 1 22 ASN 22 18 18 ASN ASN A . n A 1 23 GLY 23 19 19 GLY GLY A . n A 1 24 ASP 24 20 20 ASP ASP A . n A 1 25 PHE 25 21 21 PHE PHE A . n A 1 26 PRO 26 22 22 PRO PRO A . n A 1 27 ARG 27 23 23 ARG ARG A . n A 1 28 THR 28 24 24 THR THR A . n A 1 29 ARG 29 25 25 ARG ARG A . n A 1 30 PHE 30 26 26 PHE PHE A . n A 1 31 GLU 31 27 27 GLU GLU A . n A 1 32 ALA 32 28 28 ALA ALA A . n A 1 33 GLN 33 29 29 GLN GLN A . n A 1 34 ILE 34 30 30 ILE ILE A . n A 1 35 ASP 35 31 31 ASP ASP A . n A 1 36 SER 36 32 32 SER SER A . n A 1 37 VAL 37 33 33 VAL VAL A . n A 1 38 GLU 38 34 34 GLU GLU A . n A 1 39 PHE 39 35 35 PHE PHE A . n A 1 40 ILE 40 36 36 ILE ILE A . n A 1 41 PHE 41 37 37 PHE PHE A . n A 1 42 GLN 42 38 38 GLN GLN A . n A 1 43 ALA 43 39 39 ALA ALA A . n A 1 44 LYS 44 40 40 LYS LYS A . n A 1 45 ARG 45 41 41 ARG ARG A . n A 1 46 ASN 46 42 42 ASN ASN A . n A 1 47 SER 47 43 43 SER SER A . n A 1 48 ASN 48 44 44 ASN ASN A . n A 1 49 PRO 49 45 45 PRO PRO A . n A 1 50 GLU 50 46 46 GLU GLU A . n A 1 51 ASN 51 47 47 ASN ASN A . n A 1 52 THR 52 48 48 THR THR A . n A 1 53 VAL 53 49 49 VAL VAL A . n A 1 54 GLY 54 50 50 GLY GLY A . n A 1 55 LEU 55 51 51 LEU LEU A . n A 1 56 ILE 56 52 52 ILE ILE A . n A 1 57 SER 57 53 53 SER SER A . n A 1 58 GLY 58 54 54 GLY GLY A . n A 1 59 ALA 59 55 55 ALA ALA A . n A 1 60 GLY 60 56 56 GLY GLY A . n A 1 61 ALA 61 57 57 ALA ALA A . n A 1 62 ASN 62 58 58 ASN ASN A . n A 1 63 PRO 63 59 59 PRO PRO A . n A 1 64 ARG 64 60 60 ARG ARG A . n A 1 65 VAL 65 61 61 VAL VAL A . n A 1 66 LEU 66 62 62 LEU LEU A . n A 1 67 SER 67 63 63 SER SER A . n A 1 68 THR 68 64 64 THR THR A . n A 1 69 PHE 69 65 65 PHE PHE A . n A 1 70 THR 70 66 66 THR THR A . n A 1 71 ALA 71 67 67 ALA ALA A . n A 1 72 GLU 72 68 68 GLU GLU A . n A 1 73 PHE 73 69 69 PHE PHE A . n A 1 74 GLY 74 70 70 GLY GLY A . n A 1 75 LYS 75 71 71 LYS LYS A . n A 1 76 ILE 76 72 72 ILE ILE A . n A 1 77 LEU 77 73 73 LEU LEU A . n A 1 78 ALA 78 74 74 ALA ALA A . n A 1 79 GLY 79 75 75 GLY GLY A . n A 1 80 LEU 80 76 76 LEU LEU A . n A 1 81 HIS 81 77 77 HIS HIS A . n A 1 82 ASP 82 78 78 ASP ASP A . n A 1 83 THR 83 79 79 THR THR A . n A 1 84 GLN 84 80 80 GLN GLN A . n A 1 85 ILE 85 81 81 ILE ILE A . n A 1 86 GLU 86 82 82 GLU GLU A . n A 1 87 GLY 87 83 83 GLY GLY A . n A 1 88 LYS 88 84 84 LYS LYS A . n A 1 89 LEU 89 85 85 LEU LEU A . n A 1 90 HIS 90 86 86 HIS HIS A . n A 1 91 MET 91 87 87 MET MET A . n A 1 92 ALA 92 88 88 ALA ALA A . n A 1 93 THR 93 89 89 THR THR A . n A 1 94 ALA 94 90 90 ALA ALA A . n A 1 95 LEU 95 91 91 LEU LEU A . n A 1 96 GLN 96 92 92 GLN GLN A . n A 1 97 ILE 97 93 93 ILE ILE A . n A 1 98 ALA 98 94 94 ALA ALA A . n A 1 99 GLN 99 95 95 GLN GLN A . n A 1 100 LEU 100 96 96 LEU LEU A . n A 1 101 THR 101 97 97 THR THR A . n A 1 102 LEU 102 98 98 LEU LEU A . n A 1 103 LYS 103 99 99 LYS LYS A . n A 1 104 HIS 104 100 100 HIS HIS A . n A 1 105 ARG 105 101 101 ARG ARG A . n A 1 106 GLN 106 102 102 GLN GLN A . n A 1 107 ASN 107 103 103 ASN ASN A . n A 1 108 LYS 108 104 104 LYS LYS A . n A 1 109 VAL 109 105 105 VAL VAL A . n A 1 110 GLN 110 106 106 GLN GLN A . n A 1 111 HIS 111 107 107 HIS HIS A . n A 1 112 GLN 112 108 108 GLN GLN A . n A 1 113 ARG 113 109 109 ARG ARG A . n A 1 114 ILE 114 110 110 ILE ILE A . n A 1 115 VAL 115 111 111 VAL VAL A . n A 1 116 ALA 116 112 112 ALA ALA A . n A 1 117 PHE 117 113 113 PHE PHE A . n A 1 118 VAL 118 114 114 VAL VAL A . n A 1 119 CYS 119 115 115 CYS CYS A . n A 1 120 SER 120 116 116 SER SER A . n A 1 121 PRO 121 117 117 PRO PRO A . n A 1 122 ILE 122 118 118 ILE ILE A . n A 1 123 SER 123 119 119 SER SER A . n A 1 124 ASP 124 120 120 ASP ASP A . n A 1 125 SER 125 121 121 SER SER A . n A 1 126 ARG 126 122 122 ARG ARG A . n A 1 127 ASP 127 123 123 ASP ASP A . n A 1 128 GLU 128 124 124 GLU GLU A . n A 1 129 LEU 129 125 125 LEU LEU A . n A 1 130 ILE 130 126 126 ILE ILE A . n A 1 131 ARG 131 127 127 ARG ARG A . n A 1 132 LEU 132 128 128 LEU LEU A . n A 1 133 ALA 133 129 129 ALA ALA A . n A 1 134 LYS 134 130 130 LYS LYS A . n A 1 135 THR 135 131 131 THR THR A . n A 1 136 LEU 136 132 132 LEU LEU A . n A 1 137 LYS 137 133 133 LYS LYS A . n A 1 138 LYS 138 134 134 LYS LYS A . n A 1 139 ASN 139 135 135 ASN ASN A . n A 1 140 ASN 140 136 136 ASN ASN A . n A 1 141 VAL 141 137 137 VAL VAL A . n A 1 142 ALA 142 138 138 ALA ALA A . n A 1 143 VAL 143 139 139 VAL VAL A . n A 1 144 ASP 144 140 140 ASP ASP A . n A 1 145 ILE 145 141 141 ILE ILE A . n A 1 146 ILE 146 142 142 ILE ILE A . n A 1 147 ASN 147 143 143 ASN ASN A . n A 1 148 PHE 148 144 144 PHE PHE A . n A 1 149 GLY 149 145 145 GLY GLY A . n A 1 150 GLU 150 146 146 GLU GLU A . n A 1 151 ILE 151 147 147 ILE ILE A . n A 1 152 GLU 152 148 148 GLU GLU A . n A 1 153 GLN 153 149 149 GLN GLN A . n A 1 154 ASN 154 150 ? ? ? A . n A 1 155 THR 155 151 ? ? ? A . n A 1 156 GLU 156 152 ? ? ? A . n A 1 157 LEU 157 153 153 LEU LEU A . n A 1 158 LEU 158 154 154 LEU LEU A . n A 1 159 ASP 159 155 155 ASP ASP A . n A 1 160 GLU 160 156 156 GLU GLU A . n A 1 161 PHE 161 157 157 PHE PHE A . n A 1 162 ILE 162 158 158 ILE ILE A . n A 1 163 ALA 163 159 159 ALA ALA A . n A 1 164 ALA 164 160 160 ALA ALA A . n A 1 165 VAL 165 161 161 VAL VAL A . n A 1 166 ASN 166 162 162 ASN ASN A . n A 1 167 ASN 167 163 163 ASN ASN A . n A 1 168 PRO 168 164 164 PRO PRO A . n A 1 169 GLN 169 165 165 GLN GLN A . n A 1 170 GLU 170 166 166 GLU GLU A . n A 1 171 GLU 171 167 167 GLU GLU A . n A 1 172 THR 172 168 168 THR THR A . n A 1 173 SER 173 169 169 SER SER A . n A 1 174 HIS 174 170 170 HIS HIS A . n A 1 175 LEU 175 171 171 LEU LEU A . n A 1 176 LEU 176 172 172 LEU LEU A . n A 1 177 THR 177 173 173 THR THR A . n A 1 178 VAL 178 174 174 VAL VAL A . n A 1 179 THR 179 175 175 THR THR A . n A 1 180 PRO 180 176 176 PRO PRO A . n A 1 181 GLY 181 177 177 GLY GLY A . n A 1 182 PRO 182 178 178 PRO PRO A . n A 1 183 ARG 183 179 179 ARG ARG A . n A 1 184 LEU 184 180 180 LEU LEU A . n A 1 185 LEU 185 181 181 LEU LEU A . n A 1 186 TYR 186 182 182 TYR TYR A . n A 1 187 GLU 187 183 183 GLU GLU A . n A 1 188 ASN 188 184 184 ASN ASN A . n A 1 189 ILE 189 185 185 ILE ILE A . n A 1 190 ALA 190 186 186 ALA ALA A . n A 1 191 SER 191 187 187 SER SER A . n A 1 192 SER 192 188 188 SER SER A . n A 1 193 PRO 193 189 189 PRO PRO A . n A 1 194 ILE 194 190 190 ILE ILE A . n A 1 195 ILE 195 191 191 ILE ILE A . n B 2 1 GLY 1 -4 ? ? ? U . n B 2 2 ALA 2 -3 ? ? ? U . n B 2 3 MET 3 -2 ? ? ? U . n B 2 4 GLY 4 -1 ? ? ? U . n B 2 5 SER 5 0 ? ? ? U . n B 2 6 MET 6 1 1 MET MET U . n B 2 7 GLN 7 2 2 GLN GLN U . n B 2 8 ILE 8 3 3 ILE ILE U . n B 2 9 PHE 9 4 4 PHE PHE U . n B 2 10 VAL 10 5 5 VAL VAL U . n B 2 11 LYS 11 6 6 LYS LYS U . n B 2 12 THR 12 7 7 THR THR U . n B 2 13 LEU 13 8 8 LEU LEU U . n B 2 14 THR 14 9 9 THR THR U . n B 2 15 GLY 15 10 10 GLY GLY U . n B 2 16 LYS 16 11 11 LYS LYS U . n B 2 17 THR 17 12 12 THR THR U . n B 2 18 ILE 18 13 13 ILE ILE U . n B 2 19 THR 19 14 14 THR THR U . n B 2 20 LEU 20 15 15 LEU LEU U . n B 2 21 GLU 21 16 16 GLU GLU U . n B 2 22 VAL 22 17 17 VAL VAL U . n B 2 23 GLU 23 18 18 GLU GLU U . n B 2 24 PRO 24 19 19 PRO PRO U . n B 2 25 SER 25 20 20 SER SER U . n B 2 26 ASP 26 21 21 ASP ASP U . n B 2 27 THR 27 22 22 THR THR U . n B 2 28 ILE 28 23 23 ILE ILE U . n B 2 29 GLU 29 24 24 GLU GLU U . n B 2 30 ASN 30 25 25 ASN ASN U . n B 2 31 VAL 31 26 26 VAL VAL U . n B 2 32 LYS 32 27 27 LYS LYS U . n B 2 33 ALA 33 28 28 ALA ALA U . n B 2 34 LYS 34 29 29 LYS LYS U . n B 2 35 ILE 35 30 30 ILE ILE U . n B 2 36 GLN 36 31 31 GLN GLN U . n B 2 37 ASP 37 32 32 ASP ASP U . n B 2 38 LYS 38 33 33 LYS LYS U . n B 2 39 GLU 39 34 34 GLU GLU U . n B 2 40 GLY 40 35 35 GLY GLY U . n B 2 41 ILE 41 36 36 ILE ILE U . n B 2 42 PRO 42 37 37 PRO PRO U . n B 2 43 PRO 43 38 38 PRO PRO U . n B 2 44 ASP 44 39 39 ASP ASP U . n B 2 45 GLN 45 40 40 GLN GLN U . n B 2 46 GLN 46 41 41 GLN GLN U . n B 2 47 ARG 47 42 42 ARG ARG U . n B 2 48 LEU 48 43 43 LEU LEU U . n B 2 49 ILE 49 44 44 ILE ILE U . n B 2 50 PHE 50 45 45 PHE PHE U . n B 2 51 ALA 51 46 46 ALA ALA U . n B 2 52 GLY 52 47 47 GLY GLY U . n B 2 53 LYS 53 48 48 LYS LYS U . n B 2 54 GLN 54 49 49 GLN GLN U . n B 2 55 LEU 55 50 50 LEU LEU U . n B 2 56 GLU 56 51 51 GLU GLU U . n B 2 57 ASP 57 52 52 ASP ASP U . n B 2 58 GLY 58 53 53 GLY GLY U . n B 2 59 ARG 59 54 54 ARG ARG U . n B 2 60 THR 60 55 55 THR THR U . n B 2 61 LEU 61 56 56 LEU LEU U . n B 2 62 SER 62 57 57 SER SER U . n B 2 63 ASP 63 58 58 ASP ASP U . n B 2 64 TYR 64 59 59 TYR TYR U . n B 2 65 ASN 65 60 60 ASN ASN U . n B 2 66 ILE 66 61 61 ILE ILE U . n B 2 67 GLN 67 62 62 GLN GLN U . n B 2 68 LYS 68 63 63 LYS LYS U . n B 2 69 GLU 69 64 64 GLU GLU U . n B 2 70 SER 70 65 65 SER SER U . n B 2 71 THR 71 66 66 THR THR U . n B 2 72 LEU 72 67 67 LEU LEU U . n B 2 73 HIS 73 68 68 HIS HIS U . n B 2 74 LEU 74 69 69 LEU LEU U . n B 2 75 VAL 75 70 70 VAL VAL U . n B 2 76 LEU 76 71 71 LEU LEU U . n B 2 77 ARG 77 72 72 ARG ARG U . n B 2 78 LEU 78 73 73 LEU LEU U . n B 2 79 ARG 79 74 74 ARG ARG U . n B 2 80 GLY 80 75 75 GLY GLY U . n B 2 81 GLY 81 76 76 GLY GLY U . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 820 ? 1 MORE 0.0 ? 1 'SSA (A^2)' 12790 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 -52.8735585632 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 61.7976998347 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-10-19 2 'Structure model' 1 1 2019-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Data collection' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' diffrn_radiation_wavelength 2 2 'Structure model' pdbx_validate_close_contact 3 2 'Structure model' struct_conn 4 2 'Structure model' struct_conn_type # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.8_1069 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? MOSFLM ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? SCALA ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NZ A LYS 84 ? ? C U GLY 76 ? ? 1.33 2 1 O A GLN 149 ? ? N A LEU 153 ? ? 2.06 3 1 OE2 A GLU 4 ? ? NZ A LYS 40 ? ? 2.18 4 1 OD1 A ASP 11 ? ? OG A SER 13 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 44 ? ? -175.83 131.06 2 1 ALA A 57 ? ? 156.78 3.82 3 1 ASN A 58 ? ? 158.09 104.93 4 1 ASP A 78 ? ? 100.26 -3.83 5 1 ASN A 103 ? ? 61.73 73.86 6 1 ARG U 74 ? ? -93.02 -80.63 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A PRO -2 ? A PRO 2 3 1 Y 1 A PRO -1 ? A PRO 3 4 1 Y 1 A ARG 0 ? A ARG 4 5 1 Y 1 A ASN 150 ? A ASN 154 6 1 Y 1 A THR 151 ? A THR 155 7 1 Y 1 A GLU 152 ? A GLU 156 8 1 Y 1 U GLY -4 ? B GLY 1 9 1 Y 1 U ALA -3 ? B ALA 2 10 1 Y 1 U MET -2 ? B MET 3 11 1 Y 1 U GLY -1 ? B GLY 4 12 1 Y 1 U SER 0 ? B SER 5 # _pdbx_audit_support.funding_organization ISF _pdbx_audit_support.country Israel _pdbx_audit_support.grant_number 1695/08 _pdbx_audit_support.ordinal 1 #