HEADER HYDROLASE 03-AUG-16 5LN5 TITLE CRYSTAL STRUCTURE OF THE WSS1 E203Q MUTANT FROM S. POMBE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN AND WLM DOMAIN-CONTAINING METALLOPROTEASE COMPND 3 SPCC1442.07C; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: UNP RESIDUES 107-233; COMPND 6 SYNONYM: DNA-DEPENDENT METALLOPROTEASE SPRTN; COMPND 7 EC: 3.4.24.-; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: USED CONSTRUCT WAS A TRUNCATION AND E203Q MUTANT OF COMPND 11 SPCC1442.07C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE; SOURCE 3 ORGANISM_COMMON: FISSION YEAST; SOURCE 4 ORGANISM_TAXID: 284812; SOURCE 5 GENE: SPCC1442.07C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PRSETA KEYWDS METALLOPROTEASE, DNA-REPAIR, ENDOPROTEASE, REGULATION, MUTANT, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GROLL,J.STINGELE,S.J.BOULTON REVDAT 3 10-JAN-24 5LN5 1 LINK REVDAT 2 07-DEC-16 5LN5 1 JRNL REVDAT 1 09-NOV-16 5LN5 0 JRNL AUTH J.STINGELE,R.BELLELLI,F.ALTE,G.HEWITT,G.SAREK,S.L.MASLEN, JRNL AUTH 2 S.E.TSUTAKAWA,A.BORG,S.KJR,J.A.TAINER,J.M.SKEHEL,M.GROLL, JRNL AUTH 3 S.J.BOULTON JRNL TITL MECHANISM AND REGULATION OF DNA-PROTEIN CROSSLINK REPAIR BY JRNL TITL 2 THE DNA-DEPENDENT METALLOPROTEASE SPRTN. JRNL REF MOL.CELL V. 64 688 2016 JRNL REFN ISSN 1097-2765 JRNL PMID 27871365 JRNL DOI 10.1016/J.MOLCEL.2016.09.031 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 19928 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1049 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1427 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1893 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.09000 REMARK 3 B22 (A**2) : 1.38000 REMARK 3 B33 (A**2) : 0.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.356 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.116 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.900 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1940 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1829 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2618 ; 0.965 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4187 ; 0.700 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 221 ; 4.914 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;35.428 ;22.642 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 346 ;13.012 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;14.076 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 283 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2149 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 491 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 896 ; 2.249 ; 2.808 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 895 ; 2.239 ; 2.806 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1113 ; 2.529 ; 4.196 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1114 ; 2.528 ; 4.198 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1044 ; 2.396 ; 3.482 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1042 ; 2.383 ; 3.478 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1503 ; 2.460 ; 4.990 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2263 ; 3.597 ;24.694 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2220 ; 3.286 ;24.299 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3769 ; 1.242 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 54 ;24.799 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3815 ; 6.911 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 122 REMARK 3 ORIGIN FOR THE GROUP (A): -1.0286 -7.8484 6.9087 REMARK 3 T TENSOR REMARK 3 T11: 0.0187 T22: 0.0622 REMARK 3 T33: 0.0268 T12: 0.0052 REMARK 3 T13: -0.0128 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 2.3132 L22: 0.1324 REMARK 3 L33: 0.7016 L12: -0.5140 REMARK 3 L13: -0.1024 L23: -0.0549 REMARK 3 S TENSOR REMARK 3 S11: 0.1001 S12: 0.2142 S13: -0.1372 REMARK 3 S21: -0.0257 S22: -0.0832 S23: 0.0390 REMARK 3 S31: 0.0288 S32: 0.0198 S33: -0.0169 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 122 REMARK 3 ORIGIN FOR THE GROUP (A): -5.3791 -7.9675 -19.8069 REMARK 3 T TENSOR REMARK 3 T11: 0.0292 T22: 0.0440 REMARK 3 T33: 0.0128 T12: -0.0123 REMARK 3 T13: -0.0029 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.5230 L22: 0.1316 REMARK 3 L33: 0.6527 L12: -0.0383 REMARK 3 L13: -0.4669 L23: 0.1563 REMARK 3 S TENSOR REMARK 3 S11: 0.0827 S12: -0.1403 S13: 0.0281 REMARK 3 S21: 0.0096 S22: -0.0580 S23: 0.0031 REMARK 3 S31: -0.0202 S32: 0.0143 S33: -0.0247 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LN5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200001025. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20977 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.43100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JIG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS/HCL, 20% PEG 1000, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.63000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLU A 54 REMARK 465 HIS A 55 REMARK 465 THR A 56 REMARK 465 ARG A 57 REMARK 465 HIS A 58 REMARK 465 ASP A 59 REMARK 465 SER A 60 REMARK 465 LYS A 61 REMARK 465 ASP A 123 REMARK 465 ALA A 124 REMARK 465 ALA A 125 REMARK 465 ASP A 126 REMARK 465 LEU A 127 REMARK 465 LEU A 128 REMARK 465 GLY B 1 REMARK 465 ALA B 53 REMARK 465 GLU B 54 REMARK 465 HIS B 55 REMARK 465 THR B 56 REMARK 465 ARG B 57 REMARK 465 HIS B 58 REMARK 465 ASP B 59 REMARK 465 SER B 60 REMARK 465 LYS B 61 REMARK 465 ASP B 123 REMARK 465 ALA B 124 REMARK 465 ALA B 125 REMARK 465 ASP B 126 REMARK 465 LEU B 127 REMARK 465 LEU B 128 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 82 -82.70 -110.02 REMARK 500 TYR B 82 -83.91 -103.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 97 NE2 REMARK 620 2 HIS A 101 NE2 100.9 REMARK 620 3 HIS A 107 NE2 88.5 97.4 REMARK 620 4 CO3 A 202 O1 113.9 138.3 105.5 REMARK 620 5 CO3 A 202 O2 111.1 99.7 150.9 47.4 REMARK 620 6 CO3 A 202 O3 159.4 90.6 107.2 49.7 49.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 97 NE2 REMARK 620 2 HIS B 101 NE2 96.3 REMARK 620 3 HIS B 107 NE2 97.7 95.4 REMARK 620 4 HOH B 311 O 94.0 93.5 164.4 REMARK 620 5 HOH B 334 O 174.7 88.5 83.9 83.5 REMARK 620 6 HOH B 358 O 94.4 166.1 91.9 77.0 80.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO3 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 201 DBREF 5LN5 A 2 128 UNP O94580 YQ77_SCHPO 107 233 DBREF 5LN5 B 2 128 UNP O94580 YQ77_SCHPO 107 233 SEQADV 5LN5 GLY A 1 UNP O94580 EXPRESSION TAG SEQADV 5LN5 GLN A 98 UNP O94580 GLU 203 ENGINEERED MUTATION SEQADV 5LN5 GLY B 1 UNP O94580 EXPRESSION TAG SEQADV 5LN5 GLN B 98 UNP O94580 GLU 203 ENGINEERED MUTATION SEQRES 1 A 128 GLY SER ILE TYR THR PHE ASN GLU LEU VAL VAL LEU ASP SEQRES 2 A 128 TYR PRO HIS LYS ASP ARG ALA LEU ARG TYR LEU GLU ARG SEQRES 3 A 128 LEU ARG ASP ASP THR GLY ILE LYS LYS ILE MET ASP SER SEQRES 4 A 128 HIS ARG TRP THR VAL PRO LEU LEU SER GLU MET ASP PRO SEQRES 5 A 128 ALA GLU HIS THR ARG HIS ASP SER LYS THR LEU GLY LEU SEQRES 6 A 128 ASN HIS ASN GLN GLY ALA HIS ILE GLU LEU ARG LEU ARG SEQRES 7 A 128 THR ASP ARG TYR ASP GLY PHE ARG ASP TYR LYS THR VAL SEQRES 8 A 128 LYS SER THR LEU ILE HIS GLN LEU THR HIS ASN VAL HIS SEQRES 9 A 128 GLY GLU HIS ASP SER SER PHE TRP GLU LEU PHE ARG GLN SEQRES 10 A 128 LEU THR LYS GLU ALA ASP ALA ALA ASP LEU LEU SEQRES 1 B 128 GLY SER ILE TYR THR PHE ASN GLU LEU VAL VAL LEU ASP SEQRES 2 B 128 TYR PRO HIS LYS ASP ARG ALA LEU ARG TYR LEU GLU ARG SEQRES 3 B 128 LEU ARG ASP ASP THR GLY ILE LYS LYS ILE MET ASP SER SEQRES 4 B 128 HIS ARG TRP THR VAL PRO LEU LEU SER GLU MET ASP PRO SEQRES 5 B 128 ALA GLU HIS THR ARG HIS ASP SER LYS THR LEU GLY LEU SEQRES 6 B 128 ASN HIS ASN GLN GLY ALA HIS ILE GLU LEU ARG LEU ARG SEQRES 7 B 128 THR ASP ARG TYR ASP GLY PHE ARG ASP TYR LYS THR VAL SEQRES 8 B 128 LYS SER THR LEU ILE HIS GLN LEU THR HIS ASN VAL HIS SEQRES 9 B 128 GLY GLU HIS ASP SER SER PHE TRP GLU LEU PHE ARG GLN SEQRES 10 B 128 LEU THR LYS GLU ALA ASP ALA ALA ASP LEU LEU HET NI A 201 1 HET CO3 A 202 4 HET NI B 201 1 HETNAM NI NICKEL (II) ION HETNAM CO3 CARBONATE ION FORMUL 3 NI 2(NI 2+) FORMUL 4 CO3 C O3 2- FORMUL 6 HOH *141(H2 O) HELIX 1 AA1 HIS A 16 ASP A 30 1 15 HELIX 2 AA2 ASP A 30 ARG A 41 1 12 HELIX 3 AA3 ASP A 87 HIS A 101 1 15 HELIX 4 AA4 ASP A 108 ALA A 122 1 15 HELIX 5 AA5 HIS B 16 ASP B 30 1 15 HELIX 6 AA6 ASP B 30 HIS B 40 1 11 HELIX 7 AA7 ASP B 87 HIS B 101 1 15 HELIX 8 AA8 ASP B 108 ALA B 122 1 15 SHEET 1 AA1 4 PHE A 6 VAL A 10 0 SHEET 2 AA1 4 VAL A 44 MET A 50 1 O LEU A 47 N GLU A 8 SHEET 3 AA1 4 HIS A 72 ARG A 76 1 O LEU A 75 N MET A 50 SHEET 4 AA1 4 GLY A 64 HIS A 67 -1 N HIS A 67 O HIS A 72 SHEET 1 AA2 4 PHE B 6 VAL B 10 0 SHEET 2 AA2 4 VAL B 44 GLU B 49 1 O LEU B 47 N GLU B 8 SHEET 3 AA2 4 HIS B 72 LEU B 75 1 O ILE B 73 N SER B 48 SHEET 4 AA2 4 GLY B 64 HIS B 67 -1 N HIS B 67 O HIS B 72 LINK NE2 HIS A 97 NI NI A 201 1555 1555 2.21 LINK NE2 HIS A 101 NI NI A 201 1555 1555 2.17 LINK NE2 HIS A 107 NI NI A 201 1555 1555 2.25 LINK NI NI A 201 O1 CO3 A 202 1555 1555 2.62 LINK NI NI A 201 O2 CO3 A 202 1555 1555 2.65 LINK NI NI A 201 O3 CO3 A 202 1555 1555 2.39 LINK NE2 HIS B 97 NI NI B 201 1555 1555 2.14 LINK NE2 HIS B 101 NI NI B 201 1555 1555 2.16 LINK NE2 HIS B 107 NI NI B 201 1555 1555 2.25 LINK NI NI B 201 O HOH B 311 1555 1555 2.27 LINK NI NI B 201 O HOH B 334 1555 1555 2.11 LINK NI NI B 201 O HOH B 358 1555 1555 2.24 SITE 1 AC1 4 HIS A 97 HIS A 101 HIS A 107 CO3 A 202 SITE 1 AC2 5 GLY A 64 GLN A 98 HIS A 101 HIS A 107 SITE 2 AC2 5 NI A 201 SITE 1 AC3 6 HIS B 97 HIS B 101 HIS B 107 HOH B 311 SITE 2 AC3 6 HOH B 334 HOH B 358 CRYST1 41.160 57.260 50.640 90.00 113.01 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024295 0.000000 0.010317 0.00000 SCALE2 0.000000 0.017464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021454 0.00000