data_5LNF # _entry.id 5LNF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.314 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5LNF WWPDB D_1200000358 BMRB 34030 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution NMR structure of farnesylated PEX19, C-terminal domain' _pdbx_database_related.db_id 34030 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5LNF _pdbx_database_status.recvd_initial_deposition_date 2016-08-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Emmanouilidis, L.' 1 ? 'Schuetz, U.' 2 ? 'Tripsianes, K.' 3 ? 'Madl, T.' 4 ? 'Radke, J.' 5 ? 'Rucktaeschel, R.' 6 ? 'Wilmanns, M.' 7 ? 'Schliebs, W.' 8 ? 'Erdmann, R.' 9 ? 'Sattler, M.' 10 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 8 _citation.language ? _citation.page_first 14635 _citation.page_last 14635 _citation.title 'Allosteric modulation of peroxisomal membrane protein recognition by farnesylation of the peroxisomal import receptor PEX19.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/ncomms14635 _citation.pdbx_database_id_PubMed 28281558 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Emmanouilidis, L.' 1 ? primary 'Schutz, U.' 2 ? primary 'Tripsianes, K.' 3 ? primary 'Madl, T.' 4 ? primary 'Radke, J.' 5 ? primary 'Rucktaschel, R.' 6 ? primary 'Wilmanns, M.' 7 ? primary 'Schliebs, W.' 8 ? primary 'Erdmann, R.' 9 ? primary 'Sattler, M.' 10 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peroxisomal biogenesis factor 19' 15664.643 1 ? ? 'UNP residues 161-299' ? 2 non-polymer syn FARNESYL 206.367 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '33 kDa housekeeping protein,Peroxin-19,Peroxisomal farnesylated protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GMDEGDGEGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDS ETTQKARFEMVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGPPGASGEQCLIM ; _entity_poly.pdbx_seq_one_letter_code_can ;GMDEGDGEGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDS ETTQKARFEMVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGPPGASGEQCLIM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MET n 1 3 ASP n 1 4 GLU n 1 5 GLY n 1 6 ASP n 1 7 GLY n 1 8 GLU n 1 9 GLY n 1 10 ASN n 1 11 ILE n 1 12 LEU n 1 13 PRO n 1 14 ILE n 1 15 MET n 1 16 GLN n 1 17 SER n 1 18 ILE n 1 19 MET n 1 20 GLN n 1 21 ASN n 1 22 LEU n 1 23 LEU n 1 24 SER n 1 25 LYS n 1 26 ASP n 1 27 VAL n 1 28 LEU n 1 29 TYR n 1 30 PRO n 1 31 SER n 1 32 LEU n 1 33 LYS n 1 34 GLU n 1 35 ILE n 1 36 THR n 1 37 GLU n 1 38 LYS n 1 39 TYR n 1 40 PRO n 1 41 GLU n 1 42 TRP n 1 43 LEU n 1 44 GLN n 1 45 SER n 1 46 HIS n 1 47 ARG n 1 48 GLU n 1 49 SER n 1 50 LEU n 1 51 PRO n 1 52 PRO n 1 53 GLU n 1 54 GLN n 1 55 PHE n 1 56 GLU n 1 57 LYS n 1 58 TYR n 1 59 GLN n 1 60 GLU n 1 61 GLN n 1 62 HIS n 1 63 SER n 1 64 VAL n 1 65 MET n 1 66 CYS n 1 67 LYS n 1 68 ILE n 1 69 CYS n 1 70 GLU n 1 71 GLN n 1 72 PHE n 1 73 GLU n 1 74 ALA n 1 75 GLU n 1 76 THR n 1 77 PRO n 1 78 THR n 1 79 ASP n 1 80 SER n 1 81 GLU n 1 82 THR n 1 83 THR n 1 84 GLN n 1 85 LYS n 1 86 ALA n 1 87 ARG n 1 88 PHE n 1 89 GLU n 1 90 MET n 1 91 VAL n 1 92 LEU n 1 93 ASP n 1 94 LEU n 1 95 MET n 1 96 GLN n 1 97 GLN n 1 98 LEU n 1 99 GLN n 1 100 ASP n 1 101 LEU n 1 102 GLY n 1 103 HIS n 1 104 PRO n 1 105 PRO n 1 106 LYS n 1 107 GLU n 1 108 LEU n 1 109 ALA n 1 110 GLY n 1 111 GLU n 1 112 MET n 1 113 PRO n 1 114 PRO n 1 115 GLY n 1 116 LEU n 1 117 ASN n 1 118 PHE n 1 119 ASP n 1 120 LEU n 1 121 ASP n 1 122 ALA n 1 123 LEU n 1 124 ASN n 1 125 LEU n 1 126 SER n 1 127 GLY n 1 128 PRO n 1 129 PRO n 1 130 GLY n 1 131 ALA n 1 132 SER n 1 133 GLY n 1 134 GLU n 1 135 GLN n 1 136 CYS n 1 137 LEU n 1 138 ILE n 1 139 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 139 _entity_src_gen.gene_src_common_name Human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'PEX19, HK33, PXF, OK/SW-cl.22' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PEX19_HUMAN _struct_ref.pdbx_db_accession P40855 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GMDEGDGEGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDS ETTQKARFEMVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGPPGASGEQCLIM ; _struct_ref.pdbx_align_begin 161 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5LNF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 139 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P40855 _struct_ref_seq.db_align_beg 161 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 299 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 161 _struct_ref_seq.pdbx_auth_seq_align_end 299 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FAR non-polymer . FARNESYL ? 'C15 H26' 206.367 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '3D HNCA' 1 isotropic 2 1 1 '3D HNCACB' 1 isotropic 3 1 1 '3D CBCA(CO)NH' 1 isotropic 4 1 1 '3D HCCH-TOCSY' 1 isotropic 5 1 1 '3D 1H-13C NOESY' 2 isotropic 6 1 1 '3D 1H-15N NOESY' 2 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength 50 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 'NMR buffer' _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '1 mM {U-1H,13C,15N; farnesyl-[1H,12C]} PEX19, 90% H2O/10% D2O' '90% H2O/10% D2O' 'doubly labeled' solution ? 2 '1 mM {U-2H,12C,15N; Leu-[1H,13C,15N]; farnesyl-[1H,12C]} PEX19, 90% H2O/10% D2O' '90% H2O/10% D2O' 'Leucine labeled' solution ? 3 '1 mM {U-2H,12C,15N; Lle-[1H,13C,15N]; farnesyl-[1H,12C]} PEX19, 90% H2O/10% D2O' '90% H2O/10% D2O' 'Isoleucine labeled' solution ? 4 '1 mM {U-2H,12C,15N; Met-[1H,13CH3,15N]; farnesyl-[1H,12C]} PEX19, 90% H2O/10% D2O' '90% H2O/10% D2O' 'Methionine labeled' solution ? 5 '1 mM {U-2H,12C,15N; Ile(delta1),Leu(delta),Val(gamma)-[13CH3]; farnesyl-[1H,12C]} PEX19, 90% H2O/10% D2O' '90% H2O/10% D2O' 'ILV methyl labeled' solution ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III' ? Bruker 750 ? 2 AVANCE ? Bruker 900 ? # _pdbx_nmr_ensemble.entry_id 5LNF _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name CNS _pdbx_nmr_software.version ? _pdbx_nmr_software.authors 'BRUNGER A. T. ET.AL.' _pdbx_nmr_software.ordinal 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LNF _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5LNF _struct.title 'Solution NMR structure of farnesylated PEX19, C-terminal domain' _struct.pdbx_descriptor 'Peroxisomal biogenesis factor 19' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LNF _struct_keywords.text 'PEX19, farnesylation, post translational modification, allostery, chaperone' _struct_keywords.pdbx_keywords CHAPERONE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ILE A 11 ? LEU A 23 ? ILE A 171 LEU A 183 1 ? 13 HELX_P HELX_P2 AA2 SER A 24 ? ARG A 47 ? SER A 184 ARG A 207 1 ? 24 HELX_P HELX_P3 AA3 PRO A 51 ? ALA A 74 ? PRO A 211 ALA A 234 1 ? 24 HELX_P HELX_P4 AA4 SER A 80 ? GLY A 102 ? SER A 240 GLY A 262 1 ? 23 HELX_P HELX_P5 AA5 ASP A 119 ? ASN A 124 ? ASP A 279 ASN A 284 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag none _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 136 _struct_conn.ptnr1_label_atom_id SG _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id FAR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id C1 _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 296 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id FAR _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.791 _struct_conn.pdbx_value_order ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id FAR _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 10 _struct_site.details 'binding site for residue FAR A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 LEU A 23 ? LEU A 183 . ? 1_555 ? 2 AC1 10 LEU A 28 ? LEU A 188 . ? 1_555 ? 3 AC1 10 LEU A 32 ? LEU A 192 . ? 1_555 ? 4 AC1 10 MET A 95 ? MET A 255 . ? 1_555 ? 5 AC1 10 LEU A 98 ? LEU A 258 . ? 1_555 ? 6 AC1 10 GLN A 99 ? GLN A 259 . ? 1_555 ? 7 AC1 10 PHE A 118 ? PHE A 278 . ? 1_555 ? 8 AC1 10 LEU A 123 ? LEU A 283 . ? 1_555 ? 9 AC1 10 CYS A 136 ? CYS A 296 . ? 1_555 ? 10 AC1 10 ILE A 138 ? ILE A 298 . ? 1_555 ? # _atom_sites.entry_id 5LNF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 161 161 GLY GLY A . n A 1 2 MET 2 162 162 MET MET A . n A 1 3 ASP 3 163 163 ASP ASP A . n A 1 4 GLU 4 164 164 GLU GLU A . n A 1 5 GLY 5 165 165 GLY GLY A . n A 1 6 ASP 6 166 166 ASP ASP A . n A 1 7 GLY 7 167 167 GLY GLY A . n A 1 8 GLU 8 168 168 GLU GLU A . n A 1 9 GLY 9 169 169 GLY GLY A . n A 1 10 ASN 10 170 170 ASN ASN A . n A 1 11 ILE 11 171 171 ILE ILE A . n A 1 12 LEU 12 172 172 LEU LEU A . n A 1 13 PRO 13 173 173 PRO PRO A . n A 1 14 ILE 14 174 174 ILE ILE A . n A 1 15 MET 15 175 175 MET MET A . n A 1 16 GLN 16 176 176 GLN GLN A . n A 1 17 SER 17 177 177 SER SER A . n A 1 18 ILE 18 178 178 ILE ILE A . n A 1 19 MET 19 179 179 MET MET A . n A 1 20 GLN 20 180 180 GLN GLN A . n A 1 21 ASN 21 181 181 ASN ASN A . n A 1 22 LEU 22 182 182 LEU LEU A . n A 1 23 LEU 23 183 183 LEU LEU A . n A 1 24 SER 24 184 184 SER SER A . n A 1 25 LYS 25 185 185 LYS LYS A . n A 1 26 ASP 26 186 186 ASP ASP A . n A 1 27 VAL 27 187 187 VAL VAL A . n A 1 28 LEU 28 188 188 LEU LEU A . n A 1 29 TYR 29 189 189 TYR TYR A . n A 1 30 PRO 30 190 190 PRO PRO A . n A 1 31 SER 31 191 191 SER SER A . n A 1 32 LEU 32 192 192 LEU LEU A . n A 1 33 LYS 33 193 193 LYS LYS A . n A 1 34 GLU 34 194 194 GLU GLU A . n A 1 35 ILE 35 195 195 ILE ILE A . n A 1 36 THR 36 196 196 THR THR A . n A 1 37 GLU 37 197 197 GLU GLU A . n A 1 38 LYS 38 198 198 LYS LYS A . n A 1 39 TYR 39 199 199 TYR TYR A . n A 1 40 PRO 40 200 200 PRO PRO A . n A 1 41 GLU 41 201 201 GLU GLU A . n A 1 42 TRP 42 202 202 TRP TRP A . n A 1 43 LEU 43 203 203 LEU LEU A . n A 1 44 GLN 44 204 204 GLN GLN A . n A 1 45 SER 45 205 205 SER SER A . n A 1 46 HIS 46 206 206 HIS HIS A . n A 1 47 ARG 47 207 207 ARG ARG A . n A 1 48 GLU 48 208 208 GLU GLU A . n A 1 49 SER 49 209 209 SER SER A . n A 1 50 LEU 50 210 210 LEU LEU A . n A 1 51 PRO 51 211 211 PRO PRO A . n A 1 52 PRO 52 212 212 PRO PRO A . n A 1 53 GLU 53 213 213 GLU GLU A . n A 1 54 GLN 54 214 214 GLN GLN A . n A 1 55 PHE 55 215 215 PHE PHE A . n A 1 56 GLU 56 216 216 GLU GLU A . n A 1 57 LYS 57 217 217 LYS LYS A . n A 1 58 TYR 58 218 218 TYR TYR A . n A 1 59 GLN 59 219 219 GLN GLN A . n A 1 60 GLU 60 220 220 GLU GLU A . n A 1 61 GLN 61 221 221 GLN GLN A . n A 1 62 HIS 62 222 222 HIS HIS A . n A 1 63 SER 63 223 223 SER SER A . n A 1 64 VAL 64 224 224 VAL VAL A . n A 1 65 MET 65 225 225 MET MET A . n A 1 66 CYS 66 226 226 CYS CYS A . n A 1 67 LYS 67 227 227 LYS LYS A . n A 1 68 ILE 68 228 228 ILE ILE A . n A 1 69 CYS 69 229 229 CYS CYS A . n A 1 70 GLU 70 230 230 GLU GLU A . n A 1 71 GLN 71 231 231 GLN GLN A . n A 1 72 PHE 72 232 232 PHE PHE A . n A 1 73 GLU 73 233 233 GLU GLU A . n A 1 74 ALA 74 234 234 ALA ALA A . n A 1 75 GLU 75 235 235 GLU GLU A . n A 1 76 THR 76 236 236 THR THR A . n A 1 77 PRO 77 237 237 PRO PRO A . n A 1 78 THR 78 238 238 THR THR A . n A 1 79 ASP 79 239 239 ASP ASP A . n A 1 80 SER 80 240 240 SER SER A . n A 1 81 GLU 81 241 241 GLU GLU A . n A 1 82 THR 82 242 242 THR THR A . n A 1 83 THR 83 243 243 THR THR A . n A 1 84 GLN 84 244 244 GLN GLN A . n A 1 85 LYS 85 245 245 LYS LYS A . n A 1 86 ALA 86 246 246 ALA ALA A . n A 1 87 ARG 87 247 247 ARG ARG A . n A 1 88 PHE 88 248 248 PHE PHE A . n A 1 89 GLU 89 249 249 GLU GLU A . n A 1 90 MET 90 250 250 MET MET A . n A 1 91 VAL 91 251 251 VAL VAL A . n A 1 92 LEU 92 252 252 LEU LEU A . n A 1 93 ASP 93 253 253 ASP ASP A . n A 1 94 LEU 94 254 254 LEU LEU A . n A 1 95 MET 95 255 255 MET MET A . n A 1 96 GLN 96 256 256 GLN GLN A . n A 1 97 GLN 97 257 257 GLN GLN A . n A 1 98 LEU 98 258 258 LEU LEU A . n A 1 99 GLN 99 259 259 GLN GLN A . n A 1 100 ASP 100 260 260 ASP ASP A . n A 1 101 LEU 101 261 261 LEU LEU A . n A 1 102 GLY 102 262 262 GLY GLY A . n A 1 103 HIS 103 263 263 HIS HIS A . n A 1 104 PRO 104 264 264 PRO PRO A . n A 1 105 PRO 105 265 265 PRO PRO A . n A 1 106 LYS 106 266 266 LYS LYS A . n A 1 107 GLU 107 267 267 GLU GLU A . n A 1 108 LEU 108 268 268 LEU LEU A . n A 1 109 ALA 109 269 269 ALA ALA A . n A 1 110 GLY 110 270 270 GLY GLY A . n A 1 111 GLU 111 271 271 GLU GLU A . n A 1 112 MET 112 272 272 MET MET A . n A 1 113 PRO 113 273 273 PRO PRO A . n A 1 114 PRO 114 274 274 PRO PRO A . n A 1 115 GLY 115 275 275 GLY GLY A . n A 1 116 LEU 116 276 276 LEU LEU A . n A 1 117 ASN 117 277 277 ASN ASN A . n A 1 118 PHE 118 278 278 PHE PHE A . n A 1 119 ASP 119 279 279 ASP ASP A . n A 1 120 LEU 120 280 280 LEU LEU A . n A 1 121 ASP 121 281 281 ASP ASP A . n A 1 122 ALA 122 282 282 ALA ALA A . n A 1 123 LEU 123 283 283 LEU LEU A . n A 1 124 ASN 124 284 284 ASN ASN A . n A 1 125 LEU 125 285 285 LEU LEU A . n A 1 126 SER 126 286 286 SER SER A . n A 1 127 GLY 127 287 287 GLY GLY A . n A 1 128 PRO 128 288 288 PRO PRO A . n A 1 129 PRO 129 289 289 PRO PRO A . n A 1 130 GLY 130 290 290 GLY GLY A . n A 1 131 ALA 131 291 291 ALA ALA A . n A 1 132 SER 132 292 292 SER SER A . n A 1 133 GLY 133 293 293 GLY GLY A . n A 1 134 GLU 134 294 294 GLU GLU A . n A 1 135 GLN 135 295 295 GLN GLN A . n A 1 136 CYS 136 296 296 CYS CYS A . n A 1 137 LEU 137 297 297 LEU LEU A . n A 1 138 ILE 138 298 298 ILE ILE A . n A 1 139 MET 139 299 299 MET MET A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id FAR _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 301 _pdbx_nonpoly_scheme.auth_seq_num 1296 _pdbx_nonpoly_scheme.pdb_mon_id FAR _pdbx_nonpoly_scheme.auth_mon_id CYF _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 630 ? 1 MORE 4 ? 1 'SSA (A^2)' 9120 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-03-15 2 'Structure model' 1 1 2017-03-22 3 'Structure model' 1 2 2019-09-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category pdbx_nmr_spectrometer # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 3 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 PEX19 1 ? mM '{U-1H,13C,15N; farnesyl-[1H,12C]}' 2 PEX19 1 ? mM '{U-2H,12C,15N; Leu-[1H,13C,15N]; farnesyl-[1H,12C]}' 3 PEX19 1 ? mM '{U-2H,12C,15N; Lle-[1H,13C,15N]; farnesyl-[1H,12C]}' 4 PEX19 1 ? mM '{U-2H,12C,15N; Met-[1H,13CH3,15N]; farnesyl-[1H,12C]}' 5 PEX19 1 ? mM '{U-2H,12C,15N; Ile(delta1),Leu(delta),Val(gamma)-[13CH3]; farnesyl-[1H,12C]}' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 3 H3 A GLY 161 ? ? OE2 A GLU 164 ? ? 1.58 2 3 HZ1 A LYS 198 ? ? OE2 A GLU 271 ? ? 1.60 3 5 O A CYS 226 ? ? HG A CYS 229 ? ? 1.57 4 14 OD2 A ASP 239 ? ? HE21 A GLN 244 ? ? 1.55 5 14 HZ3 A LYS 193 ? ? OE1 A GLU 233 ? ? 1.58 6 17 HZ1 A LYS 185 ? ? OE2 A GLU 235 ? ? 1.60 7 19 HZ1 A LYS 185 ? ? OE2 A GLU 235 ? ? 1.58 8 20 O A CYS 226 ? ? HG A CYS 229 ? ? 1.58 9 20 HZ2 A LYS 245 ? ? OE2 A GLU 249 ? ? 1.60 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 296 ? ? -103.97 -72.35 2 1 ILE A 298 ? ? -81.72 -77.26 3 2 ALA A 291 ? ? 63.06 80.83 4 2 SER A 292 ? ? -145.51 16.46 5 2 GLN A 295 ? ? -122.49 -147.34 6 2 CYS A 296 ? ? -120.61 -70.32 7 2 ILE A 298 ? ? -76.75 -78.98 8 3 ASP A 163 ? ? 56.74 86.92 9 3 ASN A 170 ? ? -116.73 73.26 10 3 PRO A 274 ? ? -55.11 102.80 11 3 LEU A 276 ? ? -77.24 21.80 12 3 GLN A 295 ? ? -110.57 -144.37 13 3 CYS A 296 ? ? -111.42 -70.60 14 3 ILE A 298 ? ? -85.56 -73.35 15 4 PRO A 274 ? ? -58.47 102.38 16 4 LEU A 276 ? ? -80.74 30.59 17 4 GLU A 294 ? ? -56.02 102.56 18 4 CYS A 296 ? ? -105.26 -72.94 19 4 ILE A 298 ? ? -81.28 -82.25 20 5 PRO A 274 ? ? -49.58 108.66 21 5 ALA A 291 ? ? 63.35 93.41 22 5 SER A 292 ? ? -176.15 27.60 23 5 CYS A 296 ? ? -101.51 -71.47 24 5 ILE A 298 ? ? -79.91 -81.37 25 6 GLU A 164 ? ? -92.32 42.14 26 6 LEU A 276 ? ? -80.34 30.49 27 6 GLN A 295 ? ? -122.09 -164.79 28 6 CYS A 296 ? ? -110.15 -72.59 29 6 ILE A 298 ? ? -84.12 -73.77 30 7 GLU A 164 ? ? 61.48 85.34 31 7 GLU A 294 ? ? -64.56 97.46 32 7 CYS A 296 ? ? -107.31 -72.15 33 7 ILE A 298 ? ? -91.05 -74.11 34 8 PRO A 274 ? ? -56.60 105.25 35 8 SER A 286 ? ? -88.93 48.19 36 8 PRO A 289 ? ? -74.83 25.61 37 8 SER A 292 ? ? -148.59 18.64 38 8 CYS A 296 ? ? -115.97 -70.30 39 8 ILE A 298 ? ? -81.56 -74.18 40 9 PRO A 274 ? ? -50.18 109.41 41 9 LEU A 276 ? ? -78.29 32.48 42 9 GLN A 295 ? ? -125.29 -160.90 43 9 CYS A 296 ? ? -113.47 -72.85 44 9 ILE A 298 ? ? -74.53 -78.01 45 10 MET A 162 ? ? 65.54 -166.66 46 10 GLU A 168 ? ? 59.04 73.69 47 10 PRO A 274 ? ? -55.90 100.73 48 10 LEU A 276 ? ? -75.71 31.86 49 10 GLU A 294 ? ? -56.54 106.37 50 10 GLN A 295 ? ? -129.34 -167.97 51 10 CYS A 296 ? ? -106.24 -71.74 52 10 ILE A 298 ? ? -82.06 -79.92 53 11 ASP A 163 ? ? 67.98 106.83 54 11 ASN A 170 ? ? -104.15 78.49 55 11 PRO A 274 ? ? -62.70 94.82 56 11 LEU A 276 ? ? -80.29 34.43 57 11 GLN A 295 ? ? -108.71 -159.91 58 11 CYS A 296 ? ? -127.02 -73.92 59 11 ILE A 298 ? ? -86.94 -75.72 60 12 LEU A 276 ? ? -80.97 38.88 61 12 LEU A 285 ? ? -94.91 44.58 62 12 CYS A 296 ? ? -98.89 -68.92 63 12 ILE A 298 ? ? -89.90 -70.54 64 13 ASN A 170 ? ? -80.43 32.31 65 13 PRO A 274 ? ? -45.36 104.54 66 13 GLN A 295 ? ? -125.30 -163.10 67 13 CYS A 296 ? ? -110.66 -72.81 68 13 ILE A 298 ? ? -76.71 -79.05 69 14 ASP A 163 ? ? 67.14 106.71 70 14 PRO A 274 ? ? -46.46 108.55 71 14 LEU A 276 ? ? -78.33 21.92 72 14 GLU A 294 ? ? -64.16 97.14 73 14 GLN A 295 ? ? -118.66 -124.32 74 14 CYS A 296 ? ? -141.70 -71.02 75 14 ILE A 298 ? ? -88.17 -76.54 76 15 GLU A 164 ? ? 71.89 148.38 77 15 PRO A 274 ? ? -58.18 98.60 78 15 LEU A 276 ? ? -77.26 29.56 79 15 CYS A 296 ? ? -111.30 -72.00 80 15 ILE A 298 ? ? -73.78 -78.92 81 16 GLU A 168 ? ? 65.83 -84.66 82 16 PRO A 274 ? ? -58.41 102.32 83 16 GLN A 295 ? ? -125.84 -164.98 84 16 CYS A 296 ? ? -106.69 -71.72 85 16 ILE A 298 ? ? -79.77 -76.73 86 17 GLU A 164 ? ? 70.07 108.15 87 17 PRO A 274 ? ? -52.29 108.20 88 17 ALA A 291 ? ? 81.50 109.37 89 17 CYS A 296 ? ? -125.38 -77.41 90 17 ILE A 298 ? ? -73.27 -81.17 91 18 LEU A 276 ? ? -78.10 26.18 92 18 CYS A 296 ? ? -122.18 -72.84 93 18 ILE A 298 ? ? -74.25 -82.53 94 19 GLU A 164 ? ? 63.15 -174.16 95 19 PRO A 274 ? ? -48.35 107.36 96 19 LEU A 276 ? ? -80.78 33.09 97 19 CYS A 296 ? ? -116.46 -72.46 98 19 ILE A 298 ? ? -80.52 -77.95 99 20 ASN A 170 ? ? 58.83 78.98 100 20 PRO A 274 ? ? -53.40 104.87 101 20 LEU A 276 ? ? -77.77 27.60 102 20 LEU A 285 ? ? -91.16 31.63 103 20 CYS A 296 ? ? -100.51 -70.46 104 20 ILE A 298 ? ? -78.89 -78.58 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name FARNESYL _pdbx_entity_nonpoly.comp_id FAR #