HEADER TRANSFERASE 09-AUG-16 5LOK TITLE X-RAY STRUCTURE OF URIDINE PHOSPHORYLASE FROM VIBRIO CHOLERAE IN TITLE 2 COMPLEX WITH CYTIDINE AND CYTOSINE AT 1.11 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: URIDINE PHOSPHORYLASE; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 EC: 2.4.2.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: UDP, UDP_1, DN30_1909; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, ROSSMANN FOLD EXPDTA X-RAY DIFFRACTION AUTHOR I.I.PROKOFEV,A.A.LASHKOV,A.G.GABDOULKHAKOV,M.V.DONTSOVA,C.BETZEL, AUTHOR 2 A.M.MIKHAILOV REVDAT 2 10-JAN-24 5LOK 1 LINK REVDAT 1 23-AUG-17 5LOK 0 JRNL AUTH I.I.PROKOFEV,A.G.GABDOULKHAKOV,A.A.LASHKOV,V.V.BALAEV, JRNL AUTH 2 C.BETZEL,A.M.MIKHAILOV JRNL TITL X-RAY STRUCTURE OF URIDINE PHOSPHORYLASE FROM VIBRIO JRNL TITL 2 CHOLERAE IN COMPLEX WITH CYTIDINE AND CYTOSINE AT 1.11 A JRNL TITL 3 RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 3 NUMBER OF REFLECTIONS : 501489 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.115 REMARK 3 R VALUE (WORKING SET) : 0.114 REMARK 3 FREE R VALUE : 0.136 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.050 REMARK 3 FREE R VALUE TEST SET COUNT : 5265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7000 - 3.4461 0.97 18037 192 0.1140 0.1430 REMARK 3 2 3.4461 - 2.7354 0.97 17992 191 0.1119 0.1281 REMARK 3 3 2.7354 - 2.3897 0.96 17819 189 0.1101 0.1414 REMARK 3 4 2.3897 - 2.1712 0.95 17549 186 0.1023 0.1122 REMARK 3 5 2.1712 - 2.0156 0.95 17712 188 0.1004 0.1236 REMARK 3 6 2.0156 - 1.8968 0.95 17633 187 0.1006 0.1242 REMARK 3 7 1.8968 - 1.8018 0.95 17702 188 0.0979 0.1103 REMARK 3 8 1.8018 - 1.7234 0.94 17473 186 0.0973 0.1243 REMARK 3 9 1.7234 - 1.6570 0.94 17337 184 0.0951 0.1065 REMARK 3 10 1.6570 - 1.5998 0.94 17433 185 0.0936 0.1241 REMARK 3 11 1.5998 - 1.5498 0.94 17386 184 0.0936 0.1157 REMARK 3 12 1.5498 - 1.5055 0.93 17330 184 0.0951 0.1203 REMARK 3 13 1.5055 - 1.4659 0.93 17146 182 0.0971 0.1171 REMARK 3 14 1.4659 - 1.4301 0.93 17200 183 0.0974 0.1218 REMARK 3 15 1.4301 - 1.3976 0.92 17152 182 0.1026 0.1228 REMARK 3 16 1.3976 - 1.3678 0.92 16993 180 0.1131 0.1342 REMARK 3 17 1.3678 - 1.3405 0.92 17024 181 0.1198 0.1500 REMARK 3 18 1.3405 - 1.3152 0.92 17035 180 0.1241 0.1335 REMARK 3 19 1.3152 - 1.2917 0.91 16902 180 0.1256 0.1460 REMARK 3 20 1.2917 - 1.2698 0.91 16847 179 0.1327 0.1558 REMARK 3 21 1.2698 - 1.2493 0.91 16819 178 0.1335 0.1556 REMARK 3 22 1.2493 - 1.2301 0.90 16772 177 0.1396 0.1438 REMARK 3 23 1.2301 - 1.2120 0.90 16555 176 0.1588 0.1912 REMARK 3 24 1.2120 - 1.1949 0.90 16658 177 0.1687 0.2006 REMARK 3 25 1.1949 - 1.1788 0.89 16619 176 0.1731 0.1911 REMARK 3 26 1.1788 - 1.1635 0.89 16502 175 0.1866 0.1917 REMARK 3 27 1.1635 - 1.1489 0.89 16479 175 0.1949 0.2166 REMARK 3 28 1.1489 - 1.1351 0.86 15938 169 0.2232 0.2437 REMARK 3 29 1.1351 - 1.1219 0.73 13603 144 0.2527 0.2685 REMARK 3 30 1.1219 - 1.1093 0.14 2577 27 0.2757 0.2459 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.840 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 13247 REMARK 3 ANGLE : 1.401 18142 REMARK 3 CHIRALITY : 0.107 2089 REMARK 3 PLANARITY : 0.011 2409 REMARK 3 DIHEDRAL : 20.770 5016 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LOK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200001080. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 501694 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.109 REMARK 200 RESOLUTION RANGE LOW (A) : 46.083 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.5900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4K6O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, 0.1M TRIS-HCL, 0.2M REMARK 280 MGCL2X6H2O, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -163.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 465 THR D 2 REMARK 465 MET E 1 REMARK 465 MET F 1 REMARK 465 THR F 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS B 242 O HOH B 408 1.39 REMARK 500 HH21 ARG B 90 O HOH B 404 1.48 REMARK 500 HH22 ARG D 174 O HOH D 403 1.51 REMARK 500 HE2 HIS A 7 O5' CTN B 304 1.52 REMARK 500 HH11 ARG D 178 O HOH D 406 1.55 REMARK 500 OD1 ASN F 221 HG1 THR F 223 1.57 REMARK 500 OE2 GLU F 197 HO1 GOL F 304 1.57 REMARK 500 HE2 HIS F 7 O5' CTN E 305 1.60 REMARK 500 O HOH C 415 O HOH C 553 1.79 REMARK 500 NH2 ARG D 174 O HOH D 403 1.87 REMARK 500 O HOH E 574 O HOH E 600 1.89 REMARK 500 O HOH A 412 O HOH A 511 1.94 REMARK 500 O HOH A 537 O HOH B 601 1.97 REMARK 500 OD1 ASN A 39 O HOH A 404 1.98 REMARK 500 O HOH A 474 O HOH B 458 2.00 REMARK 500 O HOH D 462 O HOH D 522 2.03 REMARK 500 O2' CTN B 304 O HOH B 403 2.05 REMARK 500 O HOH F 576 O HOH F 614 2.08 REMARK 500 NH2 ARG B 90 O HOH B 404 2.08 REMARK 500 O HOH C 507 O HOH D 435 2.08 REMARK 500 O HOH C 650 O HOH C 671 2.11 REMARK 500 OE2 GLU D 185 O HOH D 405 2.12 REMARK 500 O HOH B 438 O HOH C 628 2.12 REMARK 500 NH1 ARG D 178 O HOH D 406 2.13 REMARK 500 O HOH B 656 O HOH B 660 2.13 REMARK 500 OE2 GLU C 126 O HOH C 404 2.13 REMARK 500 O HOH A 498 O HOH A 569 2.13 REMARK 500 O HOH B 577 O HOH B 585 2.14 REMARK 500 O HOH A 610 O HOH F 465 2.15 REMARK 500 O HOH D 440 O HOH D 608 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 26 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 90 NE - CZ - NH1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 90 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 LEU B 89 CB - CG - CD1 ANGL. DEV. = 11.9 DEGREES REMARK 500 ARG B 174 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG C 90 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG D 90 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG D 90 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG D 174 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG D 178 CG - CD - NE ANGL. DEV. = -12.6 DEGREES REMARK 500 GLU E 185 OE1 - CD - OE2 ANGL. DEV. = -9.2 DEGREES REMARK 500 ARG F 90 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG F 174 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 47 -139.02 53.39 REMARK 500 ARG A 47 -139.02 55.81 REMARK 500 LEU A 115 30.89 -97.87 REMARK 500 TYR A 162 -84.97 -96.72 REMARK 500 ARG B 47 -137.96 53.01 REMARK 500 LEU B 115 32.52 -97.84 REMARK 500 TYR B 162 -86.66 -99.97 REMARK 500 ARG C 47 -137.47 52.43 REMARK 500 LEU C 115 31.54 -96.84 REMARK 500 TYR C 162 -86.04 -100.06 REMARK 500 ARG D 47 -137.84 53.56 REMARK 500 ARG D 47 -137.84 56.07 REMARK 500 LEU D 115 32.84 -98.17 REMARK 500 TYR D 162 -87.66 -94.78 REMARK 500 ARG E 47 -136.65 52.99 REMARK 500 LEU E 115 30.95 -97.40 REMARK 500 TYR E 162 -86.55 -98.97 REMARK 500 ARG F 47 -136.74 54.12 REMARK 500 TYR F 162 -86.53 -99.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 650 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH F 621 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH F 622 DISTANCE = 7.36 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 302 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 48 OE2 REMARK 620 2 ILE A 68 O 154.8 REMARK 620 3 SER A 72 OG 87.7 67.5 REMARK 620 4 GLU B 48 OE2 102.2 87.0 117.8 REMARK 620 5 ILE B 68 O 86.4 94.8 85.2 155.4 REMARK 620 6 SER B 72 OG 118.8 84.6 139.8 87.6 68.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 302 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 48 OE2 REMARK 620 2 ILE C 68 O 155.7 REMARK 620 3 SER C 72 OG 88.2 67.8 REMARK 620 4 GLU D 48 OE2 101.1 87.4 117.9 REMARK 620 5 ILE D 68 O 87.1 94.4 84.8 155.8 REMARK 620 6 SER D 72 OG 118.4 84.3 139.1 88.7 67.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K E 304 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU E 48 OE2 REMARK 620 2 ILE E 68 O 155.7 REMARK 620 3 SER E 72 OG 88.2 68.0 REMARK 620 4 GLU F 48 OE2 99.9 87.3 117.8 REMARK 620 5 ILE F 68 O 87.9 95.2 85.5 155.4 REMARK 620 6 SER F 72 OG 118.0 85.4 141.1 87.2 68.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CTN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CTN B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYT B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CTN C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYT C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYT D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CTN D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYT D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL D 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL E 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL E 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO E 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K E 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CTN E 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYT E 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL F 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CTN F 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CYT F 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL F 304 DBREF 5LOK A 1 253 UNP Q9K4U1 Q9K4U1_VIBCL 1 253 DBREF 5LOK B 1 253 UNP Q9K4U1 Q9K4U1_VIBCL 1 253 DBREF 5LOK C 1 253 UNP Q9K4U1 Q9K4U1_VIBCL 1 253 DBREF 5LOK D 1 253 UNP Q9K4U1 Q9K4U1_VIBCL 1 253 DBREF 5LOK E 1 253 UNP Q9K4U1 Q9K4U1_VIBCL 1 253 DBREF 5LOK F 1 253 UNP Q9K4U1 Q9K4U1_VIBCL 1 253 SEQRES 1 A 253 MET THR LYS THR VAL PHE HIS LEU GLY VAL THR GLU ALA SEQRES 2 A 253 ASP LEU ASN GLY ALA THR LEU ALA ILE ILE PRO GLY ASP SEQRES 3 A 253 PRO ALA ARG VAL GLN LYS ILE ALA GLU LEU MET ASP ASN SEQRES 4 A 253 PRO VAL PHE LEU ALA SER HIS ARG GLU TYR THR VAL TYR SEQRES 5 A 253 ARG ALA GLU LEU ASP GLY GLN SER VAL VAL VAL CYS SER SEQRES 6 A 253 THR GLY ILE GLY GLY PRO SER THR SER ILE ALA VAL GLU SEQRES 7 A 253 GLU LEU ALA GLN LEU GLY VAL ARG THR PHE LEU ARG VAL SEQRES 8 A 253 GLY THR THR GLY ALA ILE GLN PRO HIS VAL ASN VAL GLY SEQRES 9 A 253 ASP MET ILE VAL THR THR GLY SER VAL ARG LEU ASP GLY SEQRES 10 A 253 ALA SER LEU HIS PHE ALA PRO MET GLU PHE PRO ALA VAL SEQRES 11 A 253 PRO ASP PHE ASP VAL ALA THR ALA MET LYS ALA ALA ALA SEQRES 12 A 253 GLN GLU SER GLY ALA THR VAL HIS MET GLY VAL THR ALA SEQRES 13 A 253 SER SER ASP THR PHE TYR PRO GLY GLN GLU ARG TYR ASP SEQRES 14 A 253 THR PHE THR GLY ARG VAL VAL ARG ARG PHE GLN GLY SER SEQRES 15 A 253 MET LYS GLU TRP GLN ASP MET GLY VAL LEU ASN PHE GLU SEQRES 16 A 253 MET GLU SER ALA THR LEU LEU THR MET CYS ALA SER SER SEQRES 17 A 253 GLY LEU LYS ALA GLY CYS VAL ALA GLY VAL ILE ILE ASN SEQRES 18 A 253 ARG THR GLN LYS GLU ILE PRO ASP HIS ALA THR LEU LYS SEQRES 19 A 253 GLU THR GLU ALA ARG SER ILE LYS VAL VAL VAL GLU ALA SEQRES 20 A 253 ALA ARG LYS MET LEU LYS SEQRES 1 B 253 MET THR LYS THR VAL PHE HIS LEU GLY VAL THR GLU ALA SEQRES 2 B 253 ASP LEU ASN GLY ALA THR LEU ALA ILE ILE PRO GLY ASP SEQRES 3 B 253 PRO ALA ARG VAL GLN LYS ILE ALA GLU LEU MET ASP ASN SEQRES 4 B 253 PRO VAL PHE LEU ALA SER HIS ARG GLU TYR THR VAL TYR SEQRES 5 B 253 ARG ALA GLU LEU ASP GLY GLN SER VAL VAL VAL CYS SER SEQRES 6 B 253 THR GLY ILE GLY GLY PRO SER THR SER ILE ALA VAL GLU SEQRES 7 B 253 GLU LEU ALA GLN LEU GLY VAL ARG THR PHE LEU ARG VAL SEQRES 8 B 253 GLY THR THR GLY ALA ILE GLN PRO HIS VAL ASN VAL GLY SEQRES 9 B 253 ASP MET ILE VAL THR THR GLY SER VAL ARG LEU ASP GLY SEQRES 10 B 253 ALA SER LEU HIS PHE ALA PRO MET GLU PHE PRO ALA VAL SEQRES 11 B 253 PRO ASP PHE ASP VAL ALA THR ALA MET LYS ALA ALA ALA SEQRES 12 B 253 GLN GLU SER GLY ALA THR VAL HIS MET GLY VAL THR ALA SEQRES 13 B 253 SER SER ASP THR PHE TYR PRO GLY GLN GLU ARG TYR ASP SEQRES 14 B 253 THR PHE THR GLY ARG VAL VAL ARG ARG PHE GLN GLY SER SEQRES 15 B 253 MET LYS GLU TRP GLN ASP MET GLY VAL LEU ASN PHE GLU SEQRES 16 B 253 MET GLU SER ALA THR LEU LEU THR MET CYS ALA SER SER SEQRES 17 B 253 GLY LEU LYS ALA GLY CYS VAL ALA GLY VAL ILE ILE ASN SEQRES 18 B 253 ARG THR GLN LYS GLU ILE PRO ASP HIS ALA THR LEU LYS SEQRES 19 B 253 GLU THR GLU ALA ARG SER ILE LYS VAL VAL VAL GLU ALA SEQRES 20 B 253 ALA ARG LYS MET LEU LYS SEQRES 1 C 253 MET THR LYS THR VAL PHE HIS LEU GLY VAL THR GLU ALA SEQRES 2 C 253 ASP LEU ASN GLY ALA THR LEU ALA ILE ILE PRO GLY ASP SEQRES 3 C 253 PRO ALA ARG VAL GLN LYS ILE ALA GLU LEU MET ASP ASN SEQRES 4 C 253 PRO VAL PHE LEU ALA SER HIS ARG GLU TYR THR VAL TYR SEQRES 5 C 253 ARG ALA GLU LEU ASP GLY GLN SER VAL VAL VAL CYS SER SEQRES 6 C 253 THR GLY ILE GLY GLY PRO SER THR SER ILE ALA VAL GLU SEQRES 7 C 253 GLU LEU ALA GLN LEU GLY VAL ARG THR PHE LEU ARG VAL SEQRES 8 C 253 GLY THR THR GLY ALA ILE GLN PRO HIS VAL ASN VAL GLY SEQRES 9 C 253 ASP MET ILE VAL THR THR GLY SER VAL ARG LEU ASP GLY SEQRES 10 C 253 ALA SER LEU HIS PHE ALA PRO MET GLU PHE PRO ALA VAL SEQRES 11 C 253 PRO ASP PHE ASP VAL ALA THR ALA MET LYS ALA ALA ALA SEQRES 12 C 253 GLN GLU SER GLY ALA THR VAL HIS MET GLY VAL THR ALA SEQRES 13 C 253 SER SER ASP THR PHE TYR PRO GLY GLN GLU ARG TYR ASP SEQRES 14 C 253 THR PHE THR GLY ARG VAL VAL ARG ARG PHE GLN GLY SER SEQRES 15 C 253 MET LYS GLU TRP GLN ASP MET GLY VAL LEU ASN PHE GLU SEQRES 16 C 253 MET GLU SER ALA THR LEU LEU THR MET CYS ALA SER SER SEQRES 17 C 253 GLY LEU LYS ALA GLY CYS VAL ALA GLY VAL ILE ILE ASN SEQRES 18 C 253 ARG THR GLN LYS GLU ILE PRO ASP HIS ALA THR LEU LYS SEQRES 19 C 253 GLU THR GLU ALA ARG SER ILE LYS VAL VAL VAL GLU ALA SEQRES 20 C 253 ALA ARG LYS MET LEU LYS SEQRES 1 D 253 MET THR LYS THR VAL PHE HIS LEU GLY VAL THR GLU ALA SEQRES 2 D 253 ASP LEU ASN GLY ALA THR LEU ALA ILE ILE PRO GLY ASP SEQRES 3 D 253 PRO ALA ARG VAL GLN LYS ILE ALA GLU LEU MET ASP ASN SEQRES 4 D 253 PRO VAL PHE LEU ALA SER HIS ARG GLU TYR THR VAL TYR SEQRES 5 D 253 ARG ALA GLU LEU ASP GLY GLN SER VAL VAL VAL CYS SER SEQRES 6 D 253 THR GLY ILE GLY GLY PRO SER THR SER ILE ALA VAL GLU SEQRES 7 D 253 GLU LEU ALA GLN LEU GLY VAL ARG THR PHE LEU ARG VAL SEQRES 8 D 253 GLY THR THR GLY ALA ILE GLN PRO HIS VAL ASN VAL GLY SEQRES 9 D 253 ASP MET ILE VAL THR THR GLY SER VAL ARG LEU ASP GLY SEQRES 10 D 253 ALA SER LEU HIS PHE ALA PRO MET GLU PHE PRO ALA VAL SEQRES 11 D 253 PRO ASP PHE ASP VAL ALA THR ALA MET LYS ALA ALA ALA SEQRES 12 D 253 GLN GLU SER GLY ALA THR VAL HIS MET GLY VAL THR ALA SEQRES 13 D 253 SER SER ASP THR PHE TYR PRO GLY GLN GLU ARG TYR ASP SEQRES 14 D 253 THR PHE THR GLY ARG VAL VAL ARG ARG PHE GLN GLY SER SEQRES 15 D 253 MET LYS GLU TRP GLN ASP MET GLY VAL LEU ASN PHE GLU SEQRES 16 D 253 MET GLU SER ALA THR LEU LEU THR MET CYS ALA SER SER SEQRES 17 D 253 GLY LEU LYS ALA GLY CYS VAL ALA GLY VAL ILE ILE ASN SEQRES 18 D 253 ARG THR GLN LYS GLU ILE PRO ASP HIS ALA THR LEU LYS SEQRES 19 D 253 GLU THR GLU ALA ARG SER ILE LYS VAL VAL VAL GLU ALA SEQRES 20 D 253 ALA ARG LYS MET LEU LYS SEQRES 1 E 253 MET THR LYS THR VAL PHE HIS LEU GLY VAL THR GLU ALA SEQRES 2 E 253 ASP LEU ASN GLY ALA THR LEU ALA ILE ILE PRO GLY ASP SEQRES 3 E 253 PRO ALA ARG VAL GLN LYS ILE ALA GLU LEU MET ASP ASN SEQRES 4 E 253 PRO VAL PHE LEU ALA SER HIS ARG GLU TYR THR VAL TYR SEQRES 5 E 253 ARG ALA GLU LEU ASP GLY GLN SER VAL VAL VAL CYS SER SEQRES 6 E 253 THR GLY ILE GLY GLY PRO SER THR SER ILE ALA VAL GLU SEQRES 7 E 253 GLU LEU ALA GLN LEU GLY VAL ARG THR PHE LEU ARG VAL SEQRES 8 E 253 GLY THR THR GLY ALA ILE GLN PRO HIS VAL ASN VAL GLY SEQRES 9 E 253 ASP MET ILE VAL THR THR GLY SER VAL ARG LEU ASP GLY SEQRES 10 E 253 ALA SER LEU HIS PHE ALA PRO MET GLU PHE PRO ALA VAL SEQRES 11 E 253 PRO ASP PHE ASP VAL ALA THR ALA MET LYS ALA ALA ALA SEQRES 12 E 253 GLN GLU SER GLY ALA THR VAL HIS MET GLY VAL THR ALA SEQRES 13 E 253 SER SER ASP THR PHE TYR PRO GLY GLN GLU ARG TYR ASP SEQRES 14 E 253 THR PHE THR GLY ARG VAL VAL ARG ARG PHE GLN GLY SER SEQRES 15 E 253 MET LYS GLU TRP GLN ASP MET GLY VAL LEU ASN PHE GLU SEQRES 16 E 253 MET GLU SER ALA THR LEU LEU THR MET CYS ALA SER SER SEQRES 17 E 253 GLY LEU LYS ALA GLY CYS VAL ALA GLY VAL ILE ILE ASN SEQRES 18 E 253 ARG THR GLN LYS GLU ILE PRO ASP HIS ALA THR LEU LYS SEQRES 19 E 253 GLU THR GLU ALA ARG SER ILE LYS VAL VAL VAL GLU ALA SEQRES 20 E 253 ALA ARG LYS MET LEU LYS SEQRES 1 F 253 MET THR LYS THR VAL PHE HIS LEU GLY VAL THR GLU ALA SEQRES 2 F 253 ASP LEU ASN GLY ALA THR LEU ALA ILE ILE PRO GLY ASP SEQRES 3 F 253 PRO ALA ARG VAL GLN LYS ILE ALA GLU LEU MET ASP ASN SEQRES 4 F 253 PRO VAL PHE LEU ALA SER HIS ARG GLU TYR THR VAL TYR SEQRES 5 F 253 ARG ALA GLU LEU ASP GLY GLN SER VAL VAL VAL CYS SER SEQRES 6 F 253 THR GLY ILE GLY GLY PRO SER THR SER ILE ALA VAL GLU SEQRES 7 F 253 GLU LEU ALA GLN LEU GLY VAL ARG THR PHE LEU ARG VAL SEQRES 8 F 253 GLY THR THR GLY ALA ILE GLN PRO HIS VAL ASN VAL GLY SEQRES 9 F 253 ASP MET ILE VAL THR THR GLY SER VAL ARG LEU ASP GLY SEQRES 10 F 253 ALA SER LEU HIS PHE ALA PRO MET GLU PHE PRO ALA VAL SEQRES 11 F 253 PRO ASP PHE ASP VAL ALA THR ALA MET LYS ALA ALA ALA SEQRES 12 F 253 GLN GLU SER GLY ALA THR VAL HIS MET GLY VAL THR ALA SEQRES 13 F 253 SER SER ASP THR PHE TYR PRO GLY GLN GLU ARG TYR ASP SEQRES 14 F 253 THR PHE THR GLY ARG VAL VAL ARG ARG PHE GLN GLY SER SEQRES 15 F 253 MET LYS GLU TRP GLN ASP MET GLY VAL LEU ASN PHE GLU SEQRES 16 F 253 MET GLU SER ALA THR LEU LEU THR MET CYS ALA SER SER SEQRES 17 F 253 GLY LEU LYS ALA GLY CYS VAL ALA GLY VAL ILE ILE ASN SEQRES 18 F 253 ARG THR GLN LYS GLU ILE PRO ASP HIS ALA THR LEU LYS SEQRES 19 F 253 GLU THR GLU ALA ARG SER ILE LYS VAL VAL VAL GLU ALA SEQRES 20 F 253 ALA ARG LYS MET LEU LYS HET EDO A 301 4 HET K A 302 1 HET CTN A 303 30 HET CYT A 304 12 HET GOL A 305 11 HET SO4 A 306 10 HET CL B 301 1 HET CL B 302 1 HET EDO B 303 4 HET CTN B 304 30 HET CYT B 305 12 HET GOL B 306 9 HET CL C 301 1 HET K C 302 1 HET CTN C 303 30 HET CYT C 304 12 HET GOL C 305 10 HET CYT D 301 12 HET CTN D 302 30 HET CYT D 303 12 HET GOL D 304 10 HET CL E 301 1 HET CL E 302 1 HET EDO E 303 4 HET K E 304 1 HET CTN E 305 30 HET CYT E 306 12 HET GOL E 307 10 HET CL F 301 1 HET CTN F 302 30 HET CYT F 303 12 HET GOL F 304 10 HETNAM EDO 1,2-ETHANEDIOL HETNAM K POTASSIUM ION HETNAM CTN 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE HETNAM CYT 6-AMINOPYRIMIDIN-2(1H)-ONE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL HETSYN CTN CYTIDINE HETSYN CYT CYTOSINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 EDO 3(C2 H6 O2) FORMUL 8 K 3(K 1+) FORMUL 9 CTN 6(C9 H13 N3 O5) FORMUL 10 CYT 7(C4 H5 N3 O) FORMUL 11 GOL 6(C3 H8 O3) FORMUL 12 SO4 O4 S 2- FORMUL 13 CL 6(CL 1-) FORMUL 39 HOH *1508(H2 O) HELIX 1 AA1 GLU A 12 ASN A 16 5 5 HELIX 2 AA2 ALA A 28 GLU A 35 1 8 HELIX 3 AA3 GLY A 69 LEU A 83 1 15 HELIX 4 AA4 GLY A 117 PHE A 122 5 6 HELIX 5 AA5 ASP A 132 SER A 146 1 15 HELIX 6 AA6 TYR A 162 GLU A 166 5 5 HELIX 7 AA7 VAL A 176 GLN A 180 5 5 HELIX 8 AA8 GLY A 181 MET A 189 1 9 HELIX 9 AA9 GLU A 197 SER A 207 1 11 HELIX 10 AB1 THR A 232 LEU A 252 1 21 HELIX 11 AB2 GLU B 12 ASN B 16 5 5 HELIX 12 AB3 ALA B 28 GLU B 35 1 8 HELIX 13 AB4 GLY B 69 LEU B 83 1 15 HELIX 14 AB5 GLY B 117 PHE B 122 5 6 HELIX 15 AB6 ASP B 132 SER B 146 1 15 HELIX 16 AB7 TYR B 162 GLU B 166 5 5 HELIX 17 AB8 VAL B 176 GLN B 180 5 5 HELIX 18 AB9 GLY B 181 MET B 189 1 9 HELIX 19 AC1 GLU B 197 SER B 207 1 11 HELIX 20 AC2 ASP B 229 LYS B 253 1 25 HELIX 21 AC3 GLU C 12 ASN C 16 5 5 HELIX 22 AC4 ALA C 28 GLU C 35 1 8 HELIX 23 AC5 GLY C 69 LEU C 83 1 15 HELIX 24 AC6 GLY C 117 PHE C 122 5 6 HELIX 25 AC7 ASP C 132 SER C 146 1 15 HELIX 26 AC8 TYR C 162 GLU C 166 5 5 HELIX 27 AC9 VAL C 176 GLN C 180 5 5 HELIX 28 AD1 GLY C 181 MET C 189 1 9 HELIX 29 AD2 GLU C 197 SER C 207 1 11 HELIX 30 AD3 ASP C 229 LEU C 252 1 24 HELIX 31 AD4 GLU D 12 ASN D 16 5 5 HELIX 32 AD5 ALA D 28 GLU D 35 1 8 HELIX 33 AD6 GLY D 69 LEU D 83 1 15 HELIX 34 AD7 GLY D 117 PHE D 122 5 6 HELIX 35 AD8 ASP D 132 SER D 146 1 15 HELIX 36 AD9 TYR D 162 GLU D 166 5 5 HELIX 37 AE1 VAL D 176 GLN D 180 5 5 HELIX 38 AE2 GLY D 181 MET D 189 1 9 HELIX 39 AE3 GLU D 197 SER D 207 1 11 HELIX 40 AE4 ASP D 229 LYS D 253 1 25 HELIX 41 AE5 GLU E 12 ASN E 16 5 5 HELIX 42 AE6 ALA E 28 GLU E 35 1 8 HELIX 43 AE7 GLY E 69 LEU E 83 1 15 HELIX 44 AE8 GLY E 117 PHE E 122 5 6 HELIX 45 AE9 ASP E 132 SER E 146 1 15 HELIX 46 AF1 TYR E 162 GLU E 166 5 5 HELIX 47 AF2 VAL E 176 GLN E 180 5 5 HELIX 48 AF3 GLY E 181 MET E 189 1 9 HELIX 49 AF4 GLU E 197 SER E 207 1 11 HELIX 50 AF5 ASP E 229 LEU E 252 1 24 HELIX 51 AF6 GLU F 12 ASN F 16 5 5 HELIX 52 AF7 ALA F 28 GLU F 35 1 8 HELIX 53 AF8 GLY F 69 LEU F 83 1 15 HELIX 54 AF9 GLY F 117 PHE F 122 5 6 HELIX 55 AG1 ASP F 132 SER F 146 1 15 HELIX 56 AG2 TYR F 162 GLU F 166 5 5 HELIX 57 AG3 VAL F 176 GLN F 180 5 5 HELIX 58 AG4 GLY F 181 MET F 189 1 9 HELIX 59 AG5 GLU F 197 SER F 207 1 11 HELIX 60 AG6 ASP F 229 LEU F 252 1 24 SHEET 1 AA110 ASP A 38 HIS A 46 0 SHEET 2 AA110 TYR A 49 LEU A 56 -1 O GLU A 55 N ASP A 38 SHEET 3 AA110 GLN A 59 CYS A 64 -1 O GLN A 59 N LEU A 56 SHEET 4 AA110 LEU A 20 PRO A 24 1 N ILE A 22 O VAL A 62 SHEET 5 AA110 THR A 87 ALA A 96 1 O LEU A 89 N ALA A 21 SHEET 6 AA110 LYS A 211 ASN A 221 1 O LYS A 211 N PHE A 88 SHEET 7 AA110 MET A 106 LEU A 115 -1 N ILE A 107 O ALA A 216 SHEET 8 AA110 VAL A 150 SER A 158 1 O THR A 155 N VAL A 113 SHEET 9 AA110 ASN A 193 GLU A 195 1 O ASN A 193 N ALA A 156 SHEET 10 AA110 THR A 87 ALA A 96 -1 N GLY A 95 O PHE A 194 SHEET 1 AA210 ASP B 38 HIS B 46 0 SHEET 2 AA210 TYR B 49 LEU B 56 -1 O VAL B 51 N LEU B 43 SHEET 3 AA210 GLN B 59 CYS B 64 -1 O GLN B 59 N LEU B 56 SHEET 4 AA210 LEU B 20 PRO B 24 1 N ILE B 22 O VAL B 62 SHEET 5 AA210 THR B 87 ALA B 96 1 O LEU B 89 N ALA B 21 SHEET 6 AA210 LYS B 211 ASN B 221 1 O LYS B 211 N PHE B 88 SHEET 7 AA210 MET B 106 LEU B 115 -1 N ILE B 107 O ALA B 216 SHEET 8 AA210 VAL B 150 SER B 158 1 O THR B 155 N VAL B 113 SHEET 9 AA210 ASN B 193 GLU B 195 1 O ASN B 193 N ALA B 156 SHEET 10 AA210 THR B 87 ALA B 96 -1 N GLY B 95 O PHE B 194 SHEET 1 AA310 ASP C 38 HIS C 46 0 SHEET 2 AA310 TYR C 49 LEU C 56 -1 O GLU C 55 N ASP C 38 SHEET 3 AA310 GLN C 59 CYS C 64 -1 O VAL C 61 N ALA C 54 SHEET 4 AA310 LEU C 20 PRO C 24 1 N ILE C 22 O VAL C 62 SHEET 5 AA310 THR C 87 ALA C 96 1 O THR C 87 N ALA C 21 SHEET 6 AA310 LYS C 211 ASN C 221 1 O LYS C 211 N PHE C 88 SHEET 7 AA310 MET C 106 LEU C 115 -1 N ILE C 107 O ALA C 216 SHEET 8 AA310 VAL C 150 SER C 158 1 O THR C 155 N VAL C 113 SHEET 9 AA310 ASN C 193 GLU C 195 1 O ASN C 193 N ALA C 156 SHEET 10 AA310 THR C 87 ALA C 96 -1 N GLY C 95 O PHE C 194 SHEET 1 AA410 ASP D 38 HIS D 46 0 SHEET 2 AA410 TYR D 49 LEU D 56 -1 O GLU D 55 N ASP D 38 SHEET 3 AA410 GLN D 59 CYS D 64 -1 O GLN D 59 N LEU D 56 SHEET 4 AA410 LEU D 20 PRO D 24 1 N ILE D 22 O VAL D 62 SHEET 5 AA410 THR D 87 ALA D 96 1 O THR D 87 N ALA D 21 SHEET 6 AA410 LYS D 211 ASN D 221 1 O LYS D 211 N PHE D 88 SHEET 7 AA410 MET D 106 LEU D 115 -1 N ILE D 107 O ALA D 216 SHEET 8 AA410 VAL D 150 SER D 158 1 O THR D 155 N VAL D 113 SHEET 9 AA410 ASN D 193 GLU D 195 1 O ASN D 193 N ALA D 156 SHEET 10 AA410 THR D 87 ALA D 96 -1 N GLY D 95 O PHE D 194 SHEET 1 AA510 ASP E 38 HIS E 46 0 SHEET 2 AA510 TYR E 49 LEU E 56 -1 O ARG E 53 N VAL E 41 SHEET 3 AA510 GLN E 59 CYS E 64 -1 O VAL E 61 N ALA E 54 SHEET 4 AA510 LEU E 20 ILE E 23 1 N ILE E 22 O VAL E 62 SHEET 5 AA510 THR E 87 ALA E 96 1 O THR E 87 N ALA E 21 SHEET 6 AA510 LYS E 211 ASN E 221 1 O ILE E 220 N ALA E 96 SHEET 7 AA510 MET E 106 LEU E 115 -1 N ILE E 107 O ALA E 216 SHEET 8 AA510 VAL E 150 SER E 158 1 O THR E 155 N VAL E 113 SHEET 9 AA510 ASN E 193 GLU E 195 1 O ASN E 193 N ALA E 156 SHEET 10 AA510 THR E 87 ALA E 96 -1 N GLY E 95 O PHE E 194 SHEET 1 AA610 ASP F 38 HIS F 46 0 SHEET 2 AA610 TYR F 49 LEU F 56 -1 O GLU F 55 N ASP F 38 SHEET 3 AA610 GLN F 59 CYS F 64 -1 O GLN F 59 N LEU F 56 SHEET 4 AA610 LEU F 20 PRO F 24 1 N ILE F 22 O VAL F 62 SHEET 5 AA610 THR F 87 ALA F 96 1 O LEU F 89 N ALA F 21 SHEET 6 AA610 LYS F 211 ASN F 221 1 O GLY F 213 N ARG F 90 SHEET 7 AA610 MET F 106 LEU F 115 -1 N ILE F 107 O ALA F 216 SHEET 8 AA610 VAL F 150 SER F 158 1 O HIS F 151 N VAL F 108 SHEET 9 AA610 ASN F 193 GLU F 195 1 O ASN F 193 N ALA F 156 SHEET 10 AA610 THR F 87 ALA F 96 -1 N GLY F 95 O PHE F 194 LINK OE2 GLU A 48 K K A 302 1555 1555 2.75 LINK O ILE A 68 K K A 302 1555 1555 2.94 LINK OG SER A 72 K K A 302 1555 1555 2.91 LINK K K A 302 OE2 GLU B 48 1555 1555 2.77 LINK K K A 302 O ILE B 68 1555 1555 2.96 LINK K K A 302 OG SER B 72 1555 1555 2.90 LINK OE2 GLU C 48 K K C 302 1555 1555 2.77 LINK O ILE C 68 K K C 302 1555 1555 2.94 LINK OG SER C 72 K K C 302 1555 1555 2.92 LINK K K C 302 OE2 GLU D 48 1555 1555 2.76 LINK K K C 302 O ILE D 68 1555 1555 2.94 LINK K K C 302 OG SER D 72 1555 1555 2.90 LINK OE2 GLU E 48 K K E 304 1555 1555 2.76 LINK O ILE E 68 K K E 304 1555 1555 2.91 LINK OG SER E 72 K K E 304 1555 1555 2.89 LINK K K E 304 OE2 GLU F 48 1555 1555 2.76 LINK K K E 304 O ILE F 68 1555 1555 2.90 LINK K K E 304 OG SER F 72 1555 1555 2.90 SITE 1 AC1 8 ARG A 178 HOH A 433 HOH A 484 HOH A 489 SITE 2 AC1 8 HOH A 535 HOH A 615 LEU B 120 HOH F 405 SITE 1 AC2 6 GLU A 48 ILE A 68 SER A 72 GLU B 48 SITE 2 AC2 6 ILE B 68 SER B 72 SITE 1 AC3 20 THR A 93 THR A 94 GLY A 95 PHE A 161 SITE 2 AC3 20 GLN A 165 ARG A 167 PHE A 194 GLU A 195 SITE 3 AC3 20 MET A 196 GLU A 197 ILE A 220 CYT A 304 SITE 4 AC3 20 GOL A 305 SO4 A 306 HOH A 402 HOH A 409 SITE 5 AC3 20 HOH A 419 HOH A 442 HOH A 450 HIS B 7 SITE 1 AC4 12 THR A 93 THR A 94 GLY A 95 PHE A 161 SITE 2 AC4 12 GLN A 165 ARG A 167 GLU A 195 MET A 196 SITE 3 AC4 12 ILE A 220 CTN A 303 GOL A 305 HOH A 442 SITE 1 AC5 10 ILE A 68 THR A 93 GLU A 197 CTN A 303 SITE 2 AC5 10 CYT A 304 SO4 A 306 HOH A 409 HOH A 419 SITE 3 AC5 10 HOH A 450 HIS B 7 SITE 1 AC6 15 PRO A 24 GLY A 25 ASP A 26 ARG A 29 SITE 2 AC6 15 ARG A 90 VAL A 91 GLY A 92 THR A 93 SITE 3 AC6 15 GLU A 237 CTN A 303 GOL A 305 HOH A 402 SITE 4 AC6 15 HOH A 409 HOH A 419 ARG B 47 SITE 1 AC7 4 GLY B 25 ASP B 26 HOH B 431 HOH B 610 SITE 1 AC8 3 ILE B 220 ASN B 221 HOH B 541 SITE 1 AC9 7 LEU A 120 ARG B 178 HOH B 432 HOH B 490 SITE 2 AC9 7 HOH B 494 HOH B 507 HOH B 574 SITE 1 AD1 17 HIS A 7 THR B 93 THR B 94 GLY B 95 SITE 2 AD1 17 PHE B 161 GLN B 165 PHE B 194 GLU B 195 SITE 3 AD1 17 MET B 196 GLU B 197 ILE B 220 CYT B 305 SITE 4 AD1 17 GOL B 306 HOH B 403 HOH B 415 HOH B 491 SITE 5 AD1 17 HOH B 510 SITE 1 AD2 11 THR B 94 GLY B 95 PHE B 161 GLN B 165 SITE 2 AD2 11 ARG B 167 GLU B 195 MET B 196 ILE B 220 SITE 3 AD2 11 CTN B 304 GOL B 306 HOH B 491 SITE 1 AD3 8 HIS A 7 ILE B 68 THR B 93 GLU B 197 SITE 2 AD3 8 CTN B 304 CYT B 305 HOH B 415 HOH B 510 SITE 1 AD4 3 GLY C 25 ASP C 26 ARG C 29 SITE 1 AD5 6 GLU C 48 ILE C 68 SER C 72 GLU D 48 SITE 2 AD5 6 ILE D 68 SER D 72 SITE 1 AD6 18 THR C 93 THR C 94 GLY C 95 PHE C 161 SITE 2 AD6 18 GLN C 165 ARG C 167 GLU C 195 MET C 196 SITE 3 AD6 18 GLU C 197 ILE C 220 CYT C 304 GOL C 305 SITE 4 AD6 18 HOH C 410 HOH C 440 HOH C 491 HOH C 504 SITE 5 AD6 18 HOH C 535 HIS D 7 SITE 1 AD7 12 THR C 94 GLY C 95 PHE C 161 GLN C 165 SITE 2 AD7 12 ARG C 167 PHE C 194 GLU C 195 MET C 196 SITE 3 AD7 12 ILE C 220 CTN C 303 GOL C 305 HOH C 504 SITE 1 AD8 9 ILE C 68 THR C 93 GLU C 197 CTN C 303 SITE 2 AD8 9 CYT C 304 HOH C 410 HOH C 440 HOH C 491 SITE 3 AD8 9 HIS D 7 SITE 1 AD9 6 GLN A 224 ASP A 229 TYR D 168 HOH D 401 SITE 2 AD9 6 HOH D 411 HOH D 464 SITE 1 AE1 17 HIS C 7 THR D 93 THR D 94 GLY D 95 SITE 2 AE1 17 PHE D 161 GLN D 165 ARG D 167 GLU D 195 SITE 3 AE1 17 MET D 196 GLU D 197 ILE D 220 CYT D 303 SITE 4 AE1 17 GOL D 304 HOH D 413 HOH D 414 HOH D 428 SITE 5 AE1 17 HOH D 479 SITE 1 AE2 12 THR D 93 THR D 94 GLY D 95 PHE D 161 SITE 2 AE2 12 GLN D 165 ARG D 167 GLU D 195 MET D 196 SITE 3 AE2 12 ILE D 220 CTN D 302 GOL D 304 HOH D 488 SITE 1 AE3 9 HIS C 7 ILE D 68 THR D 93 GLU D 197 SITE 2 AE3 9 CTN D 302 CYT D 303 HOH D 413 HOH D 414 SITE 3 AE3 9 HOH D 479 SITE 1 AE4 4 ILE E 220 ASN E 221 GLU E 226 HOH E 515 SITE 1 AE5 5 GLY E 25 ASP E 26 ARG E 29 HOH E 466 SITE 2 AE5 5 HOH E 599 SITE 1 AE6 6 ARG E 178 HOH E 414 HOH E 440 HOH E 451 SITE 2 AE6 6 HOH E 568 LEU F 120 SITE 1 AE7 6 GLU E 48 ILE E 68 SER E 72 GLU F 48 SITE 2 AE7 6 ILE F 68 SER F 72 SITE 1 AE8 18 THR E 93 THR E 94 GLY E 95 PHE E 161 SITE 2 AE8 18 GLN E 165 ARG E 167 GLU E 195 MET E 196 SITE 3 AE8 18 GLU E 197 ILE E 220 CYT E 306 GOL E 307 SITE 4 AE8 18 HOH E 405 HOH E 422 HOH E 436 HOH E 480 SITE 5 AE8 18 HOH E 501 HIS F 7 SITE 1 AE9 12 THR E 93 THR E 94 GLY E 95 PHE E 161 SITE 2 AE9 12 GLN E 165 ARG E 167 GLU E 195 MET E 196 SITE 3 AE9 12 ILE E 220 CTN E 305 GOL E 307 HOH E 480 SITE 1 AF1 9 ILE E 68 THR E 93 GLU E 197 CTN E 305 SITE 2 AF1 9 CYT E 306 HOH E 405 HOH E 422 HOH E 436 SITE 3 AF1 9 HIS F 7 SITE 1 AF2 4 HOH E 608 GLY F 25 ASP F 26 HOH F 429 SITE 1 AF3 17 HIS E 7 THR F 93 THR F 94 GLY F 95 SITE 2 AF3 17 PHE F 161 GLN F 165 ARG F 167 GLU F 195 SITE 3 AF3 17 MET F 196 GLU F 197 CYT F 303 GOL F 304 SITE 4 AF3 17 HOH F 404 HOH F 409 HOH F 416 HOH F 425 SITE 5 AF3 17 HOH F 478 SITE 1 AF4 11 THR F 94 GLY F 95 PHE F 161 GLN F 165 SITE 2 AF4 11 ARG F 167 GLU F 195 MET F 196 ILE F 220 SITE 3 AF4 11 CTN F 302 GOL F 304 HOH F 478 SITE 1 AF5 9 HIS E 7 ILE F 68 THR F 93 GLU F 197 SITE 2 AF5 9 CTN F 302 CYT F 303 HOH F 409 HOH F 416 SITE 3 AF5 9 HOH F 425 CRYST1 64.258 71.772 89.228 69.35 72.17 85.78 P 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015562 -0.001150 -0.004911 0.00000 SCALE2 0.000000 0.013971 -0.005180 0.00000 SCALE3 0.000000 0.000000 0.012556 0.00000