HEADER TRANSFERASE 14-AUG-16 5LPO TITLE TRNA GUANINE TRANSGLYCOSYLASE (TGT) IN CO-CRYSTALLIZED COMPLEX WITH 6- TITLE 2 AMINO-2-(METHYLAMINO)-4-(2-((2R,3R,4R,5R)-3,4,5- TITLE 3 TRIMETHOXYTETRAHYDROFURAN-2-YL)ETHYL)-1H-IMIDAZO[4,5-G]QUINAZOLIN- TITLE 4 8(7H)-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME,TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS SUBSP. MOBILIS (STRAIN ATCC SOURCE 3 31821 / ZM4 / CP4); SOURCE 4 ORGANISM_TAXID: 264203; SOURCE 5 STRAIN: ATCC 31821 / ZM4 / CP4; SOURCE 6 GENE: TGT, ZMO0363; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CARBOHYDRATE-BASED INHIBITORS, HOMODIMER, SHIGELLOSIS, TRANSFERASE, KEYWDS 2 TRANSFERASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR F.R.EHRMANN,A.HEINE,G.KLEBE REVDAT 2 10-JAN-24 5LPO 1 REMARK REVDAT 1 30-AUG-17 5LPO 0 JRNL AUTH F.R.EHRMANN,T.BOTZANOWSKI,T.PFAFFENDER,A.HEINE,F.DIEDERICH, JRNL AUTH 2 S.SANGLIER-CIANFERANI,G.KLEBE JRNL TITL CARBOHYDRATE-BASED INHIBITORS TARGETING THE RIBOSE-34 POCKET JRNL TITL 2 OF Z.MOBILIS TGT AND CHANGING THE OLIGOMERIC STATE OF THE JRNL TITL 3 HOMODIMER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: 1492) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 71169 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.132 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4400 - 4.1459 0.98 2789 147 0.1545 0.1680 REMARK 3 2 4.1459 - 3.2911 0.98 2747 145 0.1292 0.1377 REMARK 3 3 3.2911 - 2.8752 0.99 2767 146 0.1395 0.1652 REMARK 3 4 2.8752 - 2.6124 0.99 2737 144 0.1363 0.1637 REMARK 3 5 2.6124 - 2.4252 0.99 2735 143 0.1376 0.1732 REMARK 3 6 2.4252 - 2.2822 1.00 2764 146 0.1286 0.1436 REMARK 3 7 2.2822 - 2.1679 0.99 2745 145 0.1270 0.1705 REMARK 3 8 2.1679 - 2.0735 1.00 2753 144 0.1158 0.1648 REMARK 3 9 2.0735 - 1.9937 0.99 2743 145 0.1163 0.1433 REMARK 3 10 1.9937 - 1.9249 0.99 2711 142 0.1149 0.1582 REMARK 3 11 1.9249 - 1.8647 0.99 2737 145 0.1143 0.1725 REMARK 3 12 1.8647 - 1.8114 1.00 2759 145 0.1129 0.1500 REMARK 3 13 1.8114 - 1.7637 1.00 2740 144 0.1105 0.1540 REMARK 3 14 1.7637 - 1.7207 1.00 2726 143 0.1125 0.1563 REMARK 3 15 1.7207 - 1.6816 1.00 2772 146 0.1178 0.1571 REMARK 3 16 1.6816 - 1.6458 1.00 2765 146 0.1145 0.1448 REMARK 3 17 1.6458 - 1.6129 1.00 2728 143 0.1145 0.1567 REMARK 3 18 1.6129 - 1.5824 1.00 2726 144 0.1156 0.1848 REMARK 3 19 1.5824 - 1.5542 1.00 2774 146 0.1214 0.1505 REMARK 3 20 1.5542 - 1.5278 1.00 2744 144 0.1287 0.1898 REMARK 3 21 1.5278 - 1.5032 0.99 2742 145 0.1392 0.2066 REMARK 3 22 1.5032 - 1.4801 1.00 2721 143 0.1430 0.1940 REMARK 3 23 1.4801 - 1.4583 0.97 2713 143 0.1732 0.2179 REMARK 3 24 1.4583 - 1.4377 0.87 2351 124 0.2024 0.2496 REMARK 3 25 1.4377 - 1.4200 0.76 2121 111 0.2457 0.2968 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3105 REMARK 3 ANGLE : 0.826 4208 REMARK 3 CHIRALITY : 0.071 440 REMARK 3 PLANARITY : 0.005 584 REMARK 3 DIHEDRAL : 19.752 1166 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LPO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200001167. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918408 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 71176 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 42.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04400 REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.32200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1P0D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 8000, 100MM MES, 1MM DTT, 10% REMARK 280 DMSO, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 42.33100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.40950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 42.33100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.40950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 169.32400 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 LEU A 54 REMARK 465 LYS A 55 REMARK 465 PRO A 56 REMARK 465 GLU A 57 REMARK 465 THR A 58 REMARK 465 VAL A 59 REMARK 465 ARG A 60 REMARK 465 ALA A 61 REMARK 465 THR A 62 REMARK 465 GLY A 63 REMARK 465 SER A 113 REMARK 465 LEU A 114 REMARK 465 ARG A 384 REMARK 465 ASN A 385 REMARK 465 SER A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 ARG A 82 CD NE CZ NH1 NH2 REMARK 470 GLN A 107 OE1 NE2 REMARK 470 MET A 109 CE REMARK 470 SER A 110 OG REMARK 470 SER A 112 OG REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLN A 117 CG CD OE1 NE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 HIS A 127 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 MET A 134 CE REMARK 470 ARG A 167 CD NE CZ NH1 NH2 REMARK 470 LYS A 190 CD CE NZ REMARK 470 GLU A 191 CD OE1 OE2 REMARK 470 GLU A 220 OE1 OE2 REMARK 470 LYS A 264 CE NZ REMARK 470 LEU A 283 CD1 CD2 REMARK 470 ARG A 286 CD NE CZ NH1 NH2 REMARK 470 ARG A 289 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 306 CZ NH1 NH2 REMARK 470 GLN A 324 CD OE1 NE2 REMARK 470 LYS A 325 CD CE NZ REMARK 470 ILE A 340 CD1 REMARK 470 SER A 371 OG REMARK 470 GLN A 375 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 203 -162.83 -122.58 REMARK 500 SER A 205 -132.09 55.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 409 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 107.1 REMARK 620 3 CYS A 323 SG 113.7 115.9 REMARK 620 4 HIS A 349 ND1 105.5 114.6 99.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 725 A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PG4 A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KWO RELATED DB: PDB REMARK 900 RELATED ID: 4LEQ RELATED DB: PDB REMARK 900 RELATED ID: 4PUK RELATED DB: PDB REMARK 900 RELATED ID: 5I00 RELATED DB: PDB REMARK 900 RELATED ID: 5I02 RELATED DB: PDB REMARK 900 RELATED ID: 5I06 RELATED DB: PDB REMARK 900 RELATED ID: 1P0D RELATED DB: PDB DBREF 5LPO A 1 386 UNP P28720 TGT_ZYMMO 1 386 SEQADV 5LPO GLY A -1 UNP P28720 EXPRESSION TAG SEQADV 5LPO SER A 0 UNP P28720 EXPRESSION TAG SEQADV 5LPO LYS A 312 UNP P28720 THR 312 CONFLICT SEQRES 1 A 388 GLY SER MET VAL GLU ALA THR ALA GLN GLU THR ASP ARG SEQRES 2 A 388 PRO ARG PHE SER PHE SER ILE ALA ALA ARG GLU GLY LYS SEQRES 3 A 388 ALA ARG THR GLY THR ILE GLU MET LYS ARG GLY VAL ILE SEQRES 4 A 388 ARG THR PRO ALA PHE MET PRO VAL GLY THR ALA ALA THR SEQRES 5 A 388 VAL LYS ALA LEU LYS PRO GLU THR VAL ARG ALA THR GLY SEQRES 6 A 388 ALA ASP ILE ILE LEU GLY ASN THR TYR HIS LEU MET LEU SEQRES 7 A 388 ARG PRO GLY ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU SEQRES 8 A 388 HIS SER PHE MET GLY TRP ASP ARG PRO ILE LEU THR ASP SEQRES 9 A 388 SER GLY GLY TYR GLN VAL MET SER LEU SER SER LEU THR SEQRES 10 A 388 LYS GLN SER GLU GLU GLY VAL THR PHE LYS SER HIS LEU SEQRES 11 A 388 ASP GLY SER ARG HIS MET LEU SER PRO GLU ARG SER ILE SEQRES 12 A 388 GLU ILE GLN HIS LEU LEU GLY SER ASP ILE VAL MET ALA SEQRES 13 A 388 PHE ASP GLU CYS THR PRO TYR PRO ALA THR PRO SER ARG SEQRES 14 A 388 ALA ALA SER SER MET GLU ARG SER MET ARG TRP ALA LYS SEQRES 15 A 388 ARG SER ARG ASP ALA PHE ASP SER ARG LYS GLU GLN ALA SEQRES 16 A 388 GLU ASN ALA ALA LEU PHE GLY ILE GLN GLN GLY SER VAL SEQRES 17 A 388 PHE GLU ASN LEU ARG GLN GLN SER ALA ASP ALA LEU ALA SEQRES 18 A 388 GLU ILE GLY PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA SEQRES 19 A 388 VAL GLY GLU GLY GLN ASP GLU MET PHE ARG VAL LEU ASP SEQRES 20 A 388 PHE SER VAL PRO MET LEU PRO ASP ASP LYS PRO HIS TYR SEQRES 21 A 388 LEU MET GLY VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA SEQRES 22 A 388 VAL GLU ARG GLY ILE ASP MET PHE ASP CYS VAL LEU PRO SEQRES 23 A 388 THR ARG SER GLY ARG ASN GLY GLN ALA PHE THR TRP ASP SEQRES 24 A 388 GLY PRO ILE ASN ILE ARG ASN ALA ARG PHE SER GLU ASP SEQRES 25 A 388 LEU LYS PRO LEU ASP SER GLU CYS HIS CYS ALA VAL CYS SEQRES 26 A 388 GLN LYS TRP SER ARG ALA TYR ILE HIS HIS LEU ILE ARG SEQRES 27 A 388 ALA GLY GLU ILE LEU GLY ALA MET LEU MET THR GLU HIS SEQRES 28 A 388 ASN ILE ALA PHE TYR GLN GLN LEU MET GLN LYS ILE ARG SEQRES 29 A 388 ASP SER ILE SER GLU GLY ARG PHE SER GLN PHE ALA GLN SEQRES 30 A 388 ASP PHE ARG ALA ARG TYR PHE ALA ARG ASN SER HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET ZN A 406 1 HET 725 A 407 30 HET EDO A 408 4 HET PG4 A 409 12 HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETNAM 725 6-AMINO-2-(METHYLAMINO)-4-(2-((2R,3R,4R,5R)-3,4,5- HETNAM 2 725 TRIMETHOXYTETRAHYDROFURAN-2-YL)ETHYL)-1H-IMIDAZO[4,5- HETNAM 3 725 G]QUINAZOLIN-8(7H)-ONE HETNAM EDO 1,2-ETHANEDIOL HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GOL 5(C3 H8 O3) FORMUL 7 ZN ZN 2+ FORMUL 8 725 C19 H26 N6 O5 FORMUL 9 EDO C2 H6 O2 FORMUL 10 PG4 C8 H18 O5 FORMUL 11 HOH *281(H2 O) HELIX 1 AA1 ASN A 70 ARG A 77 1 8 HELIX 2 AA2 GLY A 79 LEU A 86 1 8 HELIX 3 AA3 GLY A 88 GLY A 94 1 7 HELIX 4 AA4 GLY A 104 SER A 112 1 9 HELIX 5 AA5 SER A 136 GLY A 148 1 13 HELIX 6 AA6 THR A 164 SER A 188 1 25 HELIX 7 AA7 ARG A 189 ALA A 196 1 8 HELIX 8 AA8 PHE A 207 GLY A 222 1 16 HELIX 9 AA9 GLY A 236 VAL A 248 1 13 HELIX 10 AB1 PRO A 249 LEU A 251 5 3 HELIX 11 AB2 LYS A 264 GLU A 273 1 10 HELIX 12 AB3 VAL A 282 ASN A 290 1 9 HELIX 13 AB4 ASN A 304 SER A 308 5 5 HELIX 14 AB5 CYS A 320 TRP A 326 1 7 HELIX 15 AB6 SER A 327 ALA A 337 1 11 HELIX 16 AB7 GLU A 339 GLU A 367 1 29 HELIX 17 AB8 ARG A 369 PHE A 382 1 14 SHEET 1 AA1 3 SER A 15 GLU A 22 0 SHEET 2 AA1 3 ALA A 25 MET A 32 -1 O GLU A 31 N SER A 15 SHEET 3 AA1 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 AA2 8 ALA A 41 PHE A 42 0 SHEET 2 AA2 8 MET A 278 PHE A 279 1 O PHE A 279 N ALA A 41 SHEET 3 AA2 8 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 AA2 8 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 AA2 8 ALA A 197 GLN A 202 1 N GLY A 200 O ALA A 227 SHEET 6 AA2 8 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 AA2 8 ILE A 99 THR A 101 1 N ILE A 99 O ILE A 151 SHEET 8 AA2 8 ILE A 67 GLY A 69 1 N ILE A 67 O LEU A 100 SHEET 1 AA3 3 LYS A 116 GLN A 117 0 SHEET 2 AA3 3 VAL A 122 LYS A 125 -1 O THR A 123 N LYS A 116 SHEET 3 AA3 3 ARG A 132 LEU A 135 -1 O LEU A 135 N VAL A 122 SHEET 1 AA4 2 GLN A 292 ALA A 293 0 SHEET 2 AA4 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK SG CYS A 318 ZN ZN A 406 1555 1555 2.32 LINK SG CYS A 320 ZN ZN A 406 1555 1555 2.32 LINK SG CYS A 323 ZN ZN A 406 1555 1555 2.32 LINK ND1 HIS A 349 ZN ZN A 406 1555 1555 2.11 CISPEP 1 THR A 39 PRO A 40 0 0.85 CISPEP 2 ARG A 77 PRO A 78 0 2.25 CISPEP 3 TYR A 161 PRO A 162 0 -2.12 CISPEP 4 VAL A 262 GLY A 263 0 1.24 SITE 1 AC1 7 GLY A 46 ALA A 49 VAL A 51 MET A 93 SITE 2 AC1 7 TYR A 330 LEU A 341 HOH A 536 SITE 1 AC2 7 GLN A 117 SER A 118 ARG A 174 PRO A 252 SITE 2 AC2 7 ASP A 254 LYS A 255 HOH A 524 SITE 1 AC3 9 THR A 27 GLY A 28 THR A 29 ARG A 38 SITE 2 AC3 9 THR A 39 ARG A 362 SER A 366 GOL A 404 SITE 3 AC3 9 HOH A 510 SITE 1 AC4 7 ASN A 304 GLN A 359 ARG A 362 ASP A 363 SITE 2 AC4 7 SER A 366 GOL A 403 HOH A 604 SITE 1 AC5 7 HIS A 145 LEU A 146 SER A 188 ARG A 189 SITE 2 AC5 7 LYS A 190 HOH A 576 HOH A 594 SITE 1 AC6 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC7 18 LEU A 100 ASP A 102 SER A 103 TYR A 106 SITE 2 AC7 18 ASP A 156 CYS A 158 ILE A 201 GLN A 203 SITE 3 AC7 18 GLY A 229 GLY A 230 LEU A 231 ALA A 232 SITE 4 AC7 18 TYR A 258 MET A 260 GLY A 261 ASP A 280 SITE 5 AC7 18 HOH A 542 HOH A 585 SITE 1 AC8 6 ARG A 34 HIS A 145 SER A 149 HOH A 529 SITE 2 AC8 6 HOH A 547 HOH A 550 SITE 1 AC9 11 SER A 15 PHE A 16 SER A 17 ILE A 18 SITE 2 AC9 11 GLU A 119 ARG A 174 ARG A 177 ASP A 254 SITE 3 AC9 11 LYS A 255 HOH A 525 HOH A 737 CRYST1 84.662 64.819 71.241 90.00 93.53 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011812 0.000000 0.000730 0.00000 SCALE2 0.000000 0.015428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014064 0.00000