HEADER TRANSFERASE 15-AUG-16 5LPY TITLE CRYSTAL STRUCTURE OF THE BRI1 KINASE DOMAIN (865-1160) IN COMPLEX WITH TITLE 2 ATP FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN BRASSINOSTEROID INSENSITIVE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATBRI1,BRASSINOSTEROID LRR RECEPTOR KINASE; COMPND 5 EC: 2.7.10.1,2.7.11.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: BRI1, AT4G39400, F23K16.30; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMH-HT KEYWDS BRASSINOSTEROID RECEPTOR, KINASE DOMAIN, DUAL-SPECIFICIFY KINASE, KEYWDS 2 MEMBRANE RECEPTOR KINASE, PLASMA MEMBRANE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BOJAR,J.MARTINEZ,M.HOTHORN REVDAT 2 10-JAN-24 5LPY 1 LINK REVDAT 1 24-AUG-16 5LPY 0 SPRSDE 24-AUG-16 5LPY 4OAB JRNL AUTH D.BOJAR,J.MARTINEZ,M.HOTHORN JRNL TITL CRYSTAL STRUCTURE OF THE BRI1 KINASE DOMAIN (865-1160) IN JRNL TITL 2 COMPLEX WITH ATP FROM ARABIDOPSIS THALIANA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.BOJAR,J.MARTINEZ,J.SANTIAGO,V.RYBIN,R.BAYLISS,M.HOTHORN REMARK 1 TITL CRYSTAL STRUCTURES OF THE PHOSPHORYLATED BRI1 KINASE DOMAIN REMARK 1 TITL 2 AND IMPLICATIONS FOR BRASSINOSTEROID SIGNAL INITIATION. REMARK 1 REF PLANT J. V. 78 31 2014 REMARK 1 REFN ESSN 1365-313X REMARK 1 PMID 24461462 REMARK 1 DOI 10.1111/TPJ.12445 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17190 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 877 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6838 - 4.1789 1.00 2806 143 0.1855 0.2226 REMARK 3 2 4.1789 - 3.3173 1.00 2709 146 0.1969 0.2429 REMARK 3 3 3.3173 - 2.8980 1.00 2749 126 0.2171 0.2966 REMARK 3 4 2.8980 - 2.6331 1.00 2682 146 0.2240 0.2601 REMARK 3 5 2.6331 - 2.4444 1.00 2705 164 0.2438 0.3082 REMARK 3 6 2.4444 - 2.3003 0.99 2662 152 0.2688 0.3414 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2261 REMARK 3 ANGLE : 0.714 3072 REMARK 3 CHIRALITY : 0.043 342 REMARK 3 PLANARITY : 0.003 384 REMARK 3 DIHEDRAL : 12.614 1338 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 866:969) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7328 35.4907 17.5929 REMARK 3 T TENSOR REMARK 3 T11: 0.4827 T22: 0.6369 REMARK 3 T33: 0.6323 T12: 0.0611 REMARK 3 T13: 0.0105 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 4.9522 L22: 7.9978 REMARK 3 L33: 4.2586 L12: -3.0598 REMARK 3 L13: -2.1675 L23: 2.6403 REMARK 3 S TENSOR REMARK 3 S11: 0.1566 S12: -0.1650 S13: 0.6379 REMARK 3 S21: -0.4075 S22: 0.1699 S23: 0.0182 REMARK 3 S31: -0.2705 S32: 0.2190 S33: -0.2563 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 970:1086) REMARK 3 ORIGIN FOR THE GROUP (A): 42.5325 20.4284 15.2049 REMARK 3 T TENSOR REMARK 3 T11: 0.5977 T22: 0.3715 REMARK 3 T33: 0.4875 T12: 0.0813 REMARK 3 T13: -0.0054 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 8.1918 L22: 6.9758 REMARK 3 L33: 4.8012 L12: -0.1948 REMARK 3 L13: -1.6450 L23: -0.0402 REMARK 3 S TENSOR REMARK 3 S11: -0.2037 S12: -0.3020 S13: -0.2030 REMARK 3 S21: 0.1471 S22: 0.2968 S23: -0.1688 REMARK 3 S31: -0.2334 S32: 0.1611 S33: -0.1013 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1095:1116) REMARK 3 ORIGIN FOR THE GROUP (A): 52.6504 10.3738 29.9518 REMARK 3 T TENSOR REMARK 3 T11: 1.2989 T22: 1.4126 REMARK 3 T33: 0.8775 T12: 0.1638 REMARK 3 T13: -0.3235 T23: 0.4116 REMARK 3 L TENSOR REMARK 3 L11: 6.0036 L22: 4.5491 REMARK 3 L33: 9.5856 L12: 4.0662 REMARK 3 L13: -4.7055 L23: 0.0724 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: -2.2659 S13: -1.6141 REMARK 3 S21: 1.5087 S22: -0.0368 S23: -0.9752 REMARK 3 S31: -0.6448 S32: 1.2440 S33: 0.2064 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1117:1124) REMARK 3 ORIGIN FOR THE GROUP (A): 41.4283 2.9797 35.7611 REMARK 3 T TENSOR REMARK 3 T11: 1.2858 T22: 1.3427 REMARK 3 T33: 1.2761 T12: 0.1425 REMARK 3 T13: -0.0253 T23: 0.7047 REMARK 3 L TENSOR REMARK 3 L11: 2.8241 L22: 4.4680 REMARK 3 L33: 8.4673 L12: 2.3962 REMARK 3 L13: 1.3345 L23: 2.0631 REMARK 3 S TENSOR REMARK 3 S11: 0.3267 S12: -1.2860 S13: -1.0345 REMARK 3 S21: 0.2421 S22: -0.5842 S23: -0.5649 REMARK 3 S31: 1.4960 S32: 1.3300 S33: 0.4045 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1125:1160) REMARK 3 ORIGIN FOR THE GROUP (A): 45.5251 6.4959 15.9334 REMARK 3 T TENSOR REMARK 3 T11: 0.7073 T22: 0.4472 REMARK 3 T33: 0.9705 T12: 0.1734 REMARK 3 T13: 0.0502 T23: 0.0666 REMARK 3 L TENSOR REMARK 3 L11: 3.7205 L22: 3.5552 REMARK 3 L33: 3.4285 L12: 0.8215 REMARK 3 L13: 2.0628 L23: 0.0133 REMARK 3 S TENSOR REMARK 3 S11: -0.4376 S12: -0.3687 S13: -1.6222 REMARK 3 S21: 0.6155 S22: 0.4342 S23: -0.5359 REMARK 3 S31: 0.0599 S32: -0.0315 S33: 0.0298 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LPY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200001182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-AUG-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000040 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17194 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 44.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 36.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3UIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.43 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 20K/MME 550 MORPHEUS MIX, 0.12 REMARK 280 M ETH GLYCOL MIX, 0.1 M HEPES PH 7.5 SOAKED WITH 30 MM ATP IN REMARK 280 XTAL CONDITION (AROUND 3 MIN), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.26533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.63267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.26533 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.63267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 865 REMARK 465 LYS A 866 REMARK 465 ASP A 1087 REMARK 465 SER A 1088 REMARK 465 PRO A 1089 REMARK 465 ASP A 1090 REMARK 465 PHE A 1091 REMARK 465 GLY A 1092 REMARK 465 ASP A 1093 REMARK 465 ASN A 1094 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 916 CG1 CG2 REMARK 470 SER A 917 OG REMARK 470 GLN A 919 CG CD OE1 NE2 REMARK 470 GLU A 929 CG CD OE1 OE2 REMARK 470 LYS A 947 CG CD CE NZ REMARK 470 VAL A 948 CG1 CG2 REMARK 470 ASP A 950 CG OD1 OD2 REMARK 470 ASP A 970 CG OD1 OD2 REMARK 470 LYS A 972 CG CD CE NZ REMARK 470 LYS A 973 CG CD CE NZ REMARK 470 VAL A 976 CG1 CG2 REMARK 470 LYS A 977 CG CD CE NZ REMARK 470 MET A1037 CG SD CE REMARK 470 LYS A1101 CG CD CE NZ REMARK 470 GLN A1102 CG CD OE1 NE2 REMARK 470 HIS A1103 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A1105 CG CD CE NZ REMARK 470 LEU A1106 CG CD1 CD2 REMARK 470 ARG A1107 CG CD NE CZ NH1 NH2 REMARK 470 ILE A1108 CG1 CG2 CD1 REMARK 470 SER A1109 OG REMARK 470 ASP A1110 CG OD1 OD2 REMARK 470 ILE A1125 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CA GLY A 893 O3P SEP A 1060 3665 1.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 930 -84.31 -120.76 REMARK 500 HIS A 969 78.11 -112.14 REMARK 500 ARG A1008 -1.82 77.86 REMARK 500 ASP A1009 40.37 -148.55 REMARK 500 ASP A1027 82.56 60.37 REMARK 500 LEU A1106 -103.99 -107.50 REMARK 500 ASP A1120 119.64 -170.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 1200 DBREF 5LPY A 865 1160 UNP O22476 BRI1_ARATH 865 1160 SEQADV 5LPY ALA A 872 UNP O22476 THR 872 ENGINEERED MUTATION SEQRES 1 A 296 GLU LYS PRO LEU ARG LYS LEU ALA PHE ALA ASP LEU LEU SEQRES 2 A 296 GLN ALA THR ASN GLY PHE HIS ASN ASP SER LEU ILE GLY SEQRES 3 A 296 SER GLY GLY PHE GLY ASP VAL TYR LYS ALA ILE LEU LYS SEQRES 4 A 296 ASP GLY SER ALA VAL ALA ILE LYS LYS LEU ILE HIS VAL SEQRES 5 A 296 SER GLY GLN GLY ASP ARG GLU PHE MET ALA GLU MET GLU SEQRES 6 A 296 THR ILE GLY LYS ILE LYS HIS ARG ASN LEU VAL PRO LEU SEQRES 7 A 296 LEU GLY TYR CYS LYS VAL GLY ASP GLU ARG LEU LEU VAL SEQRES 8 A 296 TYR GLU PHE MET LYS TYR GLY SER LEU GLU ASP VAL LEU SEQRES 9 A 296 HIS ASP PRO LYS LYS ALA GLY VAL LYS LEU ASN TRP SER SEQRES 10 A 296 THR ARG ARG LYS ILE ALA ILE GLY SER ALA ARG GLY LEU SEQRES 11 A 296 ALA PHE LEU HIS HIS ASN CYS SER PRO HIS ILE ILE HIS SEQRES 12 A 296 ARG ASP MET LYS SER SER ASN VAL LEU LEU ASP GLU ASN SEQRES 13 A 296 LEU GLU ALA ARG VAL SER ASP PHE GLY MET ALA ARG LEU SEQRES 14 A 296 MET SER ALA MET ASP TPO HIS LEU SEP VAL SEP THR LEU SEQRES 15 A 296 ALA GLY THR PRO GLY TYR VAL PRO PRO GLU TYR TYR GLN SEQRES 16 A 296 SEP PHE ARG CYS SER THR LYS GLY ASP VAL TYR SER TYR SEQRES 17 A 296 GLY VAL VAL LEU LEU GLU LEU LEU THR GLY LYS ARG PRO SEQRES 18 A 296 THR ASP SER PRO ASP PHE GLY ASP ASN ASN LEU VAL GLY SEQRES 19 A 296 TRP VAL LYS GLN HIS ALA LYS LEU ARG ILE SER ASP VAL SEQRES 20 A 296 PHE ASP PRO GLU LEU MET LYS GLU ASP PRO ALA LEU GLU SEQRES 21 A 296 ILE GLU LEU LEU GLN HIS LEU LYS VAL ALA VAL ALA CYS SEQRES 22 A 296 LEU ASP ASP ARG ALA TRP ARG ARG PRO THR MET VAL GLN SEQRES 23 A 296 VAL MET ALA MET PHE LYS GLU ILE GLN ALA MODRES 5LPY TPO A 1039 THR MODIFIED RESIDUE MODRES 5LPY SEP A 1042 SER MODIFIED RESIDUE MODRES 5LPY SEP A 1044 SER MODIFIED RESIDUE MODRES 5LPY SEP A 1060 SER MODIFIED RESIDUE HET TPO A1039 11 HET SEP A1042 10 HET SEP A1044 10 HET SEP A1060 10 HET ATP A1200 31 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 1 SEP 3(C3 H8 N O6 P) FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 HOH *10(H2 O) HELIX 1 AA1 ALA A 872 THR A 880 1 9 HELIX 2 AA2 HIS A 884 ASP A 886 5 3 HELIX 3 AA3 GLY A 918 THR A 930 1 13 HELIX 4 AA4 ILE A 931 ILE A 934 5 4 HELIX 5 AA5 SER A 963 HIS A 969 1 7 HELIX 6 AA6 ASP A 970 ALA A 974 5 5 HELIX 7 AA7 ASN A 979 HIS A 999 1 21 HELIX 8 AA8 LYS A 1011 SER A 1013 5 3 HELIX 9 AA9 PRO A 1054 GLN A 1059 5 6 HELIX 10 AB1 SER A 1064 GLY A 1082 1 19 HELIX 11 AB2 LEU A 1096 LYS A 1105 1 10 HELIX 12 AB3 ARG A 1107 VAL A 1111 5 5 HELIX 13 AB4 ASP A 1113 ASP A 1120 1 8 HELIX 14 AB5 LEU A 1123 LEU A 1138 1 16 HELIX 15 AB6 THR A 1147 ALA A 1160 1 14 SHEET 1 AA1 6 ARG A 869 LYS A 870 0 SHEET 2 AA1 6 LEU A 942 VAL A 948 1 O LEU A 943 N ARG A 869 SHEET 3 AA1 6 GLU A 951 GLU A 957 -1 O VAL A 955 N GLY A 944 SHEET 4 AA1 6 ALA A 907 LEU A 913 -1 N LEU A 913 O ARG A 952 SHEET 5 AA1 6 GLY A 895 ILE A 901 -1 N TYR A 898 O ILE A 910 SHEET 6 AA1 6 LEU A 888 GLY A 892 -1 N ILE A 889 O VAL A 897 SHEET 1 AA2 2 HIS A1004 ILE A1006 0 SHEET 2 AA2 2 ARG A1032 MET A1034 -1 O ARG A1032 N ILE A1006 SHEET 1 AA3 2 VAL A1015 LEU A1017 0 SHEET 2 AA3 2 ALA A1023 VAL A1025 -1 O ARG A1024 N LEU A1016 SHEET 1 AA4 2 LEU A1041 SEP A1042 0 SHEET 2 AA4 2 ARG A1062 CYS A1063 -1 O CYS A1063 N LEU A1041 LINK N GLY A 893 O3P SEP A1060 1555 3665 1.30 LINK C ASP A1038 N TPO A1039 1555 1555 1.33 LINK C TPO A1039 N HIS A1040 1555 1555 1.33 LINK C LEU A1041 N SEP A1042 1555 1555 1.32 LINK C SEP A1042 N VAL A1043 1555 1555 1.33 LINK C VAL A1043 N SEP A1044 1555 1555 1.33 LINK C SEP A1044 N THR A1045 1555 1555 1.33 LINK C GLN A1059 N SEP A1060 1555 1555 1.33 LINK C SEP A1060 N PHE A1061 1555 1555 1.33 CISPEP 1 SER A 1002 PRO A 1003 0 1.26 SITE 1 AC1 14 PHE A 894 ALA A 909 LYS A 911 TYR A 956 SITE 2 AC1 14 GLU A 957 MET A 959 SER A 963 ASP A 966 SITE 3 AC1 14 LYS A1011 SER A1013 ASN A1014 LEU A1016 SITE 4 AC1 14 ASP A1027 HOH A1301 CRYST1 115.823 115.823 49.898 90.00 90.00 120.00 P 62 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008634 0.004985 0.000000 0.00000 SCALE2 0.000000 0.009970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020041 0.00000