HEADER TRANSFERASE 15-AUG-16 5LPZ TITLE CRYSTAL STRUCTURE OF THE BRI1 KINASE DOMAIN (865-1196) IN COMPLEX WITH TITLE 2 ADP FROM ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN BRASSINOSTEROID INSENSITIVE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 865-1196; COMPND 5 SYNONYM: ATBRI1,BRASSINOSTEROID LRR RECEPTOR KINASE; COMPND 6 EC: 2.7.10.1,2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: BRI1, AT4G39400, F23K16.30; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMH-HT KEYWDS BRASSINOSTEROID RECEPTOR, KINASE DOMAIN, DUAL-SPECIFICIFY KINASE, KEYWDS 2 MEMBRANE RECEPTOR KINASE, PLASMA MEMBRANE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.BOJAR,J.MARTINEZ,M.HOTHORN REVDAT 4 09-OCT-24 5LPZ 1 REMARK REVDAT 3 10-JAN-24 5LPZ 1 REMARK REVDAT 2 31-AUG-16 5LPZ 1 REVDAT 1 24-AUG-16 5LPZ 0 SPRSDE 24-AUG-16 5LPZ 4OA2 JRNL AUTH D.BOJAR,J.MARTINEZ,J.SANTIAGO,V.RYBIN,R.BAYLISS,M.HOTHORN JRNL TITL CRYSTAL STRUCTURES OF THE PHOSPHORYLATED BRI1 KINASE DOMAIN JRNL TITL 2 AND IMPLICATIONS FOR BRASSINOSTEROID SIGNAL INITIATION. JRNL REF PLANT J. V. 78 31 2014 JRNL REFN ESSN 1365-313X JRNL PMID 24461462 JRNL DOI 10.1111/TPJ.12445 REMARK 2 REMARK 2 RESOLUTION. 2.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.560 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 14055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.4728 - 5.1234 1.00 2912 137 0.1835 0.2048 REMARK 3 2 5.1234 - 4.0789 1.00 2890 156 0.1780 0.1956 REMARK 3 3 4.0789 - 3.5669 1.00 2897 153 0.2175 0.2770 REMARK 3 4 3.5669 - 3.2424 1.00 2905 129 0.2592 0.3222 REMARK 3 5 3.2424 - 3.0109 1.00 2945 125 0.2760 0.2823 REMARK 3 6 3.0109 - 2.8340 1.00 2876 163 0.2970 0.3530 REMARK 3 7 2.8340 - 2.6924 1.00 2924 133 0.3000 0.2926 REMARK 3 8 2.6924 - 2.5755 1.00 2852 180 0.3085 0.3275 REMARK 3 9 2.5755 - 2.4765 0.89 2610 134 0.3394 0.3369 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2246 REMARK 3 ANGLE : 0.580 3049 REMARK 3 CHIRALITY : 0.038 344 REMARK 3 PLANARITY : 0.003 382 REMARK 3 DIHEDRAL : 10.721 1339 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 866:969) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9399 35.6614 17.4680 REMARK 3 T TENSOR REMARK 3 T11: 0.4545 T22: 0.4915 REMARK 3 T33: 0.6360 T12: 0.0476 REMARK 3 T13: 0.0512 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 6.7845 L22: 6.3946 REMARK 3 L33: 5.8570 L12: -3.7872 REMARK 3 L13: -4.7127 L23: 5.2905 REMARK 3 S TENSOR REMARK 3 S11: 0.4978 S12: -0.4810 S13: 0.7639 REMARK 3 S21: -0.3410 S22: 0.2264 S23: -0.0965 REMARK 3 S31: -0.6236 S32: 0.2751 S33: -0.2646 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 970:1086) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9833 20.5178 15.3933 REMARK 3 T TENSOR REMARK 3 T11: 0.5605 T22: 0.3827 REMARK 3 T33: 0.6533 T12: 0.1212 REMARK 3 T13: -0.0257 T23: -0.0626 REMARK 3 L TENSOR REMARK 3 L11: 7.8515 L22: 6.9068 REMARK 3 L33: 3.8139 L12: -1.4027 REMARK 3 L13: -1.2215 L23: 0.0656 REMARK 3 S TENSOR REMARK 3 S11: -0.3003 S12: -0.3794 S13: -0.6239 REMARK 3 S21: 0.3970 S22: 0.3263 S23: -0.3090 REMARK 3 S31: -0.0268 S32: 0.2453 S33: -0.0284 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1095:1116) REMARK 3 ORIGIN FOR THE GROUP (A): 52.8756 10.0178 30.0503 REMARK 3 T TENSOR REMARK 3 T11: 1.3977 T22: 1.4186 REMARK 3 T33: 1.4728 T12: 0.1459 REMARK 3 T13: -0.3015 T23: 0.4434 REMARK 3 L TENSOR REMARK 3 L11: 2.9802 L22: 5.2935 REMARK 3 L33: 6.4395 L12: -0.7430 REMARK 3 L13: -0.1398 L23: -0.8322 REMARK 3 S TENSOR REMARK 3 S11: -0.4812 S12: -1.9806 S13: -1.8870 REMARK 3 S21: 1.9472 S22: -0.4584 S23: -1.6794 REMARK 3 S31: -0.0559 S32: 2.7066 S33: 0.6801 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1117:1124) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8396 2.4757 35.6353 REMARK 3 T TENSOR REMARK 3 T11: 1.7673 T22: 1.1911 REMARK 3 T33: 1.6849 T12: 0.3010 REMARK 3 T13: 0.0878 T23: 0.5352 REMARK 3 L TENSOR REMARK 3 L11: 5.8043 L22: 7.6280 REMARK 3 L33: 2.8586 L12: 1.7137 REMARK 3 L13: -0.0012 L23: 4.3958 REMARK 3 S TENSOR REMARK 3 S11: 1.0304 S12: -0.2643 S13: -0.3758 REMARK 3 S21: 0.0054 S22: -0.8086 S23: 1.0671 REMARK 3 S31: 2.4253 S32: 1.1251 S33: -0.1070 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 1126:1160) REMARK 3 ORIGIN FOR THE GROUP (A): 45.9799 6.5011 15.5857 REMARK 3 T TENSOR REMARK 3 T11: 0.9152 T22: 0.5473 REMARK 3 T33: 1.3798 T12: 0.2623 REMARK 3 T13: 0.1247 T23: 0.0925 REMARK 3 L TENSOR REMARK 3 L11: 3.6025 L22: 5.5881 REMARK 3 L33: 3.3483 L12: 2.2596 REMARK 3 L13: 1.8059 L23: -0.2153 REMARK 3 S TENSOR REMARK 3 S11: -0.8693 S12: -0.7747 S13: -2.3524 REMARK 3 S21: 1.1588 S22: 0.6296 S23: -0.2878 REMARK 3 S31: 0.6144 S32: 0.1641 S33: 0.0732 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LPZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200001186. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918380 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14064 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.480 REMARK 200 RESOLUTION RANGE LOW (A) : 19.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 20.02 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 18.66 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.630 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3UIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 37.5% MPD/PEG 1000/PEG 3350 MORPHEUS REMARK 280 MIX, 0.1 M AMINO ACIDS MIX, 0.1 M MOPS/HEPES PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.70533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.85267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.70533 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 16.85267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 865 REMARK 465 ASP A 1087 REMARK 465 SER A 1088 REMARK 465 PRO A 1089 REMARK 465 ASP A 1090 REMARK 465 PHE A 1091 REMARK 465 GLY A 1092 REMARK 465 ASP A 1093 REMARK 465 ASN A 1094 REMARK 465 ILE A 1125 REMARK 465 GLY A 1161 REMARK 465 SER A 1162 REMARK 465 GLY A 1163 REMARK 465 ILE A 1164 REMARK 465 ASP A 1165 REMARK 465 SER A 1166 REMARK 465 GLN A 1167 REMARK 465 SER A 1168 REMARK 465 THR A 1169 REMARK 465 ILE A 1170 REMARK 465 ARG A 1171 REMARK 465 SER A 1172 REMARK 465 ILE A 1173 REMARK 465 GLU A 1174 REMARK 465 ASP A 1175 REMARK 465 GLY A 1176 REMARK 465 GLY A 1177 REMARK 465 PHE A 1178 REMARK 465 SER A 1179 REMARK 465 THR A 1180 REMARK 465 ILE A 1181 REMARK 465 GLU A 1182 REMARK 465 MET A 1183 REMARK 465 VAL A 1184 REMARK 465 ASP A 1185 REMARK 465 MET A 1186 REMARK 465 SER A 1187 REMARK 465 ILE A 1188 REMARK 465 LYS A 1189 REMARK 465 GLU A 1190 REMARK 465 VAL A 1191 REMARK 465 PRO A 1192 REMARK 465 GLU A 1193 REMARK 465 GLY A 1194 REMARK 465 LYS A 1195 REMARK 465 LEU A 1196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 866 CG CD CE NZ REMARK 470 PHE A 894 CG CD1 CD2 CE1 CE2 CZ REMARK 470 HIS A 915 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 919 CG CD OE1 NE2 REMARK 470 ASP A 970 CG OD1 OD2 REMARK 470 LYS A 972 CG CD CE NZ REMARK 470 LYS A 973 CG CD CE NZ REMARK 470 VAL A 976 CG1 CG2 REMARK 470 LYS A 977 CG CD CE NZ REMARK 470 THR A1086 OG1 CG2 REMARK 470 LYS A1101 CG CD CE NZ REMARK 470 GLN A1102 CG CD OE1 NE2 REMARK 470 HIS A1103 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A1105 CG CD CE NZ REMARK 470 LEU A1106 CG CD1 CD2 REMARK 470 ARG A1107 CG CD NE CZ NH1 NH2 REMARK 470 ILE A1108 CG1 CG2 CD1 REMARK 470 SER A1109 OG REMARK 470 ASP A1110 CG OD1 OD2 REMARK 470 LYS A1118 CG CD CE NZ REMARK 470 GLU A1119 CG CD OE1 OE2 REMARK 470 GLU A1124 CG CD OE1 OE2 REMARK 470 GLN A1159 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1317 O HOH A 1318 1.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 894 -52.58 -126.28 REMARK 500 HIS A 915 66.19 60.24 REMARK 500 SER A 917 78.43 -60.96 REMARK 500 THR A 930 -82.03 -110.41 REMARK 500 HIS A 969 78.60 -107.15 REMARK 500 ARG A1008 -2.92 64.90 REMARK 500 ASP A1009 41.61 -149.76 REMARK 500 ASP A1018 -167.13 -78.95 REMARK 500 ASP A1027 71.09 59.45 REMARK 500 VAL A1043 -166.25 -112.65 REMARK 500 LEU A1106 -110.58 -113.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 1200 DBREF 5LPZ A 865 1196 UNP O22476 BRI1_ARATH 865 1196 SEQADV 5LPZ ALA A 872 UNP O22476 THR 872 ENGINEERED MUTATION SEQRES 1 A 332 GLU LYS PRO LEU ARG LYS LEU ALA PHE ALA ASP LEU LEU SEQRES 2 A 332 GLN ALA THR ASN GLY PHE HIS ASN ASP SER LEU ILE GLY SEQRES 3 A 332 SER GLY GLY PHE GLY ASP VAL TYR LYS ALA ILE LEU LYS SEQRES 4 A 332 ASP GLY SER ALA VAL ALA ILE LYS LYS LEU ILE HIS VAL SEQRES 5 A 332 SER GLY GLN GLY ASP ARG GLU PHE MET ALA GLU MET GLU SEQRES 6 A 332 THR ILE GLY LYS ILE LYS HIS ARG ASN LEU VAL PRO LEU SEQRES 7 A 332 LEU GLY TYR CYS LYS VAL GLY ASP GLU ARG LEU LEU VAL SEQRES 8 A 332 TYR GLU PHE MET LYS TYR GLY SER LEU GLU ASP VAL LEU SEQRES 9 A 332 HIS ASP PRO LYS LYS ALA GLY VAL LYS LEU ASN TRP SER SEQRES 10 A 332 THR ARG ARG LYS ILE ALA ILE GLY SER ALA ARG GLY LEU SEQRES 11 A 332 ALA PHE LEU HIS HIS ASN CYS SER PRO HIS ILE ILE HIS SEQRES 12 A 332 ARG ASP MET LYS SER SER ASN VAL LEU LEU ASP GLU ASN SEQRES 13 A 332 LEU GLU ALA ARG VAL SER ASP PHE GLY MET ALA ARG LEU SEQRES 14 A 332 MET SER ALA MET ASP TPO HIS LEU SEP VAL SEP THR LEU SEQRES 15 A 332 ALA GLY THR PRO GLY TYR VAL PRO PRO GLU TYR TYR GLN SEQRES 16 A 332 SER PHE ARG CYS SER THR LYS GLY ASP VAL TYR SER TYR SEQRES 17 A 332 GLY VAL VAL LEU LEU GLU LEU LEU THR GLY LYS ARG PRO SEQRES 18 A 332 THR ASP SER PRO ASP PHE GLY ASP ASN ASN LEU VAL GLY SEQRES 19 A 332 TRP VAL LYS GLN HIS ALA LYS LEU ARG ILE SER ASP VAL SEQRES 20 A 332 PHE ASP PRO GLU LEU MET LYS GLU ASP PRO ALA LEU GLU SEQRES 21 A 332 ILE GLU LEU LEU GLN HIS LEU LYS VAL ALA VAL ALA CYS SEQRES 22 A 332 LEU ASP ASP ARG ALA TRP ARG ARG PRO THR MET VAL GLN SEQRES 23 A 332 VAL MET ALA MET PHE LYS GLU ILE GLN ALA GLY SER GLY SEQRES 24 A 332 ILE ASP SER GLN SER THR ILE ARG SER ILE GLU ASP GLY SEQRES 25 A 332 GLY PHE SER THR ILE GLU MET VAL ASP MET SER ILE LYS SEQRES 26 A 332 GLU VAL PRO GLU GLY LYS LEU MODRES 5LPZ TPO A 1039 THR MODIFIED RESIDUE MODRES 5LPZ SEP A 1042 SER MODIFIED RESIDUE MODRES 5LPZ SEP A 1044 SER MODIFIED RESIDUE HET TPO A1039 11 HET SEP A1042 10 HET SEP A1044 10 HET ADP A1200 27 HETNAM TPO PHOSPHOTHREONINE HETNAM SEP PHOSPHOSERINE HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETSYN TPO PHOSPHONOTHREONINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 HOH *19(H2 O) HELIX 1 AA1 ALA A 872 THR A 880 1 9 HELIX 2 AA2 GLY A 918 THR A 930 1 13 HELIX 3 AA3 LEU A 964 HIS A 969 1 6 HELIX 4 AA4 ASN A 979 HIS A 999 1 21 HELIX 5 AA5 LYS A 1011 SER A 1013 5 3 HELIX 6 AA6 PRO A 1054 GLN A 1059 5 6 HELIX 7 AA7 SER A 1064 GLY A 1082 1 19 HELIX 8 AA8 LEU A 1096 LYS A 1105 1 10 HELIX 9 AA9 ARG A 1107 VAL A 1111 5 5 HELIX 10 AB1 ASP A 1113 ASP A 1120 1 8 HELIX 11 AB2 LEU A 1123 GLU A 1124 5 2 HELIX 12 AB3 GLU A 1126 GLU A 1126 5 1 HELIX 13 AB4 LEU A 1127 LEU A 1138 1 12 HELIX 14 AB5 THR A 1147 ALA A 1160 1 14 SHEET 1 AA1 6 ARG A 869 LYS A 870 0 SHEET 2 AA1 6 LEU A 942 VAL A 948 1 O LEU A 943 N ARG A 869 SHEET 3 AA1 6 GLU A 951 GLU A 957 -1 O VAL A 955 N GLY A 944 SHEET 4 AA1 6 ALA A 907 LEU A 913 -1 N LYS A 911 O LEU A 954 SHEET 5 AA1 6 GLY A 895 ILE A 901 -1 N ASP A 896 O LYS A 912 SHEET 6 AA1 6 LEU A 888 GLY A 890 -1 N GLY A 890 O VAL A 897 SHEET 1 AA2 3 GLY A 962 SER A 963 0 SHEET 2 AA2 3 VAL A1015 LEU A1017 -1 O LEU A1017 N GLY A 962 SHEET 3 AA2 3 ALA A1023 VAL A1025 -1 O ARG A1024 N LEU A1016 SHEET 1 AA3 2 HIS A1004 ILE A1006 0 SHEET 2 AA3 2 ARG A1032 MET A1034 -1 O MET A1034 N HIS A1004 SHEET 1 AA4 2 LEU A1041 SEP A1042 0 SHEET 2 AA4 2 ARG A1062 CYS A1063 -1 O CYS A1063 N LEU A1041 LINK C ASP A1038 N TPO A1039 1555 1555 1.33 LINK C TPO A1039 N HIS A1040 1555 1555 1.33 LINK C LEU A1041 N SEP A1042 1555 1555 1.33 LINK C SEP A1042 N VAL A1043 1555 1555 1.33 LINK C VAL A1043 N SEP A1044 1555 1555 1.33 LINK C SEP A1044 N THR A1045 1555 1555 1.33 CISPEP 1 SER A 1002 PRO A 1003 0 4.77 SITE 1 AC1 17 ILE A 889 PHE A 894 VAL A 897 ALA A 909 SITE 2 AC1 17 TYR A 956 GLU A 957 PHE A 958 MET A 959 SITE 3 AC1 17 SER A 963 ASP A 966 SER A1013 ASN A1014 SITE 4 AC1 17 LEU A1016 ASP A1027 HOH A1301 HOH A1307 SITE 5 AC1 17 HOH A1314 CRYST1 116.833 116.833 50.558 90.00 90.00 120.00 P 62 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008559 0.004942 0.000000 0.00000 SCALE2 0.000000 0.009883 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019779 0.00000