HEADER TRANSFERASE 16-AUG-16 5LQA TITLE RAT CATECHOL O-METHYLTRANSFERASE AT HIGH PH IN COMPLEX WITH A TITLE 2 BISUBSTRATE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATECHOL O-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SOLUBLE FORM, RESIDUES 44-264; COMPND 5 EC: 2.1.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: COMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS METHYLTRANSFERASE, NEUROTRANSMITTER DEGRADATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.EHLER,M.ELLERMANN,M.G.RUDOLPH REVDAT 2 01-MAY-24 5LQA 1 REMARK REVDAT 1 05-OCT-16 5LQA 0 JRNL AUTH M.ELLERMANN,M.G.RUDOLPH JRNL TITL RAT CATECHOL O-METHYLTRANSFERASE AT HIGH PH IN COMPLEX WITH JRNL TITL 2 A BISUBSTRATE INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 64614 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.117 REMARK 3 R VALUE (WORKING SET) : 0.116 REMARK 3 FREE R VALUE : 0.147 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3452 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4136 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2880 REMARK 3 BIN FREE R VALUE SET COUNT : 224 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1679 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 291 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.15000 REMARK 3 B22 (A**2) : 0.39000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.031 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.033 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.023 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.196 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.984 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.978 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5LQA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200001139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70627 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 31.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.90200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: INHOUSE MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULPHATE, CHES, PH 9, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.37950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.17800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.17600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.17800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.37950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.17600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB SER A 24 O HOH A 404 1.56 REMARK 500 OG SER A 24 O HOH A 404 1.67 REMARK 500 OD1 ASP A 44 O HOH A 405 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 436 O HOH A 634 4555 1.77 REMARK 500 O HOH A 456 O HOH A 581 2565 1.94 REMARK 500 O HOH A 666 O HOH A 685 2564 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 3 CB ASP A 3 CG -0.177 REMARK 500 ASP A 110 CB ASP A 110 CG 0.130 REMARK 500 TYR A 130 CE1 TYR A 130 CZ 0.097 REMARK 500 TRP A 143 CB TRP A 143 CG 0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 3 N - CA - CB ANGL. DEV. = -18.3 DEGREES REMARK 500 ASP A 3 OD1 - CG - OD2 ANGL. DEV. = 13.1 DEGREES REMARK 500 ASP A 3 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP A 3 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 ARG A 8 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 11 CG - CD - NE ANGL. DEV. = -19.1 DEGREES REMARK 500 ARG A 11 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 11 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 VAL A 42 CG1 - CB - CG2 ANGL. DEV. = -13.3 DEGREES REMARK 500 ASP A 44 CB - CG - OD2 ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG A 55 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 85 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 TYR A 95 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ASP A 110 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ASP A 131 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 145 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 LYS A 202 CD - CE - NZ ANGL. DEV. = -17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 40 46.23 -84.38 REMARK 500 TYR A 68 -110.88 64.83 REMARK 500 ASP A 133 -78.54 -95.95 REMARK 500 ASP A 141 27.17 -152.64 REMARK 500 HIS A 142 -153.19 -99.29 REMARK 500 SER A 196 -145.63 -153.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 141 OD1 REMARK 620 2 ASP A 169 OD2 92.2 REMARK 620 3 ASN A 170 OD1 93.1 82.6 REMARK 620 4 619 A 302 O34 166.1 101.6 89.2 REMARK 620 5 619 A 302 O32 88.9 166.5 83.9 77.7 REMARK 620 6 HOH A 428 O 90.8 91.0 172.7 88.5 102.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 619 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 307 DBREF 5LQA A 3 215 UNP P22734 COMT_RAT 46 258 SEQRES 1 A 213 ASP THR LYS GLU GLN ARG ILE LEU ARG TYR VAL GLN GLN SEQRES 2 A 213 ASN ALA LYS PRO GLY ASP PRO GLN SER VAL LEU GLU ALA SEQRES 3 A 213 ILE ASP THR TYR CYS THR GLN LYS GLU TRP ALA MET ASN SEQRES 4 A 213 VAL GLY ASP ALA LYS GLY GLN ILE MET ASP ALA VAL ILE SEQRES 5 A 213 ARG GLU TYR SER PRO SER LEU VAL LEU GLU LEU GLY ALA SEQRES 6 A 213 TYR CYS GLY TYR SER ALA VAL ARG MET ALA ARG LEU LEU SEQRES 7 A 213 GLN PRO GLY ALA ARG LEU LEU THR MET GLU MET ASN PRO SEQRES 8 A 213 ASP TYR ALA ALA ILE THR GLN GLN MET LEU ASN PHE ALA SEQRES 9 A 213 GLY LEU GLN ASP LYS VAL THR ILE LEU ASN GLY ALA SER SEQRES 10 A 213 GLN ASP LEU ILE PRO GLN LEU LYS LYS LYS TYR ASP VAL SEQRES 11 A 213 ASP THR LEU ASP MET VAL PHE LEU ASP HIS TRP LYS ASP SEQRES 12 A 213 ARG TYR LEU PRO ASP THR LEU LEU LEU GLU LYS CYS GLY SEQRES 13 A 213 LEU LEU ARG LYS GLY THR VAL LEU LEU ALA ASP ASN VAL SEQRES 14 A 213 ILE VAL PRO GLY THR PRO ASP PHE LEU ALA TYR VAL ARG SEQRES 15 A 213 GLY SER SER SER PHE GLU CYS THR HIS TYR SER SER TYR SEQRES 16 A 213 LEU GLU TYR MET LYS VAL VAL ASP GLY LEU GLU LYS ALA SEQRES 17 A 213 ILE TYR GLN GLY PRO HET NHE A 301 26 HET 619 A 302 40 HET SO4 A 303 5 HET SO4 A 304 5 HET MG A 305 1 HET CL A 306 1 HET CL A 307 1 HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETNAM 619 N-[(E)-3-[(2R,3S,4R,5R)-5-(6-ETHYLAMINOPURIN-9-YL)-3,4- HETNAM 2 619 DIHYDROXY-OXOLAN-2-YL]PROP-2-ENYL]-5-(4-FLUOROPHENYL)- HETNAM 3 619 2,3-DIHYDROXY-BENZAMIDE HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN NHE N-CYCLOHEXYLTAURINE; CHES FORMUL 2 NHE C8 H17 N O3 S FORMUL 3 619 C27 H27 F N6 O6 FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 MG MG 2+ FORMUL 7 CL 2(CL 1-) FORMUL 9 HOH *291(H2 O) HELIX 1 AA1 THR A 4 ALA A 17 1 14 HELIX 2 AA2 ASP A 21 LYS A 36 1 16 HELIX 3 AA3 VAL A 42 SER A 58 1 17 HELIX 4 AA4 GLY A 70 ARG A 78 1 9 HELIX 5 AA5 ASN A 92 GLY A 107 1 16 HELIX 6 AA6 LEU A 108 ASP A 110 5 3 HELIX 7 AA7 ALA A 118 ILE A 123 1 6 HELIX 8 AA8 GLN A 125 TYR A 130 1 6 HELIX 9 AA9 TRP A 143 ASP A 145 5 3 HELIX 10 AB1 ARG A 146 CYS A 157 1 12 HELIX 11 AB2 THR A 176 SER A 186 1 11 SHEET 1 AA1 7 VAL A 112 ASN A 116 0 SHEET 2 AA1 7 ARG A 85 GLU A 90 1 N THR A 88 O LEU A 115 SHEET 3 AA1 7 LEU A 61 LEU A 65 1 N VAL A 62 O LEU A 87 SHEET 4 AA1 7 LEU A 135 LEU A 140 1 O PHE A 139 N LEU A 65 SHEET 5 AA1 7 LEU A 160 ALA A 168 1 O LEU A 167 N VAL A 138 SHEET 6 AA1 7 VAL A 204 TYR A 212 -1 O TYR A 212 N GLY A 163 SHEET 7 AA1 7 PHE A 189 TYR A 197 -1 N SER A 196 O ASP A 205 LINK OD1 ASP A 141 MG MG A 305 1555 1555 2.05 LINK OD2 ASP A 169 MG MG A 305 1555 1555 2.06 LINK OD1 ASN A 170 MG MG A 305 1555 1555 2.14 LINK O34 619 A 302 MG MG A 305 1555 1555 2.08 LINK O32 619 A 302 MG MG A 305 1555 1555 2.15 LINK MG MG A 305 O HOH A 428 1555 1555 2.08 CISPEP 1 VAL A 173 PRO A 174 0 -3.44 CISPEP 2 VAL A 173 PRO A 174 0 -2.54 SITE 1 AC1 15 GLU A 37 TRP A 38 ALA A 96 GLN A 100 SITE 2 AC1 15 THR A 113 ILE A 114 LEU A 115 MET A 201 SITE 3 AC1 15 619 A 302 HOH A 407 HOH A 410 HOH A 412 SITE 4 AC1 15 HOH A 570 HOH A 577 HOH A 582 SITE 1 AC2 32 MET A 40 GLY A 66 TYR A 68 GLU A 90 SITE 2 AC2 32 MET A 91 ASN A 92 TYR A 95 ALA A 97 SITE 3 AC2 32 GLN A 100 GLN A 101 GLY A 117 ALA A 118 SITE 4 AC2 32 SER A 119 GLN A 120 ASP A 141 HIS A 142 SITE 5 AC2 32 TRP A 143 LYS A 144 ARG A 146 ASP A 169 SITE 6 AC2 32 ASN A 170 PRO A 174 LEU A 198 GLU A 199 SITE 7 AC2 32 NHE A 301 MG A 305 HOH A 428 HOH A 479 SITE 8 AC2 32 HOH A 505 HOH A 519 HOH A 532 HOH A 580 SITE 1 AC3 7 ASP A 3 THR A 4 LYS A 5 ARG A 8 SITE 2 AC3 7 HOH A 406 HOH A 491 HOH A 525 SITE 1 AC4 5 PRO A 82 GLY A 83 ARG A 85 LYS A 111 SITE 2 AC4 5 HOH A 621 SITE 1 AC5 5 ASP A 141 ASP A 169 ASN A 170 619 A 302 SITE 2 AC5 5 HOH A 428 SITE 1 AC6 3 ASN A 41 VAL A 42 SER A 72 SITE 1 AC7 5 ASP A 44 ALA A 45 TYR A 200 HOH A 524 SITE 2 AC7 5 HOH A 652 CRYST1 50.759 56.352 78.356 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019701 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017746 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012762 0.00000