HEADER TRANSFERASE 17-AUG-16 5LQS TITLE STRUCTURE OF QUINOLINATE SYNTHASE Y21F MUTANT IN COMPLEX WITH TITLE 2 SUBSTRATE-DERIVED QUINOLINATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUINOLINATE SYNTHASE A; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.72; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA MSB8; SOURCE 3 ORGANISM_TAXID: 243274; SOURCE 4 GENE: NADA, TM_1644; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PT7 KEYWDS NAD BIOSYNTHESIS, IRON SULFUR CLUSTER, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.VOLBEDA,J.C.FONTECILLA-CAMPS REVDAT 5 10-JAN-24 5LQS 1 REMARK REVDAT 4 30-AUG-17 5LQS 1 ATOM REVDAT 3 21-SEP-16 5LQS 1 JRNL REVDAT 2 07-SEP-16 5LQS 1 JRNL REVDAT 1 31-AUG-16 5LQS 0 JRNL AUTH A.VOLBEDA,C.DARNAULT,O.RENOUX,D.REICHMANN,P.AMARA, JRNL AUTH 2 S.OLLAGNIER DE CHOUDENS,J.C.FONTECILLA-CAMPS JRNL TITL CRYSTAL STRUCTURES OF QUINOLINATE SYNTHASE IN COMPLEX WITH A JRNL TITL 2 SUBSTRATE ANALOGUE, THE CONDENSATION INTERMEDIATE, AND JRNL TITL 3 SUBSTRATE-DERIVED PRODUCT. JRNL REF J.AM.CHEM.SOC. V. 138 11802 2016 JRNL REFN ESSN 1520-5126 JRNL PMID 27545412 JRNL DOI 10.1021/JACS.6B05884 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.V.CHERRIER,A.CHAN,C.DARNAULT,D.REICHMANN,P.AMARA, REMARK 1 AUTH 2 S.OLLAGNIER DE CHOUDENS,J.C.FONTECILLA-CAMPS REMARK 1 TITL THE CRYSTAL STRUCTURE OF FE4S4 QUINOLINATE SYNTHASE UNRAVELS REMARK 1 TITL 2 AN ENZYMATIC DEHYDRATION MECHANISM THAT USES TYROSINE AND A REMARK 1 TITL 3 HYDROLASE-TYPE TRIAD. REMARK 1 REF J. AM. CHEM. SOC. V. 136 5253 2014 REMARK 1 REFN ESSN 1520-5126 REMARK 1 PMID 24650327 REMARK 1 DOI 10.1021/JA501431B REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 21850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1175 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1554 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.41 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 111 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2401 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 285 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : -0.30000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.114 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.854 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2611 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2624 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3545 ; 1.574 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6100 ; 1.085 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 5.640 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;35.833 ;24.811 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 512 ;13.553 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.888 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 407 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2845 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 526 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1261 ; 1.400 ; 1.181 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1260 ; 1.399 ; 1.177 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1584 ; 2.213 ; 2.205 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1585 ; 2.222 ; 2.208 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1350 ; 1.931 ; 1.455 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1350 ; 1.931 ; 1.455 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1936 ; 3.182 ; 2.600 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3069 ; 6.234 ; 6.532 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2921 ; 5.974 ; 6.100 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -4 A 78 REMARK 3 RESIDUE RANGE : A 257 A 279 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5432 -4.8061 24.5192 REMARK 3 T TENSOR REMARK 3 T11: 0.0394 T22: 0.0598 REMARK 3 T33: 0.0859 T12: 0.0106 REMARK 3 T13: -0.0018 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.5594 L22: 0.3299 REMARK 3 L33: 0.9789 L12: 0.3669 REMARK 3 L13: -0.1610 L23: 0.1238 REMARK 3 S TENSOR REMARK 3 S11: -0.0082 S12: -0.0194 S13: 0.0138 REMARK 3 S21: 0.0035 S22: 0.0048 S23: -0.0180 REMARK 3 S31: 0.0246 S32: -0.0750 S33: 0.0034 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 165 REMARK 3 RESIDUE RANGE : A 280 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): 24.1558 7.8337 17.3971 REMARK 3 T TENSOR REMARK 3 T11: 0.0075 T22: 0.0518 REMARK 3 T33: 0.1006 T12: -0.0106 REMARK 3 T13: -0.0023 T23: -0.0357 REMARK 3 L TENSOR REMARK 3 L11: 0.7613 L22: 0.7452 REMARK 3 L33: 2.4745 L12: 0.1866 REMARK 3 L13: -0.1027 L23: 0.4992 REMARK 3 S TENSOR REMARK 3 S11: 0.0115 S12: 0.0191 S13: 0.0370 REMARK 3 S21: 0.0052 S22: 0.1301 S23: -0.0375 REMARK 3 S31: -0.0038 S32: 0.1113 S33: -0.1416 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 171 A 251 REMARK 3 ORIGIN FOR THE GROUP (A): 5.8699 1.0148 -1.2396 REMARK 3 T TENSOR REMARK 3 T11: 0.0637 T22: 0.0538 REMARK 3 T33: 0.0612 T12: -0.0232 REMARK 3 T13: -0.0107 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.0480 L22: 0.3650 REMARK 3 L33: 1.0776 L12: -0.5872 REMARK 3 L13: 0.1248 L23: -0.2461 REMARK 3 S TENSOR REMARK 3 S11: 0.0571 S12: -0.0090 S13: -0.0155 REMARK 3 S21: -0.0463 S22: 0.0128 S23: 0.0266 REMARK 3 S31: -0.0063 S32: 0.0496 S33: -0.0699 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 79 A 83 REMARK 3 RESIDUE RANGE : A 166 A 170 REMARK 3 RESIDUE RANGE : A 252 A 256 REMARK 3 RESIDUE RANGE : A 301 A 303 REMARK 3 ORIGIN FOR THE GROUP (A): 15.9090 -7.8916 11.5815 REMARK 3 T TENSOR REMARK 3 T11: 0.0599 T22: 0.0803 REMARK 3 T33: 0.1151 T12: -0.0104 REMARK 3 T13: -0.0040 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.7400 L22: 0.7367 REMARK 3 L33: 0.0885 L12: -0.7382 REMARK 3 L13: -0.2557 L23: 0.2552 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: -0.0162 S13: 0.0174 REMARK 3 S21: 0.0000 S22: 0.0172 S23: -0.0177 REMARK 3 S31: -0.0017 S32: 0.0064 S33: -0.0115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LQS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200001217. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979736 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23026 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 43.730 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.58800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4P3X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, AMMONIUM SULFATE, REMARK 280 OXALOACETATE, DHAP, NACL, ANAEROBIC, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.37000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 HIS A -5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 99 76.12 -119.41 REMARK 500 PHE A 99 69.47 -118.60 REMARK 500 ASP A 135 58.95 -92.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 81 SG REMARK 620 2 SF4 A 301 S1 113.8 REMARK 620 3 SF4 A 301 S2 103.6 107.3 REMARK 620 4 SF4 A 301 S3 121.6 105.1 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 168 SG REMARK 620 2 SF4 A 301 S2 107.3 REMARK 620 3 SF4 A 301 S3 118.3 106.5 REMARK 620 4 SF4 A 301 S4 110.6 107.0 106.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 254 SG REMARK 620 2 SF4 A 301 S1 114.2 REMARK 620 3 SF4 A 301 S3 116.3 105.1 REMARK 620 4 SF4 A 301 S4 110.3 104.4 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 301 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 NTM A 302 N1 REMARK 620 2 SF4 A 301 S1 151.9 REMARK 620 3 SF4 A 301 S2 94.5 101.6 REMARK 620 4 SF4 A 301 S4 99.0 99.9 102.1 REMARK 620 5 NTM A 302 O1 73.0 79.2 117.8 139.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NTM A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P3X RELATED DB: PDB REMARK 900 STRUCTURE OF THE FE4S4 QUINOLINATE SYNTHASE NADA FROM THERMOTOGA REMARK 900 MARITIMA DBREF 5LQS A 1 298 UNP Q9X1X7 NADA_THEMA 1 298 SEQADV 5LQS MET A -6 UNP Q9X1X7 INITIATING METHIONINE SEQADV 5LQS HIS A -5 UNP Q9X1X7 EXPRESSION TAG SEQADV 5LQS HIS A -4 UNP Q9X1X7 EXPRESSION TAG SEQADV 5LQS HIS A -3 UNP Q9X1X7 EXPRESSION TAG SEQADV 5LQS HIS A -2 UNP Q9X1X7 EXPRESSION TAG SEQADV 5LQS HIS A -1 UNP Q9X1X7 EXPRESSION TAG SEQADV 5LQS HIS A 0 UNP Q9X1X7 EXPRESSION TAG SEQADV 5LQS PHE A 21 UNP Q9X1X7 TYR 21 ENGINEERED MUTATION SEQADV 5LQS ARG A 219 UNP Q9X1X7 LYS 219 ENGINEERED MUTATION SEQRES 1 A 305 MET HIS HIS HIS HIS HIS HIS MET VAL ASP GLU ILE LEU SEQRES 2 A 305 LYS LEU LYS LYS GLU LYS GLY TYR ILE ILE LEU ALA HIS SEQRES 3 A 305 ASN PHE GLN ILE PRO GLU LEU GLN ASP ILE ALA ASP PHE SEQRES 4 A 305 VAL GLY ASP SER LEU GLN LEU ALA ARG LYS ALA MET GLU SEQRES 5 A 305 LEU SER GLU LYS LYS ILE LEU PHE LEU GLY VAL ASP PHE SEQRES 6 A 305 MET ALA GLU LEU VAL LYS ILE LEU ASN PRO ASP LYS LYS SEQRES 7 A 305 VAL ILE VAL PRO ASP ARG SER ALA THR CYS PRO MET ALA SEQRES 8 A 305 ASN ARG LEU THR PRO GLU ILE ILE ARG GLU TYR ARG GLU SEQRES 9 A 305 LYS PHE PRO ASP ALA PRO VAL VAL LEU TYR VAL ASN SER SEQRES 10 A 305 THR SER GLU CYS LYS THR LEU ALA ASP VAL ILE CYS THR SEQRES 11 A 305 SER ALA ASN ALA VAL GLU VAL VAL LYS LYS LEU ASP SER SEQRES 12 A 305 SER VAL VAL ILE PHE GLY PRO ASP ARG ASN LEU GLY GLU SEQRES 13 A 305 TYR VAL ALA GLU LYS THR GLY LYS LYS VAL ILE THR ILE SEQRES 14 A 305 PRO GLU ASN GLY HIS CYS PRO VAL HIS GLN PHE ASN ALA SEQRES 15 A 305 GLU SER ILE ASP ALA VAL ARG LYS LYS TYR PRO ASP ALA SEQRES 16 A 305 LYS VAL ILE VAL HIS PRO GLU CYS PRO LYS PRO VAL ARG SEQRES 17 A 305 ASP LYS ALA ASP TYR VAL GLY SER THR GLY GLN MET GLU SEQRES 18 A 305 LYS ILE PRO GLU ARG ASP PRO SER ARG ILE PHE VAL ILE SEQRES 19 A 305 GLY THR GLU ILE GLY MET ILE HIS LYS LEU LYS LYS LYS SEQRES 20 A 305 PHE PRO ASP ARG GLU PHE VAL PRO LEU GLU MET ALA VAL SEQRES 21 A 305 CYS VAL ASN MET LYS LYS ASN THR LEU GLU ASN THR LEU SEQRES 22 A 305 HIS ALA LEU GLN THR GLU SER PHE GLU VAL ILE LEU PRO SEQRES 23 A 305 LYS GLU VAL ILE GLU LYS ALA LYS LYS PRO ILE LEU ARG SEQRES 24 A 305 MET PHE GLU LEU MET GLY HET SF4 A 301 8 HET NTM A 302 12 HET CL A 303 1 HET CL A 304 1 HETNAM SF4 IRON/SULFUR CLUSTER HETNAM NTM QUINOLINIC ACID HETNAM CL CHLORIDE ION FORMUL 2 SF4 FE4 S4 FORMUL 3 NTM C7 H5 N O4 FORMUL 4 CL 2(CL 1-) FORMUL 6 HOH *285(H2 O) HELIX 1 AA1 HIS A -2 LYS A 12 1 15 HELIX 2 AA2 ILE A 23 ASP A 28 1 6 HELIX 3 AA3 ASP A 35 GLU A 45 1 11 HELIX 4 AA4 VAL A 56 ASN A 67 1 12 HELIX 5 AA5 MET A 83 LEU A 87 5 5 HELIX 6 AA6 THR A 88 PHE A 99 1 12 HELIX 7 AA7 THR A 111 LEU A 117 1 7 HELIX 8 AA8 ASN A 126 LEU A 134 1 9 HELIX 9 AA9 ASP A 144 GLY A 156 1 13 HELIX 10 AB1 CYS A 168 GLN A 172 5 5 HELIX 11 AB2 ALA A 175 TYR A 185 1 11 HELIX 12 AB3 PRO A 197 ALA A 204 1 8 HELIX 13 AB4 SER A 209 GLU A 214 1 6 HELIX 14 AB5 LYS A 215 ASP A 220 1 6 HELIX 15 AB6 ILE A 231 PHE A 241 1 11 HELIX 16 AB7 ASN A 256 ASN A 260 5 5 HELIX 17 AB8 THR A 261 GLU A 272 1 12 HELIX 18 AB9 PRO A 279 LEU A 296 1 18 SHEET 1 AA1 4 PHE A 32 GLY A 34 0 SHEET 2 AA1 4 TYR A 14 HIS A 19 1 N ALA A 18 O PHE A 32 SHEET 3 AA1 4 LYS A 50 LEU A 54 1 O LEU A 54 N LEU A 17 SHEET 4 AA1 4 LYS A 71 ILE A 73 1 O ILE A 73 N PHE A 53 SHEET 1 AA2 4 VAL A 120 CYS A 122 0 SHEET 2 AA2 4 VAL A 104 TYR A 107 1 N LEU A 106 O VAL A 120 SHEET 3 AA2 4 VAL A 138 GLY A 142 1 O ILE A 140 N VAL A 105 SHEET 4 AA2 4 LYS A 158 THR A 161 1 O ILE A 160 N VAL A 139 SHEET 1 AA3 4 TYR A 206 VAL A 207 0 SHEET 2 AA3 4 LYS A 189 VAL A 192 1 N VAL A 192 O TYR A 206 SHEET 3 AA3 4 ILE A 224 GLY A 228 1 O GLY A 228 N ILE A 191 SHEET 4 AA3 4 GLU A 245 PRO A 248 1 O VAL A 247 N PHE A 225 LINK SG CYS A 81 FE4 SF4 A 301 1555 1555 2.29 LINK SG CYS A 168 FE1 SF4 A 301 1555 1555 2.30 LINK SG CYS A 254 FE2 SF4 A 301 1555 1555 2.33 LINK FE3 SF4 A 301 N1 ANTM A 302 1555 1555 2.00 LINK FE3 SF4 A 301 O1 ANTM A 302 1555 1555 2.12 CISPEP 1 GLY A 142 PRO A 143 0 6.31 CISPEP 2 ILE A 162 PRO A 163 0 -6.86 CISPEP 3 SER A 273 PHE A 274 0 6.39 SITE 1 AC1 7 CYS A 81 MET A 83 ASN A 109 CYS A 168 SITE 2 AC1 7 GLU A 195 CYS A 254 NTM A 302 SITE 1 AC2 16 HIS A 19 PHE A 21 SER A 36 MET A 59 SITE 2 AC2 16 TYR A 107 ASN A 109 HIS A 171 HIS A 193 SITE 3 AC2 16 GLU A 195 MET A 257 SF4 A 301 CL A 303 SITE 4 AC2 16 HOH A 403 HOH A 416 HOH A 442 HOH A 595 SITE 1 AC3 7 SER A 124 HIS A 193 SER A 209 THR A 210 SITE 2 AC3 7 NTM A 302 HOH A 442 HOH A 612 SITE 1 AC4 1 ARG A 41 CRYST1 52.060 48.740 60.250 90.00 103.67 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019209 0.000000 0.004672 0.00000 SCALE2 0.000000 0.020517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017081 0.00000