data_5LQT # _entry.id 5LQT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.312 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5LQT WWPDB D_1200001219 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5LQT _pdbx_database_status.recvd_initial_deposition_date 2016-08-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Huang, L.' 1 'Lilley, D.M.J.' 2 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'EMBO Rep.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1469-3178 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 18 _citation.language ? _citation.page_first 1631 _citation.page_last 1645 _citation.title 'Control of box C/D snoRNP assembly by N(6)-methylation of adenine.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.15252/embr.201743967 _citation.pdbx_database_id_PubMed 28623187 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, L.' 1 ? primary 'Ashraf, S.' 2 ? primary 'Wang, J.' 3 ? primary 'Lilley, D.M.' 4 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5LQT _cell.details ? _cell.formula_units_Z ? _cell.length_a 34.340 _cell.length_a_esd ? _cell.length_b 34.340 _cell.length_b_esd ? _cell.length_c 103.170 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LQT _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;RNA (5'-R(*GP*(CBV)P*CP*GP*GP*(6MZ)P*CP*GP*GP*C)-3') ; 3323.927 2 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 5 water nat water 18.015 52 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'G(CBV)CGG(6MZ)CGGC' _entity_poly.pdbx_seq_one_letter_code_can GCCGGACGGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 CBV n 1 3 C n 1 4 G n 1 5 G n 1 6 6MZ n 1 7 C n 1 8 G n 1 9 G n 1 10 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5LQT _struct_ref.pdbx_db_accession 5LQT _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5LQT A 1 ? 10 ? 5LQT 1 ? 10 ? 1 10 2 1 5LQT B 1 ? 10 ? 5LQT 1 ? 10 ? 1 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6MZ 'RNA linking' n "N6-METHYLADENOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O7 P' 361.248 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CBV 'RNA linking' n ;5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) ; ? 'C9 H13 Br N3 O8 P' 402.093 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LQT _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.23 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;0.02 M Calcium Chloride dihydrate, 0.1 M Sodium Acetate trihydrate pH 4.6, 30% v/v 2-Methyl-2,4-pentanediol ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-06-25 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9193 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9193 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5LQT _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 33.35 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10522 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 1.3 _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 11.9 _reflns.pdbx_Rmerge_I_obs 0.056 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 21.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.00 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.53 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.2 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100.0 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.08 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 12.4 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.50 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5LQT _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.500 _refine.ls_d_res_low 32.583 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10520 _refine.ls_number_reflns_R_free 944 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.57 _refine.ls_percent_reflns_R_free 5.02 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2205 _refine.ls_R_factor_R_free 0.2273 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2199 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 28.76 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.20 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 436 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 52 _refine_hist.number_atoms_total 491 _refine_hist.d_res_high 1.500 _refine_hist.d_res_low 32.583 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.023 ? 490 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 4.259 ? 769 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 10.429 ? 196 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.062 ? 94 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 ? 20 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.5002 1.5793 . . 158 2549 100.00 . . . 0.3472 . 0.3250 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5793 1.6782 . . 121 2528 99.00 . . . 0.3143 . 0.2765 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6782 1.8078 . . 120 2597 100.00 . . . 0.2452 . 0.2467 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8078 1.9897 . . 131 2538 100.00 . . . 0.3248 . 0.2668 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9897 2.2775 . . 137 2562 100.00 . . . 0.2839 . 0.2533 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2775 2.8692 . . 124 2583 100.00 . . . 0.3094 . 0.2521 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8692 32.5902 . . 153 2501 99.00 . . . 0.1783 . 0.1851 . . . . . . . . . . # _struct.entry_id 5LQT _struct.title 'RNA duplex has central consecutive GA pairs flanked by G-C basepairs' _struct.pdbx_descriptor ;RNA (5'-R(*GP*(CBV)P*CP*GP*GP*(6MZ)P*CP*GP*GP*C)-3') ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LQT _struct_keywords.text 'N6-methyladenine, RNA folding, Watson-Crick basepairs, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A G 1 "O3'" ? ? ? 1_555 A CBV 2 P ? ? A G 1 A CBV 2 1_555 ? ? ? ? ? ? ? 1.613 ? metalc1 metalc ? ? A G 1 "O3'" ? ? ? 1_555 C CA . CA ? ? A G 1 A CA 101 1_555 ? ? ? ? ? ? ? 3.036 ? metalc2 metalc ? ? A CBV 2 O1P ? ? ? 1_555 C CA . CA ? ? A CBV 2 A CA 101 1_555 ? ? ? ? ? ? ? 3.131 ? covale2 covale one ? A CBV 2 "O3'" ? ? ? 1_555 A C 3 P ? ? A CBV 2 A C 3 1_555 ? ? ? ? ? ? ? 1.598 ? metalc3 metalc ? ? A CBV 2 O2 ? ? ? 1_555 D NA . NA ? ? A CBV 2 A NA 102 1_555 ? ? ? ? ? ? ? 2.555 ? covale3 covale both ? A G 5 "O3'" ? ? ? 1_555 A 6MZ 6 P ? ? A G 5 A 6MZ 6 1_555 ? ? ? ? ? ? ? 1.658 ? covale4 covale both ? A 6MZ 6 "O3'" ? ? ? 1_555 A C 7 P ? ? A 6MZ 6 A C 7 1_555 ? ? ? ? ? ? ? 1.585 ? covale5 covale both ? B G 1 "O3'" ? ? ? 1_555 B CBV 2 P ? ? B G 1 B CBV 2 1_555 ? ? ? ? ? ? ? 1.616 ? covale6 covale one ? B CBV 2 "O3'" ? ? ? 1_555 B C 3 P ? ? B CBV 2 B C 3 1_555 ? ? ? ? ? ? ? 1.599 ? covale7 covale both ? B G 5 "O3'" ? ? ? 1_555 B 6MZ 6 P ? ? B G 5 B 6MZ 6 1_555 ? ? ? ? ? ? ? 1.670 ? covale8 covale both ? B 6MZ 6 "O3'" ? ? ? 1_555 B C 7 P ? ? B 6MZ 6 B C 7 1_555 ? ? ? ? ? ? ? 1.573 ? metalc4 metalc ? ? B C 10 "O3'" ? ? ? 1_555 F MG . MG ? ? B C 10 B MG 101 1_555 ? ? ? ? ? ? ? 2.383 ? metalc5 metalc ? ? B C 10 "O2'" ? ? ? 1_555 F MG . MG ? ? B C 10 B MG 101 1_555 ? ? ? ? ? ? ? 2.589 ? metalc6 metalc ? ? D NA . NA ? ? ? 1_555 G HOH . O ? ? A NA 102 A HOH 228 1_555 ? ? ? ? ? ? ? 3.020 ? metalc7 metalc ? ? D NA . NA ? ? ? 1_555 H HOH . O ? ? A NA 102 B HOH 207 1_555 ? ? ? ? ? ? ? 2.954 ? metalc8 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 223 1_555 ? ? ? ? ? ? ? 2.180 ? metalc9 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 205 1_555 ? ? ? ? ? ? ? 2.182 ? metalc10 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 229 1_555 ? ? ? ? ? ? ? 2.182 ? metalc11 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 230 1_555 ? ? ? ? ? ? ? 2.183 ? metalc12 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 231 1_555 ? ? ? ? ? ? ? 2.177 ? metalc13 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? A MG 103 A HOH 211 1_555 ? ? ? ? ? ? ? 2.186 ? metalc14 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 213 1_555 ? ? ? ? ? ? ? 2.379 ? metalc15 metalc ? ? A C 3 "O3'" ? ? ? 1_555 D NA . NA ? ? A C 3 A NA 102 7_645 ? ? ? ? ? ? ? 2.794 ? metalc16 metalc ? ? A G 4 OP1 ? ? ? 1_555 D NA . NA ? ? A G 4 A NA 102 7_645 ? ? ? ? ? ? ? 3.197 ? metalc17 metalc ? ? A G 5 OP1 ? ? ? 1_555 F MG . MG ? ? A G 5 B MG 101 7_645 ? ? ? ? ? ? ? 2.299 ? metalc18 metalc ? ? F MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 101 A HOH 208 7_645 ? ? ? ? ? ? ? 2.574 ? metalc19 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? B MG 101 B HOH 214 4_555 ? ? ? ? ? ? ? 2.315 ? metalc20 metalc ? ? F MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 101 A HOH 224 7_645 ? ? ? ? ? ? ? 2.245 ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 10 N3 ? ? A G 1 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 10 O2 ? ? A G 1 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 10 N4 ? ? A G 1 B C 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A CBV 2 N3 ? ? ? 1_555 B G 9 N1 ? ? A CBV 2 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A CBV 2 N4 ? ? ? 1_555 B G 9 O6 ? ? A CBV 2 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A CBV 2 O2 ? ? ? 1_555 B G 9 N2 ? ? A CBV 2 B G 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 3 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 3 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 3 B G 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 4 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 4 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 4 B C 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A G 5 N1 ? ? ? 1_555 B 6MZ 6 N1 ? ? A G 5 B 6MZ 6 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 B 6MZ 6 N6 ? ? A G 5 B 6MZ 6 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog15 hydrog ? ? A 6MZ 6 N1 ? ? ? 1_555 B G 5 N1 ? ? A 6MZ 6 B G 5 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog16 hydrog ? ? A 6MZ 6 N6 ? ? ? 1_555 B G 5 O6 ? ? A 6MZ 6 B G 5 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog17 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 4 N1 ? ? A C 7 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 4 O6 ? ? A C 7 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 4 N2 ? ? A C 7 B G 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 B C 3 N3 ? ? A G 8 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A G 8 N2 ? ? ? 1_555 B C 3 O2 ? ? A G 8 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 B C 3 N4 ? ? A G 8 B C 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A G 9 N1 ? ? ? 1_555 B CBV 2 N3 ? ? A G 9 B CBV 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A G 9 N2 ? ? ? 1_555 B CBV 2 O2 ? ? A G 9 B CBV 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A G 9 O6 ? ? ? 1_555 B CBV 2 N4 ? ? A G 9 B CBV 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A C 10 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 10 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A C 10 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 10 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A C 10 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 10 B G 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 101 ? 3 'binding site for residue CA A 101' AC2 Software A NA 102 ? 5 'binding site for residue NA A 102' AC3 Software A MG 103 ? 6 'binding site for residue MG A 103' AC4 Software B MG 101 ? 6 'binding site for residue MG B 101' AC5 Software B G 1 ? 11 'binding site for Di-nucleotide G B 1 and CBV B 2' AC6 Software B CBV 2 ? 10 'binding site for Di-nucleotide CBV B 2 and C B 3' AC7 Software B G 5 ? 7 'binding site for Di-nucleotide G B 5 and 6MZ B 6' AC8 Software B 6MZ 6 ? 9 'binding site for Di-nucleotide 6MZ B 6 and C B 7' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 G A 1 ? G A 1 . ? 1_555 ? 2 AC1 3 CBV A 2 ? CBV A 2 . ? 1_555 ? 3 AC1 3 C B 7 ? C B 7 . ? 7_655 ? 4 AC2 5 CBV A 2 ? CBV A 2 . ? 1_555 ? 5 AC2 5 C A 3 ? C A 3 . ? 7_645 ? 6 AC2 5 G A 4 ? G A 4 . ? 7_645 ? 7 AC2 5 HOH G . ? HOH A 228 . ? 1_555 ? 8 AC2 5 HOH H . ? HOH B 207 . ? 1_555 ? 9 AC3 6 HOH G . ? HOH A 205 . ? 1_555 ? 10 AC3 6 HOH G . ? HOH A 211 . ? 1_555 ? 11 AC3 6 HOH G . ? HOH A 223 . ? 1_555 ? 12 AC3 6 HOH G . ? HOH A 229 . ? 1_555 ? 13 AC3 6 HOH G . ? HOH A 230 . ? 1_555 ? 14 AC3 6 HOH G . ? HOH A 231 . ? 1_555 ? 15 AC4 6 G A 5 ? G A 5 . ? 7_645 ? 16 AC4 6 HOH G . ? HOH A 208 . ? 7_645 ? 17 AC4 6 HOH G . ? HOH A 224 . ? 7_645 ? 18 AC4 6 C B 10 ? C B 10 . ? 1_555 ? 19 AC4 6 HOH H . ? HOH B 213 . ? 1_555 ? 20 AC4 6 HOH H . ? HOH B 214 . ? 4_555 ? 21 AC5 11 G A 1 ? G A 1 . ? 3_544 ? 22 AC5 11 G A 9 ? G A 9 . ? 1_555 ? 23 AC5 11 C A 10 ? C A 10 . ? 1_555 ? 24 AC5 11 HOH G . ? HOH A 214 . ? 1_555 ? 25 AC5 11 C B 3 ? C B 3 . ? 1_555 ? 26 AC5 11 C B 10 ? C B 10 . ? 3_544 ? 27 AC5 11 HOH H . ? HOH B 202 . ? 1_555 ? 28 AC5 11 HOH H . ? HOH B 204 . ? 1_555 ? 29 AC5 11 HOH H . ? HOH B 206 . ? 1_555 ? 30 AC5 11 HOH H . ? HOH B 212 . ? 1_555 ? 31 AC5 11 HOH H . ? HOH B 214 . ? 1_555 ? 32 AC6 10 G A 8 ? G A 8 . ? 1_555 ? 33 AC6 10 G A 9 ? G A 9 . ? 1_555 ? 34 AC6 10 C A 10 ? C A 10 . ? 1_555 ? 35 AC6 10 HOH G . ? HOH A 214 . ? 1_555 ? 36 AC6 10 G B 1 ? G B 1 . ? 1_555 ? 37 AC6 10 G B 4 ? G B 4 . ? 1_555 ? 38 AC6 10 HOH H . ? HOH B 202 . ? 1_555 ? 39 AC6 10 HOH H . ? HOH B 206 . ? 1_555 ? 40 AC6 10 HOH H . ? HOH B 212 . ? 1_555 ? 41 AC6 10 HOH H . ? HOH B 217 . ? 1_555 ? 42 AC7 7 G A 5 ? G A 5 . ? 1_555 ? 43 AC7 7 6MZ A 6 ? 6MZ A 6 . ? 1_555 ? 44 AC7 7 C A 7 ? C A 7 . ? 1_555 ? 45 AC7 7 G B 4 ? G B 4 . ? 1_555 ? 46 AC7 7 C B 7 ? C B 7 . ? 1_555 ? 47 AC7 7 HOH H . ? HOH B 210 . ? 1_555 ? 48 AC7 7 HOH H . ? HOH B 216 . ? 1_555 ? 49 AC8 9 G A 4 ? G A 4 . ? 1_555 ? 50 AC8 9 G A 5 ? G A 5 . ? 1_555 ? 51 AC8 9 6MZ A 6 ? 6MZ A 6 . ? 1_555 ? 52 AC8 9 C A 10 ? C A 10 . ? 5_544 ? 53 AC8 9 CA C . ? CA A 101 . ? 7_545 ? 54 AC8 9 G B 5 ? G B 5 . ? 1_555 ? 55 AC8 9 G B 8 ? G B 8 . ? 1_555 ? 56 AC8 9 HOH H . ? HOH B 210 . ? 1_555 ? 57 AC8 9 HOH H . ? HOH B 211 . ? 1_555 ? # _atom_sites.entry_id 5LQT _atom_sites.fract_transf_matrix[1][1] 0.029121 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.029121 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009693 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C CA MG N NA O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 CBV 2 2 2 CBV CBV A . n A 1 3 C 3 3 3 C C A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 6MZ 6 6 6 6MZ 6MZ A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 8 8 G G A . n A 1 9 G 9 9 9 G G A . n A 1 10 C 10 10 10 C C A . n B 1 1 G 1 1 1 G G B . n B 1 2 CBV 2 2 2 CBV CBV B . n B 1 3 C 3 3 3 C C B . n B 1 4 G 4 4 4 G G B . n B 1 5 G 5 5 5 G G B . n B 1 6 6MZ 6 6 6 6MZ 6MZ B . n B 1 7 C 7 7 7 C C B . n B 1 8 G 8 8 8 G G B . n B 1 9 G 9 9 9 G G B . n B 1 10 C 10 10 10 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA 1 101 1 CA CA A . D 3 NA 1 102 1 NA NA A . E 4 MG 1 103 1 MG MO6 A . F 4 MG 1 101 1 MG MG B . G 5 HOH 1 201 3 HOH HOH A . G 5 HOH 2 202 20 HOH HOH A . G 5 HOH 3 203 29 HOH HOH A . G 5 HOH 4 204 32 HOH HOH A . G 5 HOH 5 205 1 HOH MO6 A . G 5 HOH 6 206 4 HOH HOH A . G 5 HOH 7 207 35 HOH HOH A . G 5 HOH 8 208 12 HOH HOH A . G 5 HOH 9 209 38 HOH HOH A . G 5 HOH 10 210 8 HOH HOH A . G 5 HOH 11 211 1 HOH MO6 A . G 5 HOH 12 212 22 HOH HOH A . G 5 HOH 13 213 30 HOH HOH A . G 5 HOH 14 214 42 HOH HOH A . G 5 HOH 15 215 17 HOH HOH A . G 5 HOH 16 216 43 HOH HOH A . G 5 HOH 17 217 46 HOH HOH A . G 5 HOH 18 218 2 HOH HOH A . G 5 HOH 19 219 7 HOH HOH A . G 5 HOH 20 220 25 HOH HOH A . G 5 HOH 21 221 13 HOH HOH A . G 5 HOH 22 222 27 HOH HOH A . G 5 HOH 23 223 1 HOH MO6 A . G 5 HOH 24 224 10 HOH HOH A . G 5 HOH 25 225 15 HOH HOH A . G 5 HOH 26 226 36 HOH HOH A . G 5 HOH 27 227 37 HOH HOH A . G 5 HOH 28 228 26 HOH HOH A . G 5 HOH 29 229 1 HOH MO6 A . G 5 HOH 30 230 1 HOH MO6 A . G 5 HOH 31 231 1 HOH MO6 A . H 5 HOH 1 201 39 HOH HOH B . H 5 HOH 2 202 19 HOH HOH B . H 5 HOH 3 203 44 HOH HOH B . H 5 HOH 4 204 6 HOH HOH B . H 5 HOH 5 205 18 HOH HOH B . H 5 HOH 6 206 21 HOH HOH B . H 5 HOH 7 207 1 HOH HOH B . H 5 HOH 8 208 16 HOH HOH B . H 5 HOH 9 209 33 HOH HOH B . H 5 HOH 10 210 5 HOH HOH B . H 5 HOH 11 211 14 HOH HOH B . H 5 HOH 12 212 45 HOH HOH B . H 5 HOH 13 213 11 HOH HOH B . H 5 HOH 14 214 9 HOH HOH B . H 5 HOH 15 215 24 HOH HOH B . H 5 HOH 16 216 28 HOH HOH B . H 5 HOH 17 217 40 HOH HOH B . H 5 HOH 18 218 31 HOH HOH B . H 5 HOH 19 219 23 HOH HOH B . H 5 HOH 20 220 41 HOH HOH B . H 5 HOH 21 221 34 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4020 ? 1 MORE -15 ? 1 'SSA (A^2)' 3200 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 "O3'" ? A G 1 ? A G 1 ? 1_555 CA ? C CA . ? A CA 101 ? 1_555 O1P ? A CBV 2 ? A CBV 2 ? 1_555 43.0 ? 2 O2 ? A CBV 2 ? A CBV 2 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O ? G HOH . ? A HOH 228 ? 1_555 128.7 ? 3 O2 ? A CBV 2 ? A CBV 2 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O ? H HOH . ? B HOH 207 ? 1_555 103.4 ? 4 O ? G HOH . ? A HOH 228 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 O ? H HOH . ? B HOH 207 ? 1_555 85.7 ? 5 O2 ? A CBV 2 ? A CBV 2 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 "O3'" ? A C 3 ? A C 3 ? 1_555 64.1 ? 6 O ? G HOH . ? A HOH 228 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 "O3'" ? A C 3 ? A C 3 ? 1_555 120.3 ? 7 O ? H HOH . ? B HOH 207 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 "O3'" ? A C 3 ? A C 3 ? 1_555 153.8 ? 8 O2 ? A CBV 2 ? A CBV 2 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 OP1 ? A G 4 ? A G 4 ? 1_555 64.4 ? 9 O ? G HOH . ? A HOH 228 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 OP1 ? A G 4 ? A G 4 ? 1_555 119.4 ? 10 O ? H HOH . ? B HOH 207 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 OP1 ? A G 4 ? A G 4 ? 1_555 154.7 ? 11 "O3'" ? A C 3 ? A C 3 ? 1_555 NA ? D NA . ? A NA 102 ? 1_555 OP1 ? A G 4 ? A G 4 ? 1_555 0.9 ? 12 "O3'" ? B C 10 ? B C 10 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 "O2'" ? B C 10 ? B C 10 ? 1_555 67.4 ? 13 "O3'" ? B C 10 ? B C 10 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 213 ? 1_555 74.1 ? 14 "O2'" ? B C 10 ? B C 10 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 213 ? 1_555 139.6 ? 15 "O3'" ? B C 10 ? B C 10 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 OP1 ? A G 5 ? A G 5 ? 1_555 78.0 ? 16 "O2'" ? B C 10 ? B C 10 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 OP1 ? A G 5 ? A G 5 ? 1_555 28.3 ? 17 O ? H HOH . ? B HOH 213 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 OP1 ? A G 5 ? A G 5 ? 1_555 148.3 ? 18 "O3'" ? B C 10 ? B C 10 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? G HOH . ? A HOH 208 ? 7_645 134.8 ? 19 "O2'" ? B C 10 ? B C 10 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? G HOH . ? A HOH 208 ? 7_645 68.5 ? 20 O ? H HOH . ? B HOH 213 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? G HOH . ? A HOH 208 ? 7_645 151.1 ? 21 OP1 ? A G 5 ? A G 5 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? G HOH . ? A HOH 208 ? 7_645 58.2 ? 22 "O3'" ? B C 10 ? B C 10 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 214 ? 4_555 90.9 ? 23 "O2'" ? B C 10 ? B C 10 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 214 ? 4_555 90.1 ? 24 O ? H HOH . ? B HOH 213 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 214 ? 4_555 78.5 ? 25 OP1 ? A G 5 ? A G 5 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 214 ? 4_555 116.9 ? 26 O ? G HOH . ? A HOH 208 ? 7_645 MG ? F MG . ? B MG 101 ? 1_555 O ? H HOH . ? B HOH 214 ? 4_555 98.9 ? 27 "O3'" ? B C 10 ? B C 10 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? G HOH . ? A HOH 224 ? 7_645 151.8 ? 28 "O2'" ? B C 10 ? B C 10 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? G HOH . ? A HOH 224 ? 7_645 140.3 ? 29 O ? H HOH . ? B HOH 213 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? G HOH . ? A HOH 224 ? 7_645 77.7 ? 30 OP1 ? A G 5 ? A G 5 ? 1_555 MG ? F MG . ? B MG 101 ? 1_555 O ? G HOH . ? A HOH 224 ? 7_645 128.6 ? 31 O ? G HOH . ? A HOH 208 ? 7_645 MG ? F MG . ? B MG 101 ? 1_555 O ? G HOH . ? A HOH 224 ? 7_645 73.4 ? 32 O ? H HOH . ? B HOH 214 ? 4_555 MG ? F MG . ? B MG 101 ? 1_555 O ? G HOH . ? A HOH 224 ? 7_645 84.8 ? 33 O ? G HOH . ? A HOH 223 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 205 ? 1_555 90.0 ? 34 O ? G HOH . ? A HOH 223 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 229 ? 1_555 90.5 ? 35 O ? G HOH . ? A HOH 205 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 229 ? 1_555 179.1 ? 36 O ? G HOH . ? A HOH 223 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 230 ? 1_555 90.1 ? 37 O ? G HOH . ? A HOH 205 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 230 ? 1_555 91.0 ? 38 O ? G HOH . ? A HOH 229 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 230 ? 1_555 89.8 ? 39 O ? G HOH . ? A HOH 223 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 231 ? 1_555 179.0 ? 40 O ? G HOH . ? A HOH 205 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 231 ? 1_555 89.4 ? 41 O ? G HOH . ? A HOH 229 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 231 ? 1_555 90.2 ? 42 O ? G HOH . ? A HOH 230 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 231 ? 1_555 89.2 ? 43 O ? G HOH . ? A HOH 223 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 211 ? 1_555 91.0 ? 44 O ? G HOH . ? A HOH 205 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 211 ? 1_555 89.1 ? 45 O ? G HOH . ? A HOH 229 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 211 ? 1_555 90.1 ? 46 O ? G HOH . ? A HOH 230 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 211 ? 1_555 178.9 ? 47 O ? G HOH . ? A HOH 231 ? 1_555 MG ? E MG . ? A MG 103 ? 1_555 O ? G HOH . ? A HOH 211 ? 1_555 89.7 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-06-21 2 'Structure model' 1 1 2017-06-28 3 'Structure model' 1 2 2017-09-13 4 'Structure model' 2 0 2019-02-20 5 'Structure model' 2 1 2019-07-10 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Polymer sequence' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 4 'Structure model' diffrn_source 5 4 'Structure model' entity_poly 6 4 'Structure model' ndb_struct_conf_na 7 4 'Structure model' ndb_struct_na_base_pair 8 4 'Structure model' ndb_struct_na_base_pair_step 9 4 'Structure model' pdbx_seq_map_depositor_info 10 4 'Structure model' struct_conn 11 5 'Structure model' diffrn_source # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.pdbx_database_id_DOI' 4 2 'Structure model' '_citation.pdbx_database_id_PubMed' 5 2 'Structure model' '_citation.title' 6 3 'Structure model' '_citation.journal_volume' 7 3 'Structure model' '_citation.page_first' 8 3 'Structure model' '_citation.page_last' 9 4 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 10 4 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 11 4 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code' 12 5 'Structure model' '_diffrn_source.pdbx_synchrotron_site' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(dev_2481: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? xia2 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O4'" B G 9 ? ? O B HOH 201 ? ? 1.81 2 1 "O5'" B G 9 ? ? O B HOH 201 ? ? 1.81 3 1 "C4'" B G 9 ? ? O B HOH 201 ? ? 1.85 4 1 "C3'" B G 9 ? ? O B HOH 201 ? ? 1.86 5 1 O2P B CBV 2 ? ? O B HOH 202 ? ? 1.97 6 1 C8 B G 9 ? ? O B HOH 201 ? ? 2.12 7 1 OP1 B C 10 ? ? O B HOH 203 ? ? 2.18 8 1 "C5'" B G 9 ? ? O B HOH 201 ? ? 2.19 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5LQT 'double helix' 5LQT 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 10 1_555 -0.343 -0.164 0.093 -0.858 -2.581 -0.522 1 A_G1:C10_B A 1 ? B 10 ? 19 1 1 A CBV 2 1_555 B G 9 1_555 0.186 -0.186 -0.009 12.562 -18.513 0.743 2 A_CBV2:G9_B A 2 ? B 9 ? 19 1 1 A C 3 1_555 B G 8 1_555 0.291 -0.210 -0.053 3.396 -17.470 0.020 3 A_C3:G8_B A 3 ? B 8 ? 19 1 1 A G 4 1_555 B C 7 1_555 -0.175 -0.140 0.039 -9.240 -19.770 -0.070 4 A_G4:C7_B A 4 ? B 7 ? 19 1 1 A G 5 1_555 B 6MZ 6 1_555 -0.085 1.491 -0.252 0.588 -13.902 -14.812 5 A_G5:6MZ6_B A 5 ? B 6 ? 8 1 1 A 6MZ 6 1_555 B G 5 1_555 0.185 1.530 -0.227 -3.289 -11.664 -10.945 6 A_6MZ6:G5_B A 6 ? B 5 ? 8 1 1 A C 7 1_555 B G 4 1_555 0.243 -0.300 0.208 6.571 -17.025 1.597 7 A_C7:G4_B A 7 ? B 4 ? 19 1 1 A G 8 1_555 B C 3 1_555 -0.150 -0.146 0.043 -1.630 -14.996 3.234 8 A_G8:C3_B A 8 ? B 3 ? 19 1 1 A G 9 1_555 B CBV 2 1_555 -0.221 -0.155 -0.010 -5.405 -13.630 -0.965 9 A_G9:CBV2_B A 9 ? B 2 ? 19 1 1 A C 10 1_555 B G 1 1_555 0.279 -0.098 0.219 2.331 -8.331 -0.338 10 A_C10:G1_B A 10 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 10 1_555 A CBV 2 1_555 B G 9 1_555 -1.085 -2.194 2.894 -3.773 3.913 28.705 -5.084 1.445 2.695 7.804 7.526 29.204 1 AA_G1CBV2:G9C10_BB A 1 ? B 10 ? A 2 ? B 9 ? 1 A CBV 2 1_555 B G 9 1_555 A C 3 1_555 B G 8 1_555 -0.161 -1.772 3.356 -0.110 10.751 33.866 -4.398 0.249 2.687 17.905 0.183 35.484 2 AA_CBV2C3:G8G9_BB A 2 ? B 9 ? A 3 ? B 8 ? 1 A C 3 1_555 B G 8 1_555 A G 4 1_555 B C 7 1_555 0.494 -1.792 3.300 2.934 18.531 34.356 -4.671 -0.425 2.129 28.862 -4.569 39.009 3 AA_C3G4:C7G8_BB A 3 ? B 8 ? A 4 ? B 7 ? 1 A G 4 1_555 B C 7 1_555 A G 5 1_555 B 6MZ 6 1_555 -1.272 -1.372 3.024 2.758 0.909 28.322 -2.976 3.155 2.845 1.851 -5.619 28.467 4 AA_G4G5:6MZ6C7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A G 5 1_555 B 6MZ 6 1_555 A 6MZ 6 1_555 B G 5 1_555 0.404 -1.591 3.412 1.315 8.386 28.956 -4.733 -0.515 2.864 16.333 -2.562 30.150 5 AA_G56MZ6:G56MZ6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A 6MZ 6 1_555 B G 5 1_555 A C 7 1_555 B G 4 1_555 0.921 -1.108 3.025 -4.240 2.694 28.729 -2.724 -2.651 2.750 5.377 8.463 29.155 6 AA_6MZ6C7:G4G5_BB A 6 ? B 5 ? A 7 ? B 4 ? 1 A C 7 1_555 B G 4 1_555 A G 8 1_555 B C 3 1_555 -0.278 -1.753 3.190 -1.063 15.990 29.596 -5.261 0.333 2.014 28.797 1.915 33.571 7 AA_C7G8:C3G4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A G 8 1_555 B C 3 1_555 A G 9 1_555 B CBV 2 1_555 -0.587 -1.518 3.308 -0.608 7.725 32.146 -3.925 0.933 2.886 13.703 1.079 33.042 8 AA_G8G9:CBV2C3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 A G 9 1_555 B CBV 2 1_555 A C 10 1_555 B G 1 1_555 0.794 -1.843 3.066 1.617 0.663 32.917 -3.355 -1.141 3.063 1.169 -2.851 32.962 9 AA_G9C10:G1CBV2_BB A 9 ? B 2 ? A 10 ? B 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 'SODIUM ION' NA 4 'MAGNESIUM ION' MG 5 water HOH #