HEADER RNA 18-AUG-16 5LR4 TITLE RNA DUPLEX HAS CENTRAL CONSECUTIVE GA PAIRS FLANKED BY G-U BASEPAIRS TITLE 2 WITH A METHYL GROUP ON THE ADENINE N6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'-R(*GP*(CBV)P*CP*GP*GP*(6MZ)P*UP*GP*GP*C)-3'); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS N6-METHYLADENINE, RNA FOLDING, WATSON-CRICK BASEPAIRS, HOOGSTEEN- KEYWDS 2 SUGAR EDGE A-G BASEPAIR, RNA EXPDTA X-RAY DIFFRACTION AUTHOR L.HUANG,D.M.J.LILLEY REVDAT 6 08-MAY-24 5LR4 1 REMARK REVDAT 5 10-JUL-19 5LR4 1 REMARK REVDAT 4 20-FEB-19 5LR4 1 REMARK SEQRES REVDAT 3 13-SEP-17 5LR4 1 JRNL REVDAT 2 28-JUN-17 5LR4 1 JRNL REVDAT 1 21-JUN-17 5LR4 0 JRNL AUTH L.HUANG,S.ASHRAF,J.WANG,D.M.LILLEY JRNL TITL CONTROL OF BOX C/D SNORNP ASSEMBLY BY N(6)-METHYLATION OF JRNL TITL 2 ADENINE. JRNL REF EMBO REP. V. 18 1631 2017 JRNL REFN ESSN 1469-3178 JRNL PMID 28623187 JRNL DOI 10.15252/EMBR.201743967 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2481: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 14934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.270 REMARK 3 R VALUE (WORKING SET) : 0.269 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.740 REMARK 3 FREE R VALUE TEST SET COUNT : 1268 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.2701 - 3.7436 0.98 2873 142 0.1670 0.1960 REMARK 3 2 3.7436 - 2.9716 0.96 2807 147 0.2362 0.2624 REMARK 3 3 2.9716 - 2.5960 0.96 2811 130 0.3031 0.3204 REMARK 3 4 2.5960 - 2.3586 0.96 2834 113 0.3500 0.3480 REMARK 3 5 2.3586 - 2.1896 0.98 2835 162 0.3682 0.3661 REMARK 3 6 2.1896 - 2.0605 0.98 2854 165 0.3766 0.3552 REMARK 3 7 2.0605 - 1.9573 0.96 2842 127 0.4036 0.3781 REMARK 3 8 1.9573 - 1.8721 0.93 2693 155 0.4684 0.5091 REMARK 3 9 1.8721 - 1.8000 1.00 2949 127 0.5114 0.5255 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 972 REMARK 3 ANGLE : 4.218 1524 REMARK 3 CHIRALITY : 0.060 188 REMARK 3 PLANARITY : 0.009 40 REMARK 3 DIHEDRAL : 20.309 468 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:5) REMARK 3 ORIGIN FOR THE GROUP (A): -4.5595 27.1027 -1.8188 REMARK 3 T TENSOR REMARK 3 T11: 0.4792 T22: 0.3438 REMARK 3 T33: 0.3345 T12: 0.0460 REMARK 3 T13: -0.0329 T23: -0.0490 REMARK 3 L TENSOR REMARK 3 L11: 7.6916 L22: 6.2127 REMARK 3 L33: 3.5589 L12: 3.2877 REMARK 3 L13: -5.1216 L23: -2.1760 REMARK 3 S TENSOR REMARK 3 S11: 0.2361 S12: -0.8306 S13: 0.3165 REMARK 3 S21: 0.6493 S22: 0.1215 S23: -0.1151 REMARK 3 S31: -0.5464 S32: 0.6427 S33: -0.3292 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 6:10) REMARK 3 ORIGIN FOR THE GROUP (A): 2.2278 17.6981 13.6024 REMARK 3 T TENSOR REMARK 3 T11: 0.8878 T22: 0.6981 REMARK 3 T33: 0.5320 T12: 0.1217 REMARK 3 T13: -0.2608 T23: 0.0452 REMARK 3 L TENSOR REMARK 3 L11: 7.0525 L22: 6.4568 REMARK 3 L33: 4.2036 L12: 5.6718 REMARK 3 L13: 4.6444 L23: 5.0237 REMARK 3 S TENSOR REMARK 3 S11: 0.8312 S12: -0.0013 S13: -0.8422 REMARK 3 S21: 0.0855 S22: 0.0082 S23: -0.5863 REMARK 3 S31: 1.0857 S32: 0.0357 S33: -0.6876 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 1:5) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5097 26.2594 11.1502 REMARK 3 T TENSOR REMARK 3 T11: 0.6448 T22: 0.5045 REMARK 3 T33: 0.4017 T12: -0.0131 REMARK 3 T13: -0.1114 T23: -0.0723 REMARK 3 L TENSOR REMARK 3 L11: 6.7259 L22: 3.3216 REMARK 3 L33: 5.3013 L12: 0.1838 REMARK 3 L13: 0.6270 L23: 1.3986 REMARK 3 S TENSOR REMARK 3 S11: 0.6935 S12: 0.6323 S13: -0.6248 REMARK 3 S21: -0.7282 S22: -0.2778 S23: -0.0827 REMARK 3 S31: -0.0723 S32: 0.0525 S33: -0.3858 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 6:10) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8704 18.2876 -3.6959 REMARK 3 T TENSOR REMARK 3 T11: 0.5733 T22: 0.2615 REMARK 3 T33: 0.3402 T12: 0.0566 REMARK 3 T13: -0.0716 T23: -0.0751 REMARK 3 L TENSOR REMARK 3 L11: 6.2088 L22: 8.2511 REMARK 3 L33: 3.6191 L12: -4.9681 REMARK 3 L13: 2.2955 L23: -5.2811 REMARK 3 S TENSOR REMARK 3 S11: -0.2049 S12: -0.3990 S13: -0.1960 REMARK 3 S21: 0.1941 S22: 0.5441 S23: -0.2517 REMARK 3 S31: 0.1690 S32: 0.2112 S33: -0.3374 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN C AND RESID 1:5) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9737 27.8314 -8.9138 REMARK 3 T TENSOR REMARK 3 T11: 0.5461 T22: 0.5524 REMARK 3 T33: 0.3344 T12: 0.0831 REMARK 3 T13: -0.0989 T23: -0.0352 REMARK 3 L TENSOR REMARK 3 L11: 2.9182 L22: 8.5667 REMARK 3 L33: 6.4287 L12: -0.6610 REMARK 3 L13: -2.7771 L23: 4.4099 REMARK 3 S TENSOR REMARK 3 S11: 0.4156 S12: 0.5227 S13: -0.3109 REMARK 3 S21: -0.9472 S22: -0.0465 S23: 0.2534 REMARK 3 S31: -0.2814 S32: -1.4860 S33: -0.3252 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN C AND RESID 6:10) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6328 18.0519 -23.0861 REMARK 3 T TENSOR REMARK 3 T11: 1.1682 T22: 0.6183 REMARK 3 T33: 0.6367 T12: -0.2197 REMARK 3 T13: -0.4147 T23: -0.0301 REMARK 3 L TENSOR REMARK 3 L11: 0.9225 L22: 2.8405 REMARK 3 L33: 0.5558 L12: 1.4088 REMARK 3 L13: -0.6423 L23: -0.6959 REMARK 3 S TENSOR REMARK 3 S11: 0.7742 S12: -0.0792 S13: -1.0497 REMARK 3 S21: 0.6893 S22: 0.3771 S23: -0.1947 REMARK 3 S31: 1.2628 S32: 0.0964 S33: -0.0983 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN D AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6564 27.7818 -23.4264 REMARK 3 T TENSOR REMARK 3 T11: 0.4596 T22: 0.3906 REMARK 3 T33: 0.3915 T12: 0.0052 REMARK 3 T13: -0.1147 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.0023 L22: 8.8021 REMARK 3 L33: 8.6419 L12: -4.6734 REMARK 3 L13: 0.5017 L23: -1.8252 REMARK 3 S TENSOR REMARK 3 S11: 0.9015 S12: -1.4882 S13: -0.4167 REMARK 3 S21: 1.0152 S22: 0.0588 S23: -0.3251 REMARK 3 S31: -0.2217 S32: -0.2646 S33: -0.7433 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN D AND RESID 5:10) REMARK 3 ORIGIN FOR THE GROUP (A): -20.2491 19.8793 -7.7171 REMARK 3 T TENSOR REMARK 3 T11: 0.6561 T22: 0.7347 REMARK 3 T33: 0.3908 T12: -0.2203 REMARK 3 T13: -0.1533 T23: 0.2915 REMARK 3 L TENSOR REMARK 3 L11: 1.4734 L22: 3.8231 REMARK 3 L33: 0.2338 L12: -0.5166 REMARK 3 L13: 0.2752 L23: 0.7252 REMARK 3 S TENSOR REMARK 3 S11: -0.0459 S12: -0.4444 S13: -0.6034 REMARK 3 S21: -0.3855 S22: 0.9227 S23: 0.1987 REMARK 3 S31: 0.7195 S32: -1.8512 S33: -0.4067 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LR4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200001231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9196 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17404 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 46.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.20 REMARK 200 R MERGE FOR SHELL (I) : 2.20000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CHLORIDE, 0.1M BIS-TRIS PH REMARK 280 6.5, 1.5 M AMMONIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.86750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 24.93500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 24.93500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.80125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 24.93500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 24.93500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.93375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 24.93500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 24.93500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 92.80125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 24.93500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 24.93500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 30.93375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.86750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3' G C 5 O3P 6MZ C 6 0.42 REMARK 500 O3' G B 1 O3P CBV B 2 0.46 REMARK 500 HO2' C A 3 HO2' C D 10 1.30 REMARK 500 HO2' C B 10 HO2' C C 3 1.31 REMARK 500 O HOH C 210 O HOH C 212 2.05 REMARK 500 O2' G C 8 O HOH C 201 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 6MZ B 6 O3' - P - O5' ANGL. DEV. = -14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 101 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CBV C 2 O2' REMARK 620 2 HOH C 207 O 100.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide G B 1 and CBV B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide CBV B 2 and C B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide G B 5 and 6MZ B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide G C 1 and CBV C 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide CBV C 2 and C C 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide G C 5 and 6MZ C 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide G D 1 and CBV D 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide CBV D 2 and C D 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide G D 5 and 6MZ D 6 DBREF 5LR4 A 1 10 PDB 5LR4 5LR4 1 10 DBREF 5LR4 B 1 10 PDB 5LR4 5LR4 1 10 DBREF 5LR4 C 1 10 PDB 5LR4 5LR4 1 10 DBREF 5LR4 D 1 10 PDB 5LR4 5LR4 1 10 SEQRES 1 A 10 G CBV C G G 6MZ U G G C SEQRES 1 B 10 G CBV C G G 6MZ U G G C SEQRES 1 C 10 G CBV C G G 6MZ U G G C SEQRES 1 D 10 G CBV C G G 6MZ U G G C HET CBV A 2 32 HET 6MZ A 6 38 HET CBV B 2 32 HET 6MZ B 6 38 HET CBV C 2 32 HET 6MZ C 6 38 HET CBV D 2 32 HET 6MZ D 6 38 HET NA A 101 1 HET NA C 101 1 HET NA C 102 1 HET NA D 101 1 HETNAM CBV 5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM 6MZ N6-METHYLADENOSINE-5'-MONOPHOSPHATE HETNAM NA SODIUM ION FORMUL 1 CBV 4(C9 H13 BR N3 O8 P) FORMUL 1 6MZ 4(C11 H16 N5 O7 P) FORMUL 5 NA 4(NA 1+) FORMUL 9 HOH *56(H2 O) LINK O3' G A 1 P CBV A 2 1555 1555 1.62 LINK O3' CBV A 2 P C A 3 1555 1555 1.61 LINK O3' G A 5 P 6MZ A 6 1555 1555 1.61 LINK O3' 6MZ A 6 P U A 7 1555 1555 1.58 LINK O3' G B 1 P CBV B 2 1555 1555 1.62 LINK O3' CBV B 2 P C B 3 1555 1555 1.60 LINK O3' G B 5 P 6MZ B 6 1555 1555 1.60 LINK O3' 6MZ B 6 P U B 7 1555 1555 1.60 LINK O3' G C 1 P CBV C 2 1555 1555 1.62 LINK O3' CBV C 2 P C C 3 1555 1555 1.61 LINK O3' G C 5 P 6MZ C 6 1555 1555 1.62 LINK O3' 6MZ C 6 P U C 7 1555 1555 1.60 LINK O3' G D 1 P CBV D 2 1555 1555 1.62 LINK O3' CBV D 2 P C D 3 1555 1555 1.60 LINK O3' G D 5 P 6MZ D 6 1555 1555 1.61 LINK O3' 6MZ D 6 P U D 7 1555 1555 1.61 LINK O2' CBV C 2 NA NA C 101 1555 1555 2.99 LINK NA NA C 101 O HOH C 207 1555 1555 2.60 SITE 1 AC1 1 CBV A 2 SITE 1 AC2 3 CBV C 2 C C 3 HOH C 207 SITE 1 AC3 1 CBV C 2 SITE 1 AC4 1 G D 1 SITE 1 AC5 9 G A 1 G A 9 C A 10 HOH A 207 SITE 2 AC5 9 C B 3 C B 10 HOH B 103 HOH B 104 SITE 3 AC5 9 HOH B 109 SITE 1 AC6 9 G A 8 G A 9 C A 10 HOH A 207 SITE 2 AC6 9 G B 1 G B 4 HOH B 109 HOH B 111 SITE 3 AC6 9 HOH B 115 SITE 1 AC7 7 G A 5 6MZ A 6 G B 4 U B 7 SITE 2 AC7 7 HOH B 113 G C 9 C C 10 SITE 1 AC8 8 C C 3 NA C 101 NA C 102 HOH C 206 SITE 2 AC8 8 HOH C 207 HOH C 210 G D 9 C D 10 SITE 1 AC9 12 C B 10 G C 1 G C 4 NA C 101 SITE 2 AC9 12 NA C 102 HOH C 202 HOH C 205 HOH C 207 SITE 3 AC9 12 HOH C 211 G D 8 G D 9 C D 10 SITE 1 AD1 7 G C 4 U C 7 HOH C 208 G D 5 SITE 2 AD1 7 6MZ D 6 HOH D 205 HOH D 208 SITE 1 AD2 7 G C 9 C C 10 HOH C 204 C D 3 SITE 2 AD2 7 NA D 101 HOH D 207 HOH D 214 SITE 1 AD3 8 U A 7 G C 8 G C 9 C C 10 SITE 2 AD3 8 G D 1 G D 4 HOH D 207 HOH D 211 SITE 1 AD4 10 G C 5 6MZ C 6 U C 7 G D 4 SITE 2 AD4 10 U D 7 HOH D 201 HOH D 204 HOH D 205 SITE 3 AD4 10 HOH D 208 HOH D 212 CRYST1 49.870 49.870 123.735 90.00 90.00 90.00 P 43 21 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020052 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020052 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008082 0.00000 CONECT 6 34 CONECT 33 34 CONECT 34 6 33 35 36 CONECT 34 37 CONECT 35 34 CONECT 36 34 CONECT 37 34 38 CONECT 38 37 39 55 56 CONECT 39 38 40 41 57 CONECT 40 39 45 CONECT 41 39 42 43 58 CONECT 42 41 65 CONECT 43 41 44 45 59 CONECT 44 43 60 CONECT 45 40 43 46 61 CONECT 46 45 47 53 CONECT 47 46 48 49 CONECT 48 47 CONECT 49 47 50 CONECT 50 49 51 52 CONECT 51 50 62 63 CONECT 52 50 53 54 CONECT 53 46 52 64 CONECT 54 52 CONECT 55 38 CONECT 56 38 CONECT 57 39 CONECT 58 41 CONECT 59 43 CONECT 60 44 CONECT 61 45 CONECT 62 51 CONECT 63 51 CONECT 64 53 CONECT 65 42 CONECT 138 186 CONECT 164 170 171 188 CONECT 165 166 169 170 CONECT 166 165 172 175 CONECT 167 186 CONECT 168 186 CONECT 169 165 176 181 CONECT 170 164 165 CONECT 171 164 172 CONECT 172 166 171 173 CONECT 173 172 174 200 CONECT 174 173 191 192 201 CONECT 175 166 176 CONECT 176 169 175 189 CONECT 177 178 186 CONECT 178 177 179 193 194 CONECT 179 178 180 184 195 CONECT 180 179 181 CONECT 181 169 180 182 190 CONECT 182 181 183 184 197 CONECT 183 182 198 CONECT 184 179 182 185 196 CONECT 185 184 199 202 CONECT 186 138 167 168 177 CONECT 186 187 CONECT 187 186 CONECT 188 164 CONECT 189 176 CONECT 190 181 CONECT 191 174 CONECT 192 174 CONECT 193 178 CONECT 194 178 CONECT 195 179 CONECT 196 184 CONECT 197 182 CONECT 198 183 CONECT 199 185 CONECT 200 173 CONECT 201 174 CONECT 202 185 CONECT 338 366 CONECT 365 366 CONECT 366 338 365 367 368 CONECT 366 369 CONECT 367 366 CONECT 368 366 CONECT 369 366 370 CONECT 370 369 371 387 388 CONECT 371 370 372 373 389 CONECT 372 371 377 CONECT 373 371 374 375 390 CONECT 374 373 397 CONECT 375 373 376 377 391 CONECT 376 375 392 CONECT 377 372 375 378 393 CONECT 378 377 379 385 CONECT 379 378 380 381 CONECT 380 379 CONECT 381 379 382 CONECT 382 381 383 384 CONECT 383 382 394 395 CONECT 384 382 385 386 CONECT 385 378 384 396 CONECT 386 384 CONECT 387 370 CONECT 388 370 CONECT 389 371 CONECT 390 373 CONECT 391 375 CONECT 392 376 CONECT 393 377 CONECT 394 383 CONECT 395 383 CONECT 396 385 CONECT 397 374 CONECT 470 518 CONECT 496 502 503 520 CONECT 497 498 501 502 CONECT 498 497 504 507 CONECT 499 518 CONECT 500 518 CONECT 501 497 508 513 CONECT 502 496 497 CONECT 503 496 504 CONECT 504 498 503 505 CONECT 505 504 506 532 CONECT 506 505 523 524 533 CONECT 507 498 508 CONECT 508 501 507 521 CONECT 509 510 518 CONECT 510 509 511 525 526 CONECT 511 510 512 516 527 CONECT 512 511 513 CONECT 513 501 512 514 522 CONECT 514 513 515 516 529 CONECT 515 514 530 CONECT 516 511 514 517 528 CONECT 517 516 531 534 CONECT 518 470 499 500 509 CONECT 518 519 CONECT 519 518 CONECT 520 496 CONECT 521 508 CONECT 522 513 CONECT 523 506 CONECT 524 506 CONECT 525 510 CONECT 526 510 CONECT 527 511 CONECT 528 516 CONECT 529 514 CONECT 530 515 CONECT 531 517 CONECT 532 505 CONECT 533 506 CONECT 534 517 CONECT 670 698 CONECT 697 698 CONECT 698 670 697 699 700 CONECT 698 701 CONECT 699 698 CONECT 700 698 CONECT 701 698 702 CONECT 702 701 703 719 720 CONECT 703 702 704 705 721 CONECT 704 703 709 CONECT 705 703 706 707 722 CONECT 706 705 729 CONECT 707 705 708 709 723 CONECT 708 707 724 1330 CONECT 709 704 707 710 725 CONECT 710 709 711 717 CONECT 711 710 712 713 CONECT 712 711 CONECT 713 711 714 CONECT 714 713 715 716 CONECT 715 714 726 727 CONECT 716 714 717 718 CONECT 717 710 716 728 CONECT 718 716 CONECT 719 702 CONECT 720 702 CONECT 721 703 CONECT 722 705 CONECT 723 707 CONECT 724 708 CONECT 725 709 CONECT 726 715 CONECT 727 715 CONECT 728 717 CONECT 729 706 CONECT 802 850 CONECT 828 834 835 852 CONECT 829 830 833 834 CONECT 830 829 836 839 CONECT 831 850 CONECT 832 850 CONECT 833 829 840 845 CONECT 834 828 829 CONECT 835 828 836 CONECT 836 830 835 837 CONECT 837 836 838 864 CONECT 838 837 855 856 865 CONECT 839 830 840 CONECT 840 833 839 853 CONECT 841 842 850 CONECT 842 841 843 857 858 CONECT 843 842 844 848 859 CONECT 844 843 845 CONECT 845 833 844 846 854 CONECT 846 845 847 848 861 CONECT 847 846 862 CONECT 848 843 846 849 860 CONECT 849 848 863 866 CONECT 850 802 831 832 841 CONECT 850 851 CONECT 851 850 CONECT 852 828 CONECT 853 840 CONECT 854 845 CONECT 855 838 CONECT 856 838 CONECT 857 842 CONECT 858 842 CONECT 859 843 CONECT 860 848 CONECT 861 846 CONECT 862 847 CONECT 863 849 CONECT 864 837 CONECT 865 838 CONECT 866 849 CONECT 1002 1030 CONECT 1029 1030 CONECT 1030 1002 1029 1031 1032 CONECT 1030 1033 CONECT 1031 1030 CONECT 1032 1030 CONECT 1033 1030 1034 CONECT 1034 1033 1035 1051 1052 CONECT 1035 1034 1036 1037 1053 CONECT 1036 1035 1041 CONECT 1037 1035 1038 1039 1054 CONECT 1038 1037 1061 CONECT 1039 1037 1040 1041 1055 CONECT 1040 1039 1056 CONECT 1041 1036 1039 1042 1057 CONECT 1042 1041 1043 1049 CONECT 1043 1042 1044 1045 CONECT 1044 1043 CONECT 1045 1043 1046 CONECT 1046 1045 1047 1048 CONECT 1047 1046 1058 1059 CONECT 1048 1046 1049 1050 CONECT 1049 1042 1048 1060 CONECT 1050 1048 CONECT 1051 1034 CONECT 1052 1034 CONECT 1053 1035 CONECT 1054 1037 CONECT 1055 1039 CONECT 1056 1040 CONECT 1057 1041 CONECT 1058 1047 CONECT 1059 1047 CONECT 1060 1049 CONECT 1061 1038 CONECT 1134 1182 CONECT 1160 1166 1167 1184 CONECT 1161 1162 1165 1166 CONECT 1162 1161 1168 1171 CONECT 1163 1182 CONECT 1164 1182 CONECT 1165 1161 1172 1177 CONECT 1166 1160 1161 CONECT 1167 1160 1168 CONECT 1168 1162 1167 1169 CONECT 1169 1168 1170 1196 CONECT 1170 1169 1187 1188 1197 CONECT 1171 1162 1172 CONECT 1172 1165 1171 1185 CONECT 1173 1174 1182 CONECT 1174 1173 1175 1189 1190 CONECT 1175 1174 1176 1180 1191 CONECT 1176 1175 1177 CONECT 1177 1165 1176 1178 1186 CONECT 1178 1177 1179 1180 1193 CONECT 1179 1178 1194 CONECT 1180 1175 1178 1181 1192 CONECT 1181 1180 1195 1198 CONECT 1182 1134 1163 1164 1173 CONECT 1182 1183 CONECT 1183 1182 CONECT 1184 1160 CONECT 1185 1172 CONECT 1186 1177 CONECT 1187 1170 CONECT 1188 1170 CONECT 1189 1174 CONECT 1190 1174 CONECT 1191 1175 CONECT 1192 1180 CONECT 1193 1178 CONECT 1194 1179 CONECT 1195 1181 CONECT 1196 1169 CONECT 1197 1170 CONECT 1198 1181 CONECT 1330 708 1366 CONECT 1366 1330 MASTER 437 0 12 0 0 0 26 6 932 4 306 4 END