HEADER HYDROLASE 22-AUG-16 5LS3 TITLE CRYSTAL STRUCTURE OF METALLO-BETA-LACTAMASE SPM-1 WITH Y58C MUTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE IMP-1; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: BETA-LACTAMASE SPM-1,METALLO-B-LACTAMASE,METALLO-BETA- COMPND 5 LACTAMASE BLASPM-1,SPM-1; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: SPM-1, BLA SPM-1, BLASPM-1, CCBH4851_00081, ICEPAESP_00028; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: POPIN-F KEYWDS METALLO-BETA-LACTAMASE, CARBAPENEMASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.HINCHLIFFE,J.SPENCER REVDAT 5 17-JAN-24 5LS3 1 LINK REVDAT 4 13-SEP-17 5LS3 1 REMARK REVDAT 3 12-JUL-17 5LS3 1 REVDAT 2 29-MAR-17 5LS3 1 JRNL REVDAT 1 15-MAR-17 5LS3 0 JRNL AUTH M.I.ABBOUD,P.HINCHLIFFE,J.BREM,R.MACSICS,I.PFEFFER,A.MAKENA, JRNL AUTH 2 K.D.UMLAND,A.M.RYDZIK,G.B.LI,J.SPENCER,T.D.CLARIDGE, JRNL AUTH 3 C.J.SCHOFIELD JRNL TITL (19) F-NMR REVEALS THE ROLE OF MOBILE LOOPS IN PRODUCT AND JRNL TITL 2 INHIBITOR BINDING BY THE SAO PAULO METALLO-BETA-LACTAMASE. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 56 3862 2017 JRNL REFN ESSN 1521-3773 JRNL PMID 28252254 JRNL DOI 10.1002/ANIE.201612185 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 50435 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2667 - 4.5912 0.99 3011 156 0.1660 0.1686 REMARK 3 2 4.5912 - 3.6464 0.99 2826 164 0.1447 0.1332 REMARK 3 3 3.6464 - 3.1861 0.99 2757 148 0.1529 0.1742 REMARK 3 4 3.1861 - 2.8951 0.99 2754 123 0.1701 0.1921 REMARK 3 5 2.8951 - 2.6877 0.98 2704 136 0.1752 0.2033 REMARK 3 6 2.6877 - 2.5293 0.98 2698 127 0.1677 0.2190 REMARK 3 7 2.5293 - 2.4027 0.98 2680 140 0.1736 0.2051 REMARK 3 8 2.4027 - 2.2982 0.98 2661 132 0.1692 0.2173 REMARK 3 9 2.2982 - 2.2097 0.98 2690 128 0.1718 0.2022 REMARK 3 10 2.2097 - 2.1335 0.98 2609 144 0.1680 0.1973 REMARK 3 11 2.1335 - 2.0668 0.98 2621 142 0.1691 0.2149 REMARK 3 12 2.0668 - 2.0078 0.98 2656 139 0.1686 0.1805 REMARK 3 13 2.0078 - 1.9549 0.97 2636 136 0.1776 0.2019 REMARK 3 14 1.9549 - 1.9072 0.97 2608 135 0.1849 0.2402 REMARK 3 15 1.9072 - 1.8639 0.97 2592 144 0.1860 0.2100 REMARK 3 16 1.8639 - 1.8242 0.97 2590 133 0.1831 0.2367 REMARK 3 17 1.8242 - 1.7877 0.97 2600 135 0.1949 0.2050 REMARK 3 18 1.7877 - 1.7540 0.85 2257 123 0.2206 0.2751 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.100 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3900 REMARK 3 ANGLE : 1.159 5267 REMARK 3 CHIRALITY : 0.051 583 REMARK 3 PLANARITY : 0.006 672 REMARK 3 DIHEDRAL : 12.362 1463 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 31 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1132 32.5646 -16.2761 REMARK 3 T TENSOR REMARK 3 T11: 0.2020 T22: 0.1155 REMARK 3 T33: 0.1591 T12: 0.0283 REMARK 3 T13: 0.0269 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 2.5699 L22: 2.7254 REMARK 3 L33: 3.0066 L12: 0.7446 REMARK 3 L13: 0.7750 L23: 0.4458 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: -0.1848 S13: 0.2182 REMARK 3 S21: 0.2180 S22: -0.0070 S23: 0.1027 REMARK 3 S31: -0.3029 S32: -0.1218 S33: -0.0024 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 143 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.8548 26.6061 -10.6624 REMARK 3 T TENSOR REMARK 3 T11: 0.6918 T22: 0.7996 REMARK 3 T33: 0.6949 T12: -0.0862 REMARK 3 T13: 0.2185 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 2.4040 L22: 4.6982 REMARK 3 L33: 3.4343 L12: 2.6469 REMARK 3 L13: 2.3064 L23: 3.9832 REMARK 3 S TENSOR REMARK 3 S11: 0.6828 S12: -0.8214 S13: -0.0645 REMARK 3 S21: 1.3656 S22: -0.6034 S23: 1.0091 REMARK 3 S31: 1.0816 S32: -1.6301 S33: -0.0696 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.9707 19.3025 -18.5188 REMARK 3 T TENSOR REMARK 3 T11: 0.1605 T22: 0.1142 REMARK 3 T33: 0.1634 T12: 0.0184 REMARK 3 T13: -0.0101 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 1.9958 L22: 2.7253 REMARK 3 L33: 2.8686 L12: 0.1460 REMARK 3 L13: 0.7664 L23: -0.8085 REMARK 3 S TENSOR REMARK 3 S11: 0.1336 S12: -0.0043 S13: -0.2111 REMARK 3 S21: 0.0959 S22: 0.0210 S23: -0.1675 REMARK 3 S31: 0.1622 S32: 0.1378 S33: -0.1266 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 292 THROUGH 310 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7106 6.4404 -8.1271 REMARK 3 T TENSOR REMARK 3 T11: 0.4338 T22: 0.1900 REMARK 3 T33: 0.4366 T12: -0.0021 REMARK 3 T13: -0.1632 T23: 0.0674 REMARK 3 L TENSOR REMARK 3 L11: 5.7844 L22: 7.0467 REMARK 3 L33: 5.6630 L12: 4.1445 REMARK 3 L13: -0.3014 L23: 1.0965 REMARK 3 S TENSOR REMARK 3 S11: 0.1058 S12: -0.1957 S13: -0.6623 REMARK 3 S21: 0.2755 S22: 0.1381 S23: 0.4676 REMARK 3 S31: 0.8021 S32: -0.2672 S33: -0.2292 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.6923 28.9386 19.3122 REMARK 3 T TENSOR REMARK 3 T11: 0.2203 T22: 0.1451 REMARK 3 T33: 0.1711 T12: -0.0083 REMARK 3 T13: 0.0058 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.6416 L22: 2.5420 REMARK 3 L33: 3.3894 L12: -0.3180 REMARK 3 L13: 0.2945 L23: -0.5042 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: 0.0440 S13: 0.1680 REMARK 3 S21: 0.0138 S22: -0.0361 S23: -0.0133 REMARK 3 S31: -0.5118 S32: 0.0031 S33: 0.0525 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7542 27.0260 6.8795 REMARK 3 T TENSOR REMARK 3 T11: 0.7473 T22: 0.8305 REMARK 3 T33: 0.6280 T12: -0.1139 REMARK 3 T13: 0.2046 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 4.6348 L22: 7.4027 REMARK 3 L33: 8.9428 L12: -3.6325 REMARK 3 L13: 2.2761 L23: -4.9192 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: 1.7306 S13: 0.1080 REMARK 3 S21: -1.9216 S22: -0.3446 S23: -0.8000 REMARK 3 S31: 0.9787 S32: 0.6724 S33: 0.2389 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.9321 15.3923 19.9453 REMARK 3 T TENSOR REMARK 3 T11: 0.1353 T22: 0.1390 REMARK 3 T33: 0.1760 T12: 0.0226 REMARK 3 T13: 0.0287 T23: 0.0265 REMARK 3 L TENSOR REMARK 3 L11: 2.0020 L22: 2.4028 REMARK 3 L33: 3.2182 L12: 0.5071 REMARK 3 L13: 0.0118 L23: 0.5167 REMARK 3 S TENSOR REMARK 3 S11: -0.1180 S12: -0.0232 S13: -0.0927 REMARK 3 S21: 0.0002 S22: -0.0049 S23: 0.0937 REMARK 3 S31: 0.0033 S32: -0.1693 S33: 0.1324 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 292 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1712 4.1549 7.5479 REMARK 3 T TENSOR REMARK 3 T11: 0.2788 T22: 0.2799 REMARK 3 T33: 0.3900 T12: -0.0818 REMARK 3 T13: 0.0396 T23: -0.0566 REMARK 3 L TENSOR REMARK 3 L11: 8.7317 L22: 4.4921 REMARK 3 L33: 8.0290 L12: -6.0071 REMARK 3 L13: -6.7876 L23: 5.6634 REMARK 3 S TENSOR REMARK 3 S11: -0.2063 S12: 0.5546 S13: -0.7620 REMARK 3 S21: 0.0456 S22: -0.2805 S23: 0.3941 REMARK 3 S31: 0.5740 S32: -0.4197 S33: 0.4837 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LS3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1200001264. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96862 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50459 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 29.263 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 25.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.8 REMARK 200 DATA REDUNDANCY IN SHELL : 24.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4BP0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MIXTURE OF HEPES AND MOPS PH7.5, REMARK 280 0.03 M NAF, 0.03 M NAI, 0.03 M NAB, 12% PEG3350, 12% PEG1000, 12% REMARK 280 2-METHYL-2,4-PENTANEDIOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 138.05750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 29.94300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 29.94300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 69.02875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 29.94300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 29.94300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 207.08625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 29.94300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 29.94300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 69.02875 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 29.94300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 29.94300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 207.08625 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 138.05750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 548 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 27 REMARK 465 PRO B 28 REMARK 465 LYS B 29 REMARK 465 SER B 30 REMARK 465 LEU B 311 REMARK 465 GLY A 27 REMARK 465 PRO A 28 REMARK 465 LYS A 29 REMARK 465 SER A 30 REMARK 465 SER A 31 REMARK 465 ARG A 145 REMARK 465 ILE A 146 REMARK 465 LYS A 147 REMARK 465 ALA A 148 REMARK 465 ALA A 149 REMARK 465 GLU A 150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 638 O HOH B 643 2.02 REMARK 500 O HOH A 639 O HOH A 651 2.15 REMARK 500 OE2 GLU B 303 O HOH B 501 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 311 CA - CB - CG ANGL. DEV. = 16.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 57 77.18 -111.74 REMARK 500 SER B 76 -161.10 71.67 REMARK 500 LYS B 98 60.20 34.93 REMARK 500 HIS B 108 -179.90 -171.58 REMARK 500 ALA B 196 -96.75 -155.83 REMARK 500 PHE A 57 77.25 -113.57 REMARK 500 SER A 76 -159.51 71.44 REMARK 500 LYS A 98 62.48 39.07 REMARK 500 HIS A 108 -179.96 -171.24 REMARK 500 LYS A 153 -106.30 -46.19 REMARK 500 ALA A 196 -96.51 -155.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 33 NE2 REMARK 620 2 ASP B 35 OD2 117.3 REMARK 620 3 HIS A 33 NE2 125.2 104.2 REMARK 620 4 ASP A 35 OD1 84.0 140.5 85.8 REMARK 620 5 ASP A 35 OD2 105.0 87.7 111.1 53.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 108 NE2 REMARK 620 2 HIS B 110 ND1 98.0 REMARK 620 3 HIS B 197 NE2 107.3 102.6 REMARK 620 4 HOH B 566 O 119.3 112.9 114.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 112 OD2 REMARK 620 2 CYS B 216 SG 92.4 REMARK 620 3 HIS B 258 NE2 89.5 106.7 REMARK 620 4 HOH B 566 O 92.0 119.2 134.0 REMARK 620 5 HOH B 638 O 163.4 102.9 80.0 86.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 108 NE2 REMARK 620 2 HIS A 110 ND1 99.9 REMARK 620 3 HIS A 197 NE2 107.8 101.2 REMARK 620 4 HOH A 586 O 118.7 117.2 110.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 112 OD2 REMARK 620 2 CYS A 216 SG 100.8 REMARK 620 3 HIS A 258 NE2 93.8 112.4 REMARK 620 4 HOH A 586 O 96.4 117.6 125.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 DBREF 5LS3 B 29 311 UNP Q8G9Q0 Q8G9Q0_PSEAI 29 276 DBREF 5LS3 A 29 311 UNP Q8G9Q0 Q8G9Q0_PSEAI 29 276 SEQADV 5LS3 GLY B 27 UNP Q8G9Q0 EXPRESSION TAG SEQADV 5LS3 PRO B 28 UNP Q8G9Q0 EXPRESSION TAG SEQADV 5LS3 CYS B 58 UNP Q8G9Q0 TYR 58 ENGINEERED MUTATION SEQADV 5LS3 GLY A 27 UNP Q8G9Q0 EXPRESSION TAG SEQADV 5LS3 PRO A 28 UNP Q8G9Q0 EXPRESSION TAG SEQADV 5LS3 CYS A 58 UNP Q8G9Q0 TYR 58 ENGINEERED MUTATION SEQRES 1 B 250 GLY PRO LYS SER SER ASP HIS VAL ASP LEU PRO TYR ASN SEQRES 2 B 250 LEU THR ALA THR LYS ILE ASP SER ASP VAL PHE VAL VAL SEQRES 3 B 250 THR ASP ARG ASP PHE CYS SER SER ASN VAL LEU VAL ALA SEQRES 4 B 250 LYS MET LEU ASP GLY THR VAL VAL ILE VAL SER SER PRO SEQRES 5 B 250 PHE GLU ASN LEU GLY THR GLN THR LEU MET ASP TRP VAL SEQRES 6 B 250 ALA LYS THR MET LYS PRO LYS LYS VAL VAL ALA ILE ASN SEQRES 7 B 250 THR HIS PHE HIS LEU ASP GLY THR GLY GLY ASN GLU ILE SEQRES 8 B 250 TYR LYS LYS MET GLY ALA GLU THR TRP SER SER ASP LEU SEQRES 9 B 250 THR LYS GLN LEU ARG LEU GLU GLU ASN LYS LYS ASP ARG SEQRES 10 B 250 ILE LYS ALA ALA GLU PHE TYR LYS ASN GLU ASP LEU LYS SEQRES 11 B 250 ARG ARG ILE LEU SER SER HIS PRO VAL PRO ALA ASP ASN SEQRES 12 B 250 VAL PHE ASP LEU LYS GLN GLY LYS VAL PHE SER PHE SER SEQRES 13 B 250 ASN GLU LEU VAL GLU VAL SER PHE PRO GLY PRO ALA HIS SEQRES 14 B 250 SER PRO ASP ASN VAL VAL VAL TYR PHE PRO LYS LYS LYS SEQRES 15 B 250 LEU LEU PHE GLY GLY CYS MET ILE LYS PRO LYS GLU LEU SEQRES 16 B 250 GLY TYR LEU GLY ASP ALA ASN VAL LYS ALA TRP PRO ASP SEQRES 17 B 250 SER ALA ARG ARG LEU LYS LYS PHE ASP ALA LYS ILE VAL SEQRES 18 B 250 ILE PRO GLY HIS GLY GLU TRP GLY GLY PRO GLU MET VAL SEQRES 19 B 250 ASN LYS THR ILE LYS VAL ALA GLU LYS ALA VAL GLY GLU SEQRES 20 B 250 MET ARG LEU SEQRES 1 A 250 GLY PRO LYS SER SER ASP HIS VAL ASP LEU PRO TYR ASN SEQRES 2 A 250 LEU THR ALA THR LYS ILE ASP SER ASP VAL PHE VAL VAL SEQRES 3 A 250 THR ASP ARG ASP PHE CYS SER SER ASN VAL LEU VAL ALA SEQRES 4 A 250 LYS MET LEU ASP GLY THR VAL VAL ILE VAL SER SER PRO SEQRES 5 A 250 PHE GLU ASN LEU GLY THR GLN THR LEU MET ASP TRP VAL SEQRES 6 A 250 ALA LYS THR MET LYS PRO LYS LYS VAL VAL ALA ILE ASN SEQRES 7 A 250 THR HIS PHE HIS LEU ASP GLY THR GLY GLY ASN GLU ILE SEQRES 8 A 250 TYR LYS LYS MET GLY ALA GLU THR TRP SER SER ASP LEU SEQRES 9 A 250 THR LYS GLN LEU ARG LEU GLU GLU ASN LYS LYS ASP ARG SEQRES 10 A 250 ILE LYS ALA ALA GLU PHE TYR LYS ASN GLU ASP LEU LYS SEQRES 11 A 250 ARG ARG ILE LEU SER SER HIS PRO VAL PRO ALA ASP ASN SEQRES 12 A 250 VAL PHE ASP LEU LYS GLN GLY LYS VAL PHE SER PHE SER SEQRES 13 A 250 ASN GLU LEU VAL GLU VAL SER PHE PRO GLY PRO ALA HIS SEQRES 14 A 250 SER PRO ASP ASN VAL VAL VAL TYR PHE PRO LYS LYS LYS SEQRES 15 A 250 LEU LEU PHE GLY GLY CYS MET ILE LYS PRO LYS GLU LEU SEQRES 16 A 250 GLY TYR LEU GLY ASP ALA ASN VAL LYS ALA TRP PRO ASP SEQRES 17 A 250 SER ALA ARG ARG LEU LYS LYS PHE ASP ALA LYS ILE VAL SEQRES 18 A 250 ILE PRO GLY HIS GLY GLU TRP GLY GLY PRO GLU MET VAL SEQRES 19 A 250 ASN LYS THR ILE LYS VAL ALA GLU LYS ALA VAL GLY GLU SEQRES 20 A 250 MET ARG LEU HET ZN B 401 1 HET ZN B 402 1 HET ZN B 403 1 HET ZN A 401 1 HET ZN A 402 1 HETNAM ZN ZINC ION FORMUL 3 ZN 5(ZN 2+) FORMUL 8 HOH *374(H2 O) HELIX 1 AA1 GLU B 80 LYS B 98 1 17 HELIX 2 AA2 HIS B 110 GLY B 115 1 6 HELIX 3 AA3 GLY B 116 MET B 123 1 8 HELIX 4 AA4 ASP B 131 LYS B 142 1 12 HELIX 5 AA5 ASP B 144 ALA B 149 1 6 HELIX 6 AA6 GLU B 150 TYR B 152 5 3 HELIX 7 AA7 ASN B 154 SER B 164 1 11 HELIX 8 AA8 CYS B 216 ILE B 218 5 3 HELIX 9 AA9 ALA B 236 ARG B 243 1 8 HELIX 10 AB1 LEU B 244 PHE B 247 5 4 HELIX 11 AB2 PRO B 292 ARG B 310 1 19 HELIX 12 AB3 GLU A 80 LYS A 98 1 17 HELIX 13 AB4 HIS A 110 GLY A 115 1 6 HELIX 14 AB5 GLY A 116 MET A 123 1 8 HELIX 15 AB6 ASP A 131 LYS A 143 1 13 HELIX 16 AB7 ASN A 154 SER A 164 1 11 HELIX 17 AB8 CYS A 216 ILE A 218 5 3 HELIX 18 AB9 ALA A 236 LEU A 244 1 9 HELIX 19 AC1 LYS A 245 PHE A 247 5 3 HELIX 20 AC2 PRO A 292 ARG A 310 1 19 SHEET 1 AA1 8 HIS B 33 LEU B 36 0 SHEET 2 AA1 8 LEU B 40 ASP B 46 -1 O LEU B 40 N LEU B 36 SHEET 3 AA1 8 VAL B 49 ASP B 54 -1 O VAL B 51 N THR B 43 SHEET 4 AA1 8 SER B 60 LYS B 66 -1 O VAL B 62 N VAL B 52 SHEET 5 AA1 8 THR B 71 VAL B 75 -1 O VAL B 73 N ALA B 65 SHEET 6 AA1 8 LYS B 101 ILE B 105 1 O ILE B 105 N ILE B 74 SHEET 7 AA1 8 GLU B 126 SER B 130 1 O GLU B 126 N VAL B 102 SHEET 8 AA1 8 ASN B 171 PHE B 173 1 O ASN B 171 N THR B 127 SHEET 1 AA2 5 LYS B 179 PHE B 183 0 SHEET 2 AA2 5 GLU B 186 SER B 191 -1 O VAL B 190 N LYS B 179 SHEET 3 AA2 5 VAL B 203 PHE B 206 -1 O TYR B 205 N GLU B 189 SHEET 4 AA2 5 LEU B 211 GLY B 215 -1 O PHE B 213 N VAL B 204 SHEET 5 AA2 5 ILE B 253 PRO B 256 1 O ILE B 255 N LEU B 212 SHEET 1 AA3 8 VAL A 34 LEU A 36 0 SHEET 2 AA3 8 LEU A 40 ASP A 46 -1 O LEU A 40 N LEU A 36 SHEET 3 AA3 8 VAL A 49 ASP A 54 -1 O THR A 53 N THR A 41 SHEET 4 AA3 8 SER A 60 LYS A 66 -1 O VAL A 62 N VAL A 52 SHEET 5 AA3 8 THR A 71 VAL A 75 -1 O VAL A 73 N ALA A 65 SHEET 6 AA3 8 LYS A 101 ILE A 105 1 O LYS A 101 N VAL A 72 SHEET 7 AA3 8 GLU A 126 SER A 130 1 O GLU A 126 N ALA A 104 SHEET 8 AA3 8 ASN A 171 PHE A 173 1 O ASN A 171 N SER A 129 SHEET 1 AA4 5 LYS A 179 PHE A 183 0 SHEET 2 AA4 5 GLU A 186 SER A 191 -1 O GLU A 186 N PHE A 183 SHEET 3 AA4 5 VAL A 203 PHE A 206 -1 O TYR A 205 N GLU A 189 SHEET 4 AA4 5 LEU A 211 GLY A 215 -1 O PHE A 213 N VAL A 204 SHEET 5 AA4 5 ILE A 253 PRO A 256 1 O ILE A 255 N LEU A 212 LINK NE2 HIS B 33 ZN ZN B 403 1555 1555 2.05 LINK OD2 ASP B 35 ZN ZN B 403 1555 1555 2.04 LINK NE2 HIS B 108 ZN ZN B 401 1555 1555 2.09 LINK ND1 HIS B 110 ZN ZN B 401 1555 1555 2.07 LINK OD2 ASP B 112 ZN ZN B 402 1555 1555 2.13 LINK NE2 HIS B 197 ZN ZN B 401 1555 1555 2.04 LINK SG CYS B 216 ZN ZN B 402 1555 1555 2.29 LINK NE2 HIS B 258 ZN ZN B 402 1555 1555 2.09 LINK ZN ZN B 401 O HOH B 566 1555 1555 1.87 LINK ZN ZN B 402 O HOH B 566 1555 1555 2.06 LINK ZN ZN B 402 O HOH B 638 1555 1555 2.66 LINK ZN ZN B 403 NE2 HIS A 33 1555 1555 2.13 LINK ZN ZN B 403 OD1 ASP A 35 1555 1555 2.68 LINK ZN ZN B 403 OD2 ASP A 35 1555 1555 2.04 LINK NE2 HIS A 108 ZN ZN A 402 1555 1555 2.05 LINK ND1 HIS A 110 ZN ZN A 402 1555 1555 2.06 LINK OD2 ASP A 112 ZN ZN A 401 1555 1555 1.98 LINK NE2 HIS A 197 ZN ZN A 402 1555 1555 2.09 LINK SG CYS A 216 ZN ZN A 401 1555 1555 2.26 LINK NE2 HIS A 258 ZN ZN A 401 1555 1555 2.06 LINK ZN ZN A 401 O HOH A 586 1555 1555 1.98 LINK ZN ZN A 402 O HOH A 586 1555 1555 1.89 SITE 1 AC1 5 HIS B 108 HIS B 110 HIS B 197 ZN B 402 SITE 2 AC1 5 HOH B 566 SITE 1 AC2 6 ASP B 112 CYS B 216 HIS B 258 ZN B 401 SITE 2 AC2 6 HOH B 566 HOH B 638 SITE 1 AC3 4 HIS A 33 ASP A 35 HIS B 33 ASP B 35 SITE 1 AC4 5 ASP A 112 CYS A 216 HIS A 258 ZN A 402 SITE 2 AC4 5 HOH A 586 SITE 1 AC5 5 HIS A 108 HIS A 110 HIS A 197 ZN A 401 SITE 2 AC5 5 HOH A 586 CRYST1 59.886 59.886 276.115 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016698 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003622 0.00000