HEADER TRANSFERASE 05-SEP-16 5LSS
TITLE STRUCTURE OF THE EPIGENETIC ONCOGENE MMSET AND INHIBITION BY N-ALKYL
TITLE 2 SINEFUNGIN DERIVATIVES
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETD2;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 1433-1711;
COMPND 5 SYNONYM: HIF-1,HUNTINGTIN YEAST PARTNER B,HUNTINGTIN-INTERACTING
COMPND 6 PROTEIN 1,HIP-1,HUNTINGTIN-INTERACTING PROTEIN B,LYSINE N-
COMPND 7 METHYLTRANSFERASE 3A,SET DOMAIN-CONTAINING PROTEIN 2,HSET2,P231HBP;
COMPND 8 EC: 2.1.1.43;
COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: SETD2, HIF1, HYPB, KIAA1732, KMT3A, SET2, HSPC069;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODON PLUS
KEYWDS LYSINE METHYLTRANSFERASE, MMSET, SETD2, SET DOMAIN, SETD2#1,
KEYWDS 2 TRANSFERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR D.TISI,P.PATHURI
REVDAT 4 08-MAY-24 5LSS 1 REMARK
REVDAT 3 16-OCT-19 5LSS 1 REMARK
REVDAT 2 21-DEC-16 5LSS 1 JRNL
REVDAT 1 05-OCT-16 5LSS 0
JRNL AUTH D.TISI,E.CHIARPARIN,E.TAMANINI,P.PATHURI,J.E.COYLE,A.HOLD,
JRNL AUTH 2 F.P.HOLDING,N.AMIN,A.C.MARTIN,S.J.RICH,V.BERDINI,J.YON,
JRNL AUTH 3 P.ACKLAM,R.BURKE,L.DROUIN,J.E.HARMER,F.JEGANATHAN,
JRNL AUTH 4 R.L.VAN MONTFORT,Y.NEWBATT,M.TORTORICI,M.WESTLAKE,A.WOOD,
JRNL AUTH 5 S.HOELDER,T.D.HEIGHTMAN
JRNL TITL STRUCTURE OF THE EPIGENETIC ONCOGENE MMSET AND INHIBITION BY
JRNL TITL 2 N-ALKYL SINEFUNGIN DERIVATIVES.
JRNL REF ACS CHEM. BIOL. V. 11 3093 2016
JRNL REFN ESSN 1554-8937
JRNL PMID 27571355
JRNL DOI 10.1021/ACSCHEMBIO.6B00308
REMARK 2
REMARK 2 RESOLUTION. 1.79 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0131
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.29
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 87.5
REMARK 3 NUMBER OF REFLECTIONS : 20681
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.165
REMARK 3 R VALUE (WORKING SET) : 0.162
REMARK 3 FREE R VALUE : 0.226
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1089
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84
REMARK 3 REFLECTION IN BIN (WORKING SET) : 803
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 46.80
REMARK 3 BIN R VALUE (WORKING SET) : 0.2520
REMARK 3 BIN FREE R VALUE SET COUNT : 46
REMARK 3 BIN FREE R VALUE : 0.2450
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1901
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 36
REMARK 3 SOLVENT ATOMS : 277
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.65
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.79000
REMARK 3 B22 (A**2) : -0.82000
REMARK 3 B33 (A**2) : 1.61000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.135
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.527
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2019 ; 0.011 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 1854 ; 0.002 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2721 ; 1.417 ; 1.945
REMARK 3 BOND ANGLES OTHERS (DEGREES): 4281 ; 0.915 ; 2.977
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 247 ; 5.607 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;36.571 ;24.019
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 373 ;13.996 ;15.322
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;13.862 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 278 ; 0.087 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2320 ; 0.000 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): 496 ; 0.000 ; 0.021
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 962 ; 1.823 ; 3.506
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 960 ; 1.783 ; 3.491
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1057 ; 2.433 ; 4.089
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1057 ; 2.433 ; 4.089
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 744 ; 6.034 ; 8.255
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 745 ; 6.030 ; 8.255
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 1444 A 1690
REMARK 3 ORIGIN FOR THE GROUP (A): -1.6905 -19.3903 14.6707
REMARK 3 T TENSOR
REMARK 3 T11: 0.0536 T22: 0.0725
REMARK 3 T33: 0.0062 T12: -0.0134
REMARK 3 T13: -0.0031 T23: 0.0181
REMARK 3 L TENSOR
REMARK 3 L11: 1.9476 L22: 1.7615
REMARK 3 L33: 1.7466 L12: -0.3167
REMARK 3 L13: -0.3380 L23: 0.4481
REMARK 3 S TENSOR
REMARK 3 S11: -0.0418 S12: -0.1662 S13: -0.0125
REMARK 3 S21: 0.1799 S22: -0.0077 S23: 0.0078
REMARK 3 S31: 0.0496 S32: 0.0414 S33: 0.0495
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 5LSS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-SEP-16.
REMARK 100 THE DEPOSITION ID IS D_1200001302.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 28-FEB-13
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : DIAMOND
REMARK 200 BEAMLINE : I03
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 300K
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : SCALA
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 109861
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790
REMARK 200 RESOLUTION RANGE LOW (A) : 54.300
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 87.9
REMARK 200 DATA REDUNDANCY : 4.900
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.8000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS
REMARK 200 SOFTWARE USED: REFMAC
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 34.33
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M KSCN, 31.0%W/V PEG 3350, 0.1M
REMARK 280 HEPES/NAOHPH=7, PH 7, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE
REMARK 280 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.66500
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.17900
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.60800
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.17900
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.66500
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.60800
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 13610 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1417
REMARK 465 HIS A 1418
REMARK 465 HIS A 1419
REMARK 465 HIS A 1420
REMARK 465 HIS A 1421
REMARK 465 HIS A 1422
REMARK 465 HIS A 1423
REMARK 465 SER A 1424
REMARK 465 SER A 1425
REMARK 465 GLY A 1426
REMARK 465 ARG A 1427
REMARK 465 GLU A 1428
REMARK 465 ASN A 1429
REMARK 465 LEU A 1430
REMARK 465 TYR A 1431
REMARK 465 PHE A 1432
REMARK 465 GLN A 1433
REMARK 465 GLY A 1434
REMARK 465 GLU A 1435
REMARK 465 THR A 1436
REMARK 465 SER A 1437
REMARK 465 VAL A 1438
REMARK 465 PRO A 1439
REMARK 465 PRO A 1440
REMARK 465 GLY A 1441
REMARK 465 SER A 1442
REMARK 465 ALA A 1443
REMARK 465 LYS A 1487
REMARK 465 ASN A 1488
REMARK 465 LYS A 1489
REMARK 465 SER A 1490
REMARK 465 HIS A 1491
REMARK 465 ARG A 1492
REMARK 465 ASP A 1493
REMARK 465 ILE A 1494
REMARK 465 LYS A 1495
REMARK 465 ARG A 1496
REMARK 465 GLY A 1691
REMARK 465 GLU A 1692
REMARK 465 ASN A 1693
REMARK 465 ARG A 1694
REMARK 465 VAL A 1695
REMARK 465 SER A 1696
REMARK 465 ILE A 1697
REMARK 465 ARG A 1698
REMARK 465 ALA A 1699
REMARK 465 ALA A 1700
REMARK 465 GLY A 1701
REMARK 465 GLY A 1702
REMARK 465 LYS A 1703
REMARK 465 MET A 1704
REMARK 465 LYS A 1705
REMARK 465 LYS A 1706
REMARK 465 GLU A 1707
REMARK 465 ARG A 1708
REMARK 465 SER A 1709
REMARK 465 ARG A 1710
REMARK 465 LYS A 1711
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LEU A1444 CG CD1 CD2
REMARK 470 LYS A1486 CG CD CE NZ
REMARK 470 MET A1497 CG SD CE
REMARK 470 ILE A1514 CD1
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASN A1541 40.53 -108.09
REMARK 500 VAL A1576 -67.11 -97.79
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A2177 DISTANCE = 6.30 ANGSTROMS
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A1801 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A1499 SG
REMARK 620 2 CYS A1501 SG 105.5
REMARK 620 3 CYS A1516 SG 106.6 104.5
REMARK 620 4 CYS A1520 SG 116.8 108.8 113.6
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A1802 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A1516 SG
REMARK 620 2 CYS A1529 SG 115.3
REMARK 620 3 CYS A1533 SG 95.8 117.6
REMARK 620 4 CYS A1539 SG 112.6 102.0 114.3
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 ZN A1803 ZN
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 CYS A1631 SG
REMARK 620 2 CYS A1678 SG 111.0
REMARK 620 3 CYS A1680 SG 107.1 108.9
REMARK 620 4 CYS A1685 SG 108.3 110.0 111.6
REMARK 620 N 1 2 3
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1801
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1802
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1803
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 1804
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 76H A 1805
DBREF 5LSS A 1433 1711 UNP Q9BYW2 SETD2_HUMAN 1433 1711
SEQADV 5LSS MET A 1417 UNP Q9BYW2 INITIATING METHIONINE
SEQADV 5LSS HIS A 1418 UNP Q9BYW2 EXPRESSION TAG
SEQADV 5LSS HIS A 1419 UNP Q9BYW2 EXPRESSION TAG
SEQADV 5LSS HIS A 1420 UNP Q9BYW2 EXPRESSION TAG
SEQADV 5LSS HIS A 1421 UNP Q9BYW2 EXPRESSION TAG
SEQADV 5LSS HIS A 1422 UNP Q9BYW2 EXPRESSION TAG
SEQADV 5LSS HIS A 1423 UNP Q9BYW2 EXPRESSION TAG
SEQADV 5LSS SER A 1424 UNP Q9BYW2 EXPRESSION TAG
SEQADV 5LSS SER A 1425 UNP Q9BYW2 EXPRESSION TAG
SEQADV 5LSS GLY A 1426 UNP Q9BYW2 EXPRESSION TAG
SEQADV 5LSS ARG A 1427 UNP Q9BYW2 EXPRESSION TAG
SEQADV 5LSS GLU A 1428 UNP Q9BYW2 EXPRESSION TAG
SEQADV 5LSS ASN A 1429 UNP Q9BYW2 EXPRESSION TAG
SEQADV 5LSS LEU A 1430 UNP Q9BYW2 EXPRESSION TAG
SEQADV 5LSS TYR A 1431 UNP Q9BYW2 EXPRESSION TAG
SEQADV 5LSS PHE A 1432 UNP Q9BYW2 EXPRESSION TAG
SEQRES 1 A 295 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN
SEQRES 2 A 295 LEU TYR PHE GLN GLY GLU THR SER VAL PRO PRO GLY SER
SEQRES 3 A 295 ALA LEU VAL GLY PRO SER CYS VAL MET ASP ASP PHE ARG
SEQRES 4 A 295 ASP PRO GLN ARG TRP LYS GLU CYS ALA LYS GLN GLY LYS
SEQRES 5 A 295 MET PRO CYS TYR PHE ASP LEU ILE GLU GLU ASN VAL TYR
SEQRES 6 A 295 LEU THR GLU ARG LYS LYS ASN LYS SER HIS ARG ASP ILE
SEQRES 7 A 295 LYS ARG MET GLN CYS GLU CYS THR PRO LEU SER LYS ASP
SEQRES 8 A 295 GLU ARG ALA GLN GLY GLU ILE ALA CYS GLY GLU ASP CYS
SEQRES 9 A 295 LEU ASN ARG LEU LEU MET ILE GLU CYS SER SER ARG CYS
SEQRES 10 A 295 PRO ASN GLY ASP TYR CYS SER ASN ARG ARG PHE GLN ARG
SEQRES 11 A 295 LYS GLN HIS ALA ASP VAL GLU VAL ILE LEU THR GLU LYS
SEQRES 12 A 295 LYS GLY TRP GLY LEU ARG ALA ALA LYS ASP LEU PRO SER
SEQRES 13 A 295 ASN THR PHE VAL LEU GLU TYR CYS GLY GLU VAL LEU ASP
SEQRES 14 A 295 HIS LYS GLU PHE LYS ALA ARG VAL LYS GLU TYR ALA ARG
SEQRES 15 A 295 ASN LYS ASN ILE HIS TYR TYR PHE MET ALA LEU LYS ASN
SEQRES 16 A 295 ASP GLU ILE ILE ASP ALA THR GLN LYS GLY ASN CYS SER
SEQRES 17 A 295 ARG PHE MET ASN HIS SER CYS GLU PRO ASN CYS GLU THR
SEQRES 18 A 295 GLN LYS TRP THR VAL ASN GLY GLN LEU ARG VAL GLY PHE
SEQRES 19 A 295 PHE THR THR LYS LEU VAL PRO SER GLY SER GLU LEU THR
SEQRES 20 A 295 PHE ASP TYR GLN PHE GLN ARG TYR GLY LYS GLU ALA GLN
SEQRES 21 A 295 LYS CYS PHE CYS GLY SER ALA ASN CYS ARG GLY TYR LEU
SEQRES 22 A 295 GLY GLY GLU ASN ARG VAL SER ILE ARG ALA ALA GLY GLY
SEQRES 23 A 295 LYS MET LYS LYS GLU ARG SER ARG LYS
HET ZN A1801 1
HET ZN A1802 1
HET ZN A1803 1
HET SCN A1804 3
HET 76H A1805 60
HETNAM ZN ZINC ION
HETNAM SCN THIOCYANATE ION
HETNAM 76H [(2~{S},5~{R})-1-[(2~{R},3~{S},4~{R},5~{R})-5-(6-
HETNAM 2 76H AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]-5-
HETNAM 3 76H AZANIUMYL-6-OXIDANYL-6-OXIDANYLIDENE-HEXAN-2-YL]-
HETNAM 4 76H PROPYL-AZANIUM
FORMUL 2 ZN 3(ZN 2+)
FORMUL 5 SCN C N S 1-
FORMUL 6 76H C18 H31 N7 O5 2+
FORMUL 7 HOH *277(H2 O)
HELIX 1 AA1 ASP A 1452 ARG A 1455 5 4
HELIX 2 AA2 ASP A 1456 GLN A 1466 1 11
HELIX 3 AA3 SER A 1505 GLY A 1512 1 8
HELIX 4 AA4 CYS A 1520 LEU A 1525 1 6
HELIX 5 AA5 ASN A 1535 CYS A 1539 5 5
HELIX 6 AA6 ASP A 1585 ASN A 1599 1 15
HELIX 7 AA7 CYS A 1623 MET A 1627 5 5
SHEET 1 AA1 3 SER A1448 VAL A1450 0
SHEET 2 AA1 3 VAL A1552 LEU A1556 -1 O VAL A1554 N CYS A1449
SHEET 3 AA1 3 TRP A1562 ALA A1566 -1 O ARG A1565 N GLU A1553
SHEET 1 AA2 4 ASP A1474 LEU A1475 0
SHEET 2 AA2 4 GLU A1613 GLY A1621 1 O GLN A1619 N ASP A1474
SHEET 3 AA2 4 GLY A1581 LEU A1584 -1 N LEU A1584 O ILE A1614
SHEET 4 AA2 4 VAL A1480 TYR A1481 1 N VAL A1480 O VAL A1583
SHEET 1 AA3 3 ASP A1474 LEU A1475 0
SHEET 2 AA3 3 GLU A1613 GLY A1621 1 O GLN A1619 N ASP A1474
SHEET 3 AA3 3 PHE A1606 LYS A1610 -1 N MET A1607 O ILE A1615
SHEET 1 AA4 3 PHE A1575 GLU A1578 0
SHEET 2 AA4 3 GLN A1645 THR A1652 -1 O PHE A1650 N VAL A1576
SHEET 3 AA4 3 CYS A1635 VAL A1642 -1 N TRP A1640 O ARG A1647
SHEET 1 AA5 2 ASN A1628 HIS A1629 0
SHEET 2 AA5 2 THR A1663 PHE A1664 1 O PHE A1664 N ASN A1628
LINK SG CYS A1499 ZN ZN A1801 1555 1555 2.12
LINK SG CYS A1501 ZN ZN A1801 1555 1555 2.32
LINK SG CYS A1516 ZN ZN A1801 1555 1555 2.36
LINK SG CYS A1516 ZN ZN A1802 1555 1555 2.38
LINK SG CYS A1520 ZN ZN A1801 1555 1555 2.38
LINK SG CYS A1529 ZN ZN A1802 1555 1555 2.28
LINK SG CYS A1533 ZN ZN A1802 1555 1555 2.30
LINK SG CYS A1539 ZN ZN A1802 1555 1555 2.33
LINK SG CYS A1631 ZN ZN A1803 1555 1555 2.41
LINK SG CYS A1678 ZN ZN A1803 1555 1555 2.37
LINK SG CYS A1680 ZN ZN A1803 1555 1555 2.33
LINK SG CYS A1685 ZN ZN A1803 1555 1555 2.41
SITE 1 AC1 4 CYS A1499 CYS A1501 CYS A1516 CYS A1520
SITE 1 AC2 5 CYS A1516 CYS A1529 CYS A1533 CYS A1539
SITE 2 AC2 5 SCN A1804
SITE 1 AC3 4 CYS A1631 CYS A1678 CYS A1680 CYS A1685
SITE 1 AC4 8 MET A1497 CYS A1499 ASN A1522 CYS A1529
SITE 2 AC4 8 SER A1530 CYS A1533 PRO A1534 ZN A1802
SITE 1 AC5 24 LYS A1560 GLY A1561 TRP A1562 TYR A1579
SITE 2 AC5 24 ILE A1602 HIS A1603 TYR A1604 TYR A1605
SITE 3 AC5 24 ARG A1625 PHE A1626 MET A1627 ASN A1628
SITE 4 AC5 24 HIS A1629 TYR A1666 GLN A1676 LYS A1677
SITE 5 AC5 24 CYS A1678 PHE A1679 CYS A1680 LEU A1689
SITE 6 AC5 24 HOH A1904 HOH A1905 HOH A2009 HOH A2018
CRYST1 43.330 77.216 76.358 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.023079 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012951 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013096 0.00000