HEADER TRANSFERASE 05-SEP-16 5LSY TITLE STRUCTURE OF THE EPIGENETIC ONCOGENE MMSET AND INHIBITION BY N-ALKYL TITLE 2 SINEFUNGIN DERIVATIVES COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETD2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1433-1711; COMPND 5 SYNONYM: HIF-1,HUNTINGTIN YEAST PARTNER B,HUNTINGTIN-INTERACTING COMPND 6 PROTEIN 1,HIP-1,HUNTINGTIN-INTERACTING PROTEIN B,LYSINE N- COMPND 7 METHYLTRANSFERASE 3A,SET DOMAIN-CONTAINING PROTEIN 2,HSET2,P231HBP; COMPND 8 EC: 2.1.1.43; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SETD2, HIF1, HYPB, KIAA1732, KMT3A, SET2, HSPC069; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODON PLUS RIL KEYWDS LYSINE METHYLTRANSFERASE SETD2 SET DOMAIN, SETD2#1, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.TISI,P.PATHURI,T.HEIGHTMAN REVDAT 5 13-NOV-24 5LSY 1 REMARK REVDAT 4 17-JAN-24 5LSY 1 LINK REVDAT 3 16-OCT-19 5LSY 1 REMARK REVDAT 2 21-DEC-16 5LSY 1 JRNL REVDAT 1 12-OCT-16 5LSY 0 JRNL AUTH D.TISI,E.CHIARPARIN,E.TAMANINI,P.PATHURI,J.E.COYLE,A.HOLD, JRNL AUTH 2 F.P.HOLDING,N.AMIN,A.C.MARTIN,S.J.RICH,V.BERDINI,J.YON, JRNL AUTH 3 P.ACKLAM,R.BURKE,L.DROUIN,J.E.HARMER,F.JEGANATHAN, JRNL AUTH 4 R.L.VAN MONTFORT,Y.NEWBATT,M.TORTORICI,M.WESTLAKE,A.WOOD, JRNL AUTH 5 S.HOELDER,T.D.HEIGHTMAN JRNL TITL STRUCTURE OF THE EPIGENETIC ONCOGENE MMSET AND INHIBITION BY JRNL TITL 2 N-ALKYL SINEFUNGIN DERIVATIVES. JRNL REF ACS CHEM. BIOL. V. 11 3093 2016 JRNL REFN ESSN 1554-8937 JRNL PMID 27571355 JRNL DOI 10.1021/ACSCHEMBIO.6B00308 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0131 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 31691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1659 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1375 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 54.08 REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1964 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 405 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.103 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.073 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.856 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2090 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1932 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2821 ; 1.483 ; 1.949 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4464 ; 0.939 ; 2.975 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 257 ; 6.023 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;33.478 ;23.832 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 382 ;13.146 ;15.314 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.593 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 291 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2393 ; 0.000 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 508 ; 0.000 ; 0.021 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1002 ; 1.256 ; 2.002 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1000 ; 1.193 ; 1.992 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1088 ; 1.780 ; 2.381 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1088 ; 1.780 ; 2.381 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 764 ; 4.691 ; 4.793 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 765 ; 4.687 ; 4.791 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1434 A 1803 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8508 23.4739 30.9312 REMARK 3 T TENSOR REMARK 3 T11: 0.0222 T22: 0.0262 REMARK 3 T33: 0.0020 T12: -0.0074 REMARK 3 T13: 0.0031 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.9038 L22: 1.5540 REMARK 3 L33: 0.7917 L12: -0.8318 REMARK 3 L13: 0.1058 L23: -0.0705 REMARK 3 S TENSOR REMARK 3 S11: 0.0256 S12: 0.1886 S13: 0.0430 REMARK 3 S21: -0.0292 S22: -0.0144 S23: -0.0413 REMARK 3 S31: -0.1283 S32: 0.0626 S33: -0.0112 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LSY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001309. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 182683 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 46.893 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 3OOI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES, PH7.3, 0.1MKSCN, 25 REMARK 280 -30%MPEG2000, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.49150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.65400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.75200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.65400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.49150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.75200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1417 REMARK 465 HIS A 1418 REMARK 465 HIS A 1419 REMARK 465 HIS A 1420 REMARK 465 HIS A 1421 REMARK 465 HIS A 1422 REMARK 465 HIS A 1423 REMARK 465 SER A 1424 REMARK 465 SER A 1425 REMARK 465 GLY A 1426 REMARK 465 ARG A 1427 REMARK 465 GLU A 1428 REMARK 465 ASN A 1429 REMARK 465 LEU A 1430 REMARK 465 TYR A 1431 REMARK 465 PHE A 1432 REMARK 465 GLN A 1433 REMARK 465 GLU A 1484 REMARK 465 ARG A 1485 REMARK 465 LYS A 1486 REMARK 465 LYS A 1487 REMARK 465 ASN A 1488 REMARK 465 LYS A 1489 REMARK 465 SER A 1490 REMARK 465 HIS A 1491 REMARK 465 ARG A 1492 REMARK 465 ASP A 1493 REMARK 465 ILE A 1494 REMARK 465 LYS A 1495 REMARK 465 SER A 1505 REMARK 465 LYS A 1506 REMARK 465 ASP A 1507 REMARK 465 GLU A 1508 REMARK 465 ARG A 1509 REMARK 465 ALA A 1510 REMARK 465 GLN A 1511 REMARK 465 GLY A 1512 REMARK 465 ALA A 1700 REMARK 465 GLY A 1701 REMARK 465 GLY A 1702 REMARK 465 LYS A 1703 REMARK 465 MET A 1704 REMARK 465 LYS A 1705 REMARK 465 LYS A 1706 REMARK 465 GLU A 1707 REMARK 465 ARG A 1708 REMARK 465 SER A 1709 REMARK 465 ARG A 1710 REMARK 465 LYS A 1711 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 1546 O HOH A 1902 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A1445 -63.25 -97.04 REMARK 500 VAL A1576 -64.89 -90.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2295 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A2296 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A2297 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH A2298 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH A2299 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH A2300 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A2301 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A2302 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A2303 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A2304 DISTANCE = 6.87 ANGSTROMS REMARK 525 HOH A2305 DISTANCE = 7.08 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1499 SG REMARK 620 2 CYS A1501 SG 107.0 REMARK 620 3 CYS A1516 SG 109.9 103.2 REMARK 620 4 CYS A1520 SG 116.2 107.2 112.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1516 SG REMARK 620 2 CYS A1529 SG 115.0 REMARK 620 3 CYS A1533 SG 94.7 117.6 REMARK 620 4 CYS A1539 SG 113.4 104.0 112.6 REMARK 620 5 SCN A1804 S 95.0 59.4 64.7 151.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1803 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1631 SG REMARK 620 2 CYS A1678 SG 111.1 REMARK 620 3 CYS A1680 SG 108.8 107.9 REMARK 620 4 CYS A1685 SG 110.2 109.7 109.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN A 1804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 76M A 1805 DBREF 5LSY A 1433 1711 UNP Q9BYW2 SETD2_HUMAN 1433 1711 SEQADV 5LSY MET A 1417 UNP Q9BYW2 INITIATING METHIONINE SEQADV 5LSY HIS A 1418 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSY HIS A 1419 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSY HIS A 1420 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSY HIS A 1421 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSY HIS A 1422 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSY HIS A 1423 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSY SER A 1424 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSY SER A 1425 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSY GLY A 1426 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSY ARG A 1427 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSY GLU A 1428 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSY ASN A 1429 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSY LEU A 1430 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSY TYR A 1431 UNP Q9BYW2 EXPRESSION TAG SEQADV 5LSY PHE A 1432 UNP Q9BYW2 EXPRESSION TAG SEQRES 1 A 295 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 295 LEU TYR PHE GLN GLY GLU THR SER VAL PRO PRO GLY SER SEQRES 3 A 295 ALA LEU VAL GLY PRO SER CYS VAL MET ASP ASP PHE ARG SEQRES 4 A 295 ASP PRO GLN ARG TRP LYS GLU CYS ALA LYS GLN GLY LYS SEQRES 5 A 295 MET PRO CYS TYR PHE ASP LEU ILE GLU GLU ASN VAL TYR SEQRES 6 A 295 LEU THR GLU ARG LYS LYS ASN LYS SER HIS ARG ASP ILE SEQRES 7 A 295 LYS ARG MET GLN CYS GLU CYS THR PRO LEU SER LYS ASP SEQRES 8 A 295 GLU ARG ALA GLN GLY GLU ILE ALA CYS GLY GLU ASP CYS SEQRES 9 A 295 LEU ASN ARG LEU LEU MET ILE GLU CYS SER SER ARG CYS SEQRES 10 A 295 PRO ASN GLY ASP TYR CYS SER ASN ARG ARG PHE GLN ARG SEQRES 11 A 295 LYS GLN HIS ALA ASP VAL GLU VAL ILE LEU THR GLU LYS SEQRES 12 A 295 LYS GLY TRP GLY LEU ARG ALA ALA LYS ASP LEU PRO SER SEQRES 13 A 295 ASN THR PHE VAL LEU GLU TYR CYS GLY GLU VAL LEU ASP SEQRES 14 A 295 HIS LYS GLU PHE LYS ALA ARG VAL LYS GLU TYR ALA ARG SEQRES 15 A 295 ASN LYS ASN ILE HIS TYR TYR PHE MET ALA LEU LYS ASN SEQRES 16 A 295 ASP GLU ILE ILE ASP ALA THR GLN LYS GLY ASN CYS SER SEQRES 17 A 295 ARG PHE MET ASN HIS SER CYS GLU PRO ASN CYS GLU THR SEQRES 18 A 295 GLN LYS TRP THR VAL ASN GLY GLN LEU ARG VAL GLY PHE SEQRES 19 A 295 PHE THR THR LYS LEU VAL PRO SER GLY SER GLU LEU THR SEQRES 20 A 295 PHE ASP TYR GLN PHE GLN ARG TYR GLY LYS GLU ALA GLN SEQRES 21 A 295 LYS CYS PHE CYS GLY SER ALA ASN CYS ARG GLY TYR LEU SEQRES 22 A 295 GLY GLY GLU ASN ARG VAL SER ILE ARG ALA ALA GLY GLY SEQRES 23 A 295 LYS MET LYS LYS GLU ARG SER ARG LYS HET ZN A1801 1 HET ZN A1802 1 HET ZN A1803 1 HET SCN A1804 3 HET 76M A1805 63 HETNAM ZN ZINC ION HETNAM SCN THIOCYANATE ION HETNAM 76M [(2~{S},5~{R})-1-[(2~{R},3~{S},4~{R},5~{R})-5-(6- HETNAM 2 76M AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]-5- HETNAM 3 76M AZANIUMYL-6-OXIDANYL-6-OXIDANYLIDENE-HEXAN-2-YL]-(2- HETNAM 4 76M METHYLPROPYL)AZANIUM FORMUL 2 ZN 3(ZN 2+) FORMUL 5 SCN C N S 1- FORMUL 6 76M C19 H33 N7 O5 2+ FORMUL 7 HOH *405(H2 O) HELIX 1 AA1 VAL A 1450 ARG A 1455 5 6 HELIX 2 AA2 ASP A 1456 GLN A 1466 1 11 HELIX 3 AA3 CYS A 1520 LEU A 1525 1 6 HELIX 4 AA4 ASN A 1535 CYS A 1539 5 5 HELIX 5 AA5 ARG A 1542 LYS A 1547 1 6 HELIX 6 AA6 ASP A 1585 ASN A 1599 1 15 HELIX 7 AA7 ASN A 1622 MET A 1627 5 6 HELIX 8 AA8 TYR A 1666 TYR A 1671 1 6 SHEET 1 AA1 2 ASP A1474 LEU A1475 0 SHEET 2 AA1 2 LYS A1620 GLY A1621 1 O GLY A1621 N ASP A1474 SHEET 1 AA2 4 VAL A1480 TYR A1481 0 SHEET 2 AA2 4 GLU A1582 LEU A1584 1 O VAL A1583 N VAL A1480 SHEET 3 AA2 4 GLU A1613 ASP A1616 -1 O ILE A1614 N LEU A1584 SHEET 4 AA2 4 PHE A1606 LYS A1610 -1 N MET A1607 O ILE A1615 SHEET 1 AA3 4 VAL A1552 LEU A1556 0 SHEET 2 AA3 4 TRP A1562 ALA A1566 -1 O ARG A1565 N GLU A1553 SHEET 3 AA3 4 GLU A1661 PHE A1664 -1 O LEU A1662 N LEU A1564 SHEET 4 AA3 4 ASN A1628 HIS A1629 1 N ASN A1628 O PHE A1664 SHEET 1 AA4 3 PHE A1575 GLU A1578 0 SHEET 2 AA4 3 GLN A1645 THR A1652 -1 O PHE A1650 N VAL A1576 SHEET 3 AA4 3 CYS A1635 VAL A1642 -1 N GLU A1636 O PHE A1651 SHEET 1 AA5 2 ALA A1675 LYS A1677 0 SHEET 2 AA5 2 TYR A1688 GLY A1690 -1 O LEU A1689 N GLN A1676 SSBOND 1 CYS A 1449 CYS A 1463 1555 1555 2.08 LINK SG CYS A1499 ZN ZN A1801 1555 1555 2.22 LINK SG CYS A1501 ZN ZN A1801 1555 1555 2.39 LINK SG CYS A1516 ZN ZN A1801 1555 1555 2.47 LINK SG CYS A1516 ZN ZN A1802 1555 1555 2.39 LINK SG CYS A1520 ZN ZN A1801 1555 1555 2.36 LINK SG CYS A1529 ZN ZN A1802 1555 1555 2.32 LINK SG CYS A1533 ZN ZN A1802 1555 1555 2.36 LINK SG CYS A1539 ZN ZN A1802 1555 1555 2.24 LINK SG CYS A1631 ZN ZN A1803 1555 1555 2.35 LINK SG CYS A1678 ZN ZN A1803 1555 1555 2.34 LINK SG CYS A1680 ZN ZN A1803 1555 1555 2.35 LINK SG CYS A1685 ZN ZN A1803 1555 1555 2.34 LINK ZN ZN A1802 S SCN A1804 1555 1555 2.54 SITE 1 AC1 5 CYS A1499 CYS A1501 CYS A1516 CYS A1520 SITE 2 AC1 5 SCN A1804 SITE 1 AC2 5 CYS A1516 CYS A1529 CYS A1533 CYS A1539 SITE 2 AC2 5 SCN A1804 SITE 1 AC3 4 CYS A1631 CYS A1678 CYS A1680 CYS A1685 SITE 1 AC4 11 MET A1497 GLN A1498 CYS A1499 CYS A1516 SITE 2 AC4 11 ASN A1522 CYS A1529 CYS A1533 PRO A1534 SITE 3 AC4 11 ZN A1801 ZN A1802 HOH A1904 SITE 1 AC5 26 GLY A1434 LYS A1560 GLY A1561 TRP A1562 SITE 2 AC5 26 TYR A1579 ILE A1602 HIS A1603 TYR A1604 SITE 3 AC5 26 TYR A1605 SER A1624 ARG A1625 PHE A1626 SITE 4 AC5 26 MET A1627 ASN A1628 HIS A1629 TYR A1666 SITE 5 AC5 26 GLN A1669 GLN A1676 LYS A1677 CYS A1678 SITE 6 AC5 26 PHE A1679 CYS A1680 HOH A1961 HOH A1981 SITE 7 AC5 26 HOH A1995 HOH A2053 CRYST1 58.983 61.504 77.308 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016954 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016259 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012935 0.00000