HEADER PROTEIN/RNA 06-SEP-16 5LTA TITLE CRYSTAL STRUCTURE OF THE PRP43-ADP-BEF3-U7-RNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE PRP43; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.4.13; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE PROTEIN WAS EXPRESSED WITH 2 ADDITIONAL N-TERMINAL COMPND 7 AMINO ACIDS (MA) AND A C-TERMINAL STREP-TAG (WSHPQFEK); COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*U)-3'); COMPND 10 CHAIN: E; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM SOURCE 3 1495; SOURCE 4 ORGANISM_TAXID: 759272; SOURCE 5 GENE: CTHT_0005780; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PETM-13; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS RNA HELICASE, DEAH-BOX PROTEIN, DHX15, PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.J.TAUCHERT,R.FICNER REVDAT 3 17-JAN-24 5LTA 1 REMARK REVDAT 2 06-SEP-17 5LTA 1 REMARK REVDAT 1 25-JAN-17 5LTA 0 JRNL AUTH M.J.TAUCHERT,J.B.FOURMANN,R.LUHRMANN,R.FICNER JRNL TITL STRUCTURAL INSIGHTS INTO THE MECHANISM OF THE DEAH-BOX RNA JRNL TITL 2 HELICASE PRP43. JRNL REF ELIFE V. 6 2017 JRNL REFN ESSN 2050-084X JRNL PMID 28092261 JRNL DOI 10.7554/ELIFE.21510 REMARK 2 REMARK 2 RESOLUTION. 2.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 36884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5660 - 6.3129 0.99 2748 158 0.1654 0.1864 REMARK 3 2 6.3129 - 5.0124 1.00 2589 148 0.1845 0.1926 REMARK 3 3 5.0124 - 4.3793 1.00 2524 144 0.1511 0.1884 REMARK 3 4 4.3793 - 3.9791 1.00 2509 142 0.1616 0.1990 REMARK 3 5 3.9791 - 3.6940 1.00 2482 143 0.1786 0.2142 REMARK 3 6 3.6940 - 3.4763 1.00 2479 140 0.2071 0.2372 REMARK 3 7 3.4763 - 3.3022 1.00 2473 139 0.2388 0.2907 REMARK 3 8 3.3022 - 3.1585 1.00 2461 139 0.2537 0.2980 REMARK 3 9 3.1585 - 3.0369 1.00 2453 141 0.2506 0.2936 REMARK 3 10 3.0369 - 2.9321 1.00 2438 139 0.2609 0.3520 REMARK 3 11 2.9321 - 2.8405 0.99 2444 140 0.2766 0.3336 REMARK 3 12 2.8405 - 2.7593 1.00 2432 140 0.3007 0.3235 REMARK 3 13 2.7593 - 2.6867 1.00 2435 139 0.2812 0.3245 REMARK 3 14 2.6867 - 2.6211 1.00 2426 139 0.3078 0.3060 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5982 REMARK 3 ANGLE : 0.799 8150 REMARK 3 CHIRALITY : 0.031 922 REMARK 3 PLANARITY : 0.003 1017 REMARK 3 DIHEDRAL : 13.773 2315 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LTA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001318. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.82656 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36887 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.620 REMARK 200 RESOLUTION RANGE LOW (A) : 48.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 5.140 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.34 REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5D0U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 % (W/V) PGA-LM, 13 % (W/V) PEG REMARK 280 8000 AND 100 MM NA CACODYLATE PH 6.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 118.89933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 237.79867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 178.34900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 297.24833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.44967 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 118.89933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 237.79867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 297.24833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 178.34900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 59.44967 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 59 REMARK 465 ALA A 60 REMARK 465 MET A 759 REMARK 465 LYS A 760 REMARK 465 ALA A 761 REMARK 465 SER A 762 REMARK 465 LYS A 763 REMARK 465 ALA A 764 REMARK 465 TRP A 765 REMARK 465 SER A 766 REMARK 465 HIS A 767 REMARK 465 PRO A 768 REMARK 465 GLN A 769 REMARK 465 PHE A 770 REMARK 465 GLU A 771 REMARK 465 LYS A 772 REMARK 465 U E 9 REMARK 465 U E 10 REMARK 465 U E 11 REMARK 465 U E 12 REMARK 465 U E 13 REMARK 465 U E 14 REMARK 465 U E 15 REMARK 465 U E 16 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 U E 8 C5' C4' O4' C3' O3' C2' O2' REMARK 470 U E 8 C1' N1 C2 O2 N3 C4 O4 REMARK 470 U E 8 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3B ADP A 801 F3 BEF A 803 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 140 -9.08 -141.43 REMARK 500 GLN A 141 79.16 60.18 REMARK 500 GLU A 173 -102.01 -112.79 REMARK 500 ASN A 183 76.30 -108.08 REMARK 500 ASP A 206 84.41 -151.91 REMARK 500 PHE A 262 56.08 -96.76 REMARK 500 SER A 387 -46.20 67.92 REMARK 500 LEU A 444 47.34 -80.93 REMARK 500 PRO A 526 48.71 -70.47 REMARK 500 CYS A 543 42.89 -159.56 REMARK 500 GLN A 664 63.41 -109.77 REMARK 500 LYS A 680 -65.90 62.64 REMARK 500 SER A 690 35.94 -84.79 REMARK 500 THR A 708 -145.11 -88.30 REMARK 500 THR A 715 70.92 52.91 REMARK 500 LYS A 739 66.40 37.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 126 OG1 REMARK 620 2 ADP A 801 O1B 78.4 REMARK 620 3 HOH A 906 O 81.7 90.1 REMARK 620 4 HOH A 909 O 79.3 95.0 158.9 REMARK 620 5 HOH A 915 O 81.8 160.1 89.7 78.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A 803 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 801 O3B REMARK 620 2 BEF A 803 F1 114.6 REMARK 620 3 BEF A 803 F2 122.1 112.5 REMARK 620 4 BEF A 803 F3 86.1 110.1 107.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CAC A 804 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5D0U RELATED DB: PDB REMARK 900 5D0U IS THE SAME MOLECULE BUT CRYSTALLIZED IN COMPLEX WITH ADP. DBREF 5LTA A 61 764 UNP G0RY84 G0RY84_CHATD 61 764 DBREF 5LTA E 1 16 PDB 5LTA 5LTA 1 16 SEQADV 5LTA MET A 59 UNP G0RY84 INITIATING METHIONINE SEQADV 5LTA ALA A 60 UNP G0RY84 EXPRESSION TAG SEQADV 5LTA TRP A 765 UNP G0RY84 EXPRESSION TAG SEQADV 5LTA SER A 766 UNP G0RY84 EXPRESSION TAG SEQADV 5LTA HIS A 767 UNP G0RY84 EXPRESSION TAG SEQADV 5LTA PRO A 768 UNP G0RY84 EXPRESSION TAG SEQADV 5LTA GLN A 769 UNP G0RY84 EXPRESSION TAG SEQADV 5LTA PHE A 770 UNP G0RY84 EXPRESSION TAG SEQADV 5LTA GLU A 771 UNP G0RY84 EXPRESSION TAG SEQADV 5LTA LYS A 772 UNP G0RY84 EXPRESSION TAG SEQRES 1 A 714 MET ALA THR THR ALA LYS GLN ALA GLU ALA VAL GLU ASP SEQRES 2 A 714 SER ASP ILE ASN PRO TRP THR GLY GLN ARG HIS SER GLU SEQRES 3 A 714 ARG TYR PHE LYS ILE LEU LYS ALA ARG ARG LYS LEU PRO SEQRES 4 A 714 VAL ASN LYS GLN ARG GLN GLU PHE LEU ASP LEU TYR HIS SEQRES 5 A 714 ASN ASN GLN ILE LEU VAL PHE VAL GLY GLU THR GLY SER SEQRES 6 A 714 GLY LYS THR THR GLN ILE PRO GLN TYR VAL LEU TYR ASP SEQRES 7 A 714 GLU LEU PRO HIS GLN THR GLY LYS LEU ILE ALA CYS THR SEQRES 8 A 714 GLN PRO ARG ARG VAL ALA ALA MET SER VAL ALA GLN ARG SEQRES 9 A 714 VAL ALA ASP GLU LEU ASP VAL LYS LEU GLY GLU GLU VAL SEQRES 10 A 714 GLY TYR SER ILE ARG PHE GLU ASN LYS THR SER SER LYS SEQRES 11 A 714 THR LEU LEU LYS TYR MET THR ASP GLY GLN LEU LEU ARG SEQRES 12 A 714 GLU ALA MET HIS ASP ARG ASP MET SER ARG TYR SER CYS SEQRES 13 A 714 ILE ILE LEU ASP GLU ALA HIS GLU ARG THR LEU ALA THR SEQRES 14 A 714 ASP ILE LEU MET ALA LEU LEU LYS GLN LEU SER GLU ARG SEQRES 15 A 714 ARG LYS ASP LEU LYS ILE ILE VAL MET SER ALA THR LEU SEQRES 16 A 714 ASP ALA GLN LYS PHE GLN SER TYR PHE PHE ASN ALA PRO SEQRES 17 A 714 LEU LEU ALA VAL PRO GLY ARG THR HIS PRO VAL GLU ILE SEQRES 18 A 714 PHE TYR THR PRO GLU ALA GLU ARG ASP TYR VAL GLU ALA SEQRES 19 A 714 ALA ILE ARG THR VAL LEU GLN ILE HIS ALA CYS GLU PRO SEQRES 20 A 714 GLU GLY ASP ILE LEU LEU PHE LEU THR GLY GLU GLU GLU SEQRES 21 A 714 ILE GLU ASP ALA CYS ARG ARG ILE SER LEU GLU VAL ASP SEQRES 22 A 714 GLU MET ILE ARG GLU SER ASP ALA GLY PRO MET SER VAL SEQRES 23 A 714 TYR PRO LEU TYR GLY THR LEU PRO PRO HIS GLN GLN GLN SEQRES 24 A 714 ARG ILE PHE GLU LYS ALA PRO GLN PRO PHE ARG PRO GLY SEQRES 25 A 714 GLY ARG PRO GLY ARG LYS CYS ILE VAL ALA THR ASN ILE SEQRES 26 A 714 ALA GLU THR SER LEU THR ILE ASP GLY ILE VAL TYR VAL SEQRES 27 A 714 VAL ASP PRO GLY PHE SER LYS GLN LYS ILE TYR ASN PRO SEQRES 28 A 714 ARG THR ARG VAL GLU SER LEU LEU VAL SER PRO ILE SER SEQRES 29 A 714 LYS ALA SER ALA GLN GLN ARG ALA GLY ARG ALA GLY ARG SEQRES 30 A 714 THR ARG PRO GLY LYS CYS PHE ARG LEU TYR THR GLU GLU SEQRES 31 A 714 ALA PHE LYS LYS GLU LEU ILE GLU GLN THR TYR PRO GLU SEQRES 32 A 714 ILE LEU ARG SER ASN LEU SER ASN THR VAL LEU GLU LEU SEQRES 33 A 714 LYS LYS LEU GLY VAL GLU ASP LEU VAL HIS PHE ASP LEU SEQRES 34 A 714 MET ASP PRO PRO ALA PRO GLU THR MET MET ARG ALA LEU SEQRES 35 A 714 GLU GLU LEU ASN TYR LEU ALA CYS LEU ASP ASP ASP GLY SEQRES 36 A 714 GLU LEU THR PRO LEU GLY ASN LEU ALA SER GLU PHE PRO SEQRES 37 A 714 LEU ASP PRO ALA LEU ALA VAL MET LEU ILE SER SER PRO SEQRES 38 A 714 GLU PHE TYR CYS SER ASN GLU ILE LEU SER ILE THR SER SEQRES 39 A 714 LEU LEU SER VAL PRO GLN ILE TRP VAL ARG PRO ALA ASN SEQRES 40 A 714 ALA ARG LYS ARG ALA ASP GLU MET LYS ALA GLN PHE ALA SEQRES 41 A 714 HIS PRO ASP GLY ASP HIS LEU THR LEU LEU ASN ALA TYR SEQRES 42 A 714 HIS ALA TYR LYS GLY ALA GLU ALA ARG GLY GLU ASP MET SEQRES 43 A 714 LYS LYS TRP CYS HIS GLU HIS PHE LEU SER TYR ARG HIS SEQRES 44 A 714 LEU SER SER ALA ASP ASN VAL ARG ALA GLN LEU LYS LYS SEQRES 45 A 714 ILE MET GLU THR HIS GLY ILE GLU LEU VAL SER THR PRO SEQRES 46 A 714 PHE HIS ASP LYS ASN TYR TYR THR ASN ILE ARG ARG ALA SEQRES 47 A 714 LEU LEU ALA GLY PHE PHE MET GLN VAL ALA MET ARG GLU SEQRES 48 A 714 SER SER ASN SER LYS VAL TYR LYS THR VAL LYS ASP GLU SEQRES 49 A 714 GLN LEU VAL LEU ILE HIS PRO SER THR THR VAL THR THR SEQRES 50 A 714 PRO TYR GLU TRP VAL VAL TYR ASN GLU PHE VAL LEU THR SEQRES 51 A 714 THR LYS GLN TYR VAL ARG THR VAL THR ASN ILE ARG PRO SEQRES 52 A 714 GLU TRP LEU LEU GLU ILE ALA PRO VAL TYR TYR ASP LEU SEQRES 53 A 714 SER THR PHE GLN LYS GLY GLU ILE LYS ASN ALA LEU THR SEQRES 54 A 714 ARG VAL ALA GLU LYS ILE ARG ARG GLN GLN ALA MET LYS SEQRES 55 A 714 ALA SER LYS ALA TRP SER HIS PRO GLN PHE GLU LYS SEQRES 1 E 16 U U U U U U U U U U U U U SEQRES 2 E 16 U U U HET ADP A 801 27 HET MG A 802 1 HET BEF A 803 4 HET CAC A 804 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG MG 2+ FORMUL 5 BEF BE F3 1- FORMUL 6 CAC C2 H6 AS O2 1- FORMUL 7 HOH *52(H2 O) HELIX 1 AA1 THR A 62 ASP A 71 1 10 HELIX 2 AA2 SER A 83 ARG A 94 1 12 HELIX 3 AA3 LEU A 96 GLN A 101 1 6 HELIX 4 AA4 GLN A 101 ASN A 112 1 12 HELIX 5 AA5 GLY A 124 GLU A 137 1 14 HELIX 6 AA6 ARG A 152 LEU A 167 1 16 HELIX 7 AA7 ASP A 196 MET A 204 1 9 HELIX 8 AA8 ALA A 220 ARG A 223 5 4 HELIX 9 AA9 THR A 224 SER A 238 1 15 HELIX 10 AB1 ASP A 254 PHE A 262 1 9 HELIX 11 AB2 ASP A 288 GLU A 304 1 17 HELIX 12 AB3 GLY A 315 SER A 337 1 23 HELIX 13 AB4 PRO A 352 GLN A 357 1 6 HELIX 14 AB5 ARG A 358 GLU A 361 5 4 HELIX 15 AB6 SER A 422 GLY A 431 1 10 HELIX 16 AB7 THR A 446 LEU A 454 1 9 HELIX 17 AB8 PRO A 460 ARG A 464 5 5 HELIX 18 AB9 LEU A 467 LEU A 477 1 11 HELIX 19 AC1 ALA A 492 LEU A 506 1 15 HELIX 20 AC2 THR A 516 SER A 523 1 8 HELIX 21 AC3 ASP A 528 SER A 537 1 10 HELIX 22 AC4 SER A 538 TYR A 542 5 5 HELIX 23 AC5 CYS A 543 SER A 555 1 13 HELIX 24 AC6 ALA A 566 ALA A 575 1 10 HELIX 25 AC7 GLY A 582 GLY A 601 1 20 HELIX 26 AC8 ASP A 603 HIS A 611 1 9 HELIX 27 AC9 SER A 614 HIS A 635 1 22 HELIX 28 AD1 ASN A 648 PHE A 662 1 15 HELIX 29 AD2 ARG A 720 ALA A 728 1 9 HELIX 30 AD3 GLY A 740 GLN A 756 1 17 SHEET 1 AA1 8 GLU A 182 LYS A 184 0 SHEET 2 AA1 8 VAL A 175 ILE A 179 -1 N ILE A 179 O GLU A 182 SHEET 3 AA1 8 LEU A 191 THR A 195 1 O LEU A 191 N GLY A 176 SHEET 4 AA1 8 LEU A 145 GLN A 150 1 N GLN A 150 O MET A 194 SHEET 5 AA1 8 TYR A 212 ASP A 218 1 O ILE A 216 N ALA A 147 SHEET 6 AA1 8 LYS A 245 SER A 250 1 O MET A 249 N LEU A 217 SHEET 7 AA1 8 ILE A 114 GLY A 119 1 N PHE A 117 O VAL A 248 SHEET 8 AA1 8 LEU A 267 VAL A 270 1 O LEU A 268 N VAL A 116 SHEET 1 AA2 6 VAL A 277 TYR A 281 0 SHEET 2 AA2 6 GLY A 439 ARG A 443 1 O CYS A 441 N GLU A 278 SHEET 3 AA2 6 ILE A 393 ASP A 398 1 N VAL A 396 O PHE A 442 SHEET 4 AA2 6 ASP A 308 PHE A 312 1 N LEU A 310 O VAL A 397 SHEET 5 AA2 6 ARG A 375 ALA A 380 1 O ALA A 380 N LEU A 311 SHEET 6 AA2 6 MET A 342 LEU A 347 1 N TYR A 345 O VAL A 379 SHEET 1 AA3 2 PHE A 401 ASN A 408 0 SHEET 2 AA3 2 VAL A 413 PRO A 420 -1 O LEU A 417 N GLN A 404 SHEET 1 AA4 6 VAL A 665 ARG A 668 0 SHEET 2 AA4 6 VAL A 675 THR A 678 -1 O LYS A 677 N MET A 667 SHEET 3 AA4 6 LEU A 684 ILE A 687 -1 O VAL A 685 N TYR A 676 SHEET 4 AA4 6 GLN A 711 ASN A 718 1 O VAL A 713 N LEU A 686 SHEET 5 AA4 6 TRP A 699 LEU A 707 -1 N GLU A 704 O ARG A 714 SHEET 6 AA4 6 VAL A 665 ARG A 668 -1 N ALA A 666 O VAL A 700 LINK OG1 THR A 126 MG MG A 802 1555 1555 2.04 LINK O1B ADP A 801 MG MG A 802 1555 1555 2.09 LINK O3B ADP A 801 BE BEF A 803 1555 1555 1.58 LINK MG MG A 802 O HOH A 906 1555 1555 2.07 LINK MG MG A 802 O HOH A 909 1555 1555 2.07 LINK MG MG A 802 O HOH A 915 1555 1555 2.08 SITE 1 AC1 17 GLU A 120 GLY A 122 SER A 123 GLY A 124 SITE 2 AC1 17 LYS A 125 THR A 126 THR A 127 ARG A 162 SITE 3 AC1 17 THR A 389 ARG A 435 MG A 802 BEF A 803 SITE 4 AC1 17 HOH A 903 HOH A 904 HOH A 905 HOH A 906 SITE 5 AC1 17 HOH A 909 SITE 1 AC2 6 THR A 126 ADP A 801 BEF A 803 HOH A 906 SITE 2 AC2 6 HOH A 909 HOH A 915 SITE 1 AC3 11 THR A 121 LYS A 125 GLU A 219 ALA A 251 SITE 2 AC3 11 ARG A 432 ARG A 435 ADP A 801 MG A 802 SITE 3 AC3 11 HOH A 902 HOH A 909 HOH A 915 SITE 1 AC4 2 GLY A 400 PRO A 420 CRYST1 106.392 106.392 356.698 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009399 0.005427 0.000000 0.00000 SCALE2 0.000000 0.010853 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002803 0.00000