HEADER TRANSFERASE 06-SEP-16 5LTF TITLE CRYSTAL STRUCTURE OF LYMPHOCYTIC CHORIOMENINGITIS MAMMARENAVIRUS TITLE 2 ENDONUCLEASE COMPLEXED WITH CATALYTIC IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE L; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: PROTEIN L; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LYMPHOCYTIC CHORIOMENINGITIS MAMMARENAVIRUS; SOURCE 3 ORGANISM_TAXID: 11623; SOURCE 4 GENE: L, KUE_IGS320002; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENDONUCLEASE, LCMV ARENAVIRUS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SAEZ-AYALA,E.L.YEKWA,B.CANARD,F.FERRON REVDAT 4 17-JAN-24 5LTF 1 LINK REVDAT 3 30-MAY-18 5LTF 1 JRNL REVDAT 2 18-APR-18 5LTF 1 JRNL REVDAT 1 13-SEP-17 5LTF 0 JRNL AUTH M.SAEZ-AYALA,E.L.YEKWA,M.CARCELLI,B.CANARD,K.ALVAREZ, JRNL AUTH 2 F.FERRON JRNL TITL CRYSTAL STRUCTURES OFLYMPHOCYTIC CHORIOMENINGITIS JRNL TITL 2 VIRUSENDONUCLEASE DOMAIN COMPLEXED WITH DIKETO-ACID LIGANDS. JRNL REF IUCRJ V. 5 223 2018 JRNL REFN ESSN 2052-2525 JRNL PMID 29765612 JRNL DOI 10.1107/S2052252518001021 REMARK 2 REMARK 2 RESOLUTION. 2.43 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.43 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 23000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.400 REMARK 3 FREE R VALUE TEST SET COUNT : 1932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 5.8529 0.97 1595 147 0.1462 0.1681 REMARK 3 2 5.8529 - 4.6468 0.98 1536 139 0.1588 0.2106 REMARK 3 3 4.6468 - 4.0598 0.98 1556 139 0.1562 0.1897 REMARK 3 4 4.0598 - 3.6887 0.98 1544 144 0.1637 0.2144 REMARK 3 5 3.6887 - 3.4244 0.98 1535 140 0.2005 0.2630 REMARK 3 6 3.4244 - 3.2226 0.99 1565 145 0.2022 0.2893 REMARK 3 7 3.2226 - 3.0612 0.97 1492 139 0.2161 0.2833 REMARK 3 8 3.0612 - 2.9280 0.98 1550 142 0.2317 0.2691 REMARK 3 9 2.9280 - 2.8153 0.98 1514 135 0.2476 0.3398 REMARK 3 10 2.8153 - 2.7181 0.97 1500 144 0.2333 0.2913 REMARK 3 11 2.7181 - 2.6331 0.96 1491 135 0.2486 0.3341 REMARK 3 12 2.6331 - 2.5579 0.93 1452 132 0.2655 0.3208 REMARK 3 13 2.5579 - 2.4905 0.92 1451 135 0.2603 0.3313 REMARK 3 14 2.4905 - 2.4300 0.85 1287 116 0.2823 0.3572 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3134 REMARK 3 ANGLE : 1.082 4235 REMARK 3 CHIRALITY : 0.056 484 REMARK 3 PLANARITY : 0.007 550 REMARK 3 DIHEDRAL : 17.665 1922 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -39.0485 -2.5774 -3.0292 REMARK 3 T TENSOR REMARK 3 T11: 0.4684 T22: 0.4981 REMARK 3 T33: 0.4676 T12: 0.0053 REMARK 3 T13: -0.0171 T23: 0.0626 REMARK 3 L TENSOR REMARK 3 L11: 0.1902 L22: 1.0360 REMARK 3 L33: 0.5900 L12: 0.0329 REMARK 3 L13: -0.0270 L23: -0.4687 REMARK 3 S TENSOR REMARK 3 S11: 0.0446 S12: 0.0942 S13: 0.0491 REMARK 3 S21: -0.0034 S22: -0.0559 S23: -0.0088 REMARK 3 S31: -0.0050 S32: 0.0117 S33: 0.0185 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LTF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001325. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67793 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.430 REMARK 200 RESOLUTION RANGE LOW (A) : 48.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.04644 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.6100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.43 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.52 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3JSB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE 0,1M PH 6,2, REMARK 280 ISOPROPANOL 3,5%, MGCL2 1MM, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.05300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 13.52650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.57950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -7 REMARK 465 LYS B -6 REMARK 465 HIS B -5 REMARK 465 LYS B 195 REMARK 465 ARG B 196 REMARK 465 MET A -7 REMARK 465 LYS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 SER A 188 REMARK 465 LEU A 189 REMARK 465 LYS A 190 REMARK 465 THR A 191 REMARK 465 THR A 192 REMARK 465 ILE A 193 REMARK 465 ASP A 194 REMARK 465 LYS A 195 REMARK 465 ARG A 196 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 172 CG CD OE1 NE2 REMARK 470 ASP A 173 CG OD1 OD2 REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 GLU A 179 CG CD OE1 OE2 REMARK 470 SER A 180 OG REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 TYR A 182 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 183 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 184 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 185 CG CD1 CD2 REMARK 470 CYS A 186 SG REMARK 470 GLU A 187 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 1 O HOH A 301 1.97 REMARK 500 OE2 GLU A 101 O HOH A 302 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 33 C - N - CA ANGL. DEV. = -15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B -3 -144.34 -108.99 REMARK 500 HIS B -2 71.08 -151.74 REMARK 500 HIS B 0 -44.49 133.23 REMARK 500 LYS B 91 127.52 -172.97 REMARK 500 GLU B 168 28.84 -79.02 REMARK 500 TYR B 169 -54.43 -134.74 REMARK 500 SER B 180 -73.44 -66.87 REMARK 500 GLU B 181 -49.09 138.28 REMARK 500 ASP A 94 -117.11 50.29 REMARK 500 SER A 170 83.99 -61.24 REMARK 500 ASN A 171 -74.89 -148.29 REMARK 500 ASP A 173 -82.52 53.04 REMARK 500 GLU A 174 -65.39 59.54 REMARK 500 LYS A 175 -7.25 -59.10 REMARK 500 VAL A 176 36.03 -96.72 REMARK 500 PHE A 177 7.32 -168.69 REMARK 500 GLU A 178 -83.11 -48.96 REMARK 500 SER A 180 4.18 -62.63 REMARK 500 GLU A 181 -45.09 -167.07 REMARK 500 TYR A 182 -73.03 -61.41 REMARK 500 PHE A 183 71.25 -67.12 REMARK 500 ARG A 184 30.56 -177.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE B 93 ASP B 94 -33.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 88 OD2 REMARK 620 2 CYS A 102 O 90.0 REMARK 620 3 HOH A 302 O 101.6 157.9 REMARK 620 4 HOH A 332 O 84.9 75.7 123.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 88 OD1 REMARK 620 2 HOH A 302 O 107.1 REMARK 620 3 HOH A 303 O 63.9 170.9 REMARK 620 4 HOH A 314 O 70.9 50.9 122.2 REMARK 620 5 HOH A 332 O 72.0 93.7 84.2 114.3 REMARK 620 6 HOH A 334 O 65.1 106.8 69.5 59.7 136.1 REMARK 620 7 HOH A 349 O 112.3 117.5 68.6 167.3 57.6 133.1 REMARK 620 8 HOH A 377 O 160.2 59.3 129.5 104.7 93.5 130.4 67.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5T2T RELATED DB: PDB REMARK 900 LCMV ENDONUCLEASE WITH COMPOUND L742001 DBREF1 5LTF B 1 196 UNP A0A059U381_9VIRU DBREF2 5LTF B A0A059U381 2 197 DBREF1 5LTF A 1 196 UNP A0A059U381_9VIRU DBREF2 5LTF A A0A059U381 2 197 SEQADV 5LTF MET B -7 UNP A0A059U38 INITIATING METHIONINE SEQADV 5LTF LYS B -6 UNP A0A059U38 EXPRESSION TAG SEQADV 5LTF HIS B -5 UNP A0A059U38 EXPRESSION TAG SEQADV 5LTF HIS B -4 UNP A0A059U38 EXPRESSION TAG SEQADV 5LTF HIS B -3 UNP A0A059U38 EXPRESSION TAG SEQADV 5LTF HIS B -2 UNP A0A059U38 EXPRESSION TAG SEQADV 5LTF HIS B -1 UNP A0A059U38 EXPRESSION TAG SEQADV 5LTF HIS B 0 UNP A0A059U38 EXPRESSION TAG SEQADV 5LTF ASP B 173 UNP A0A059U38 ASN 174 ENGINEERED MUTATION SEQADV 5LTF MET A -7 UNP A0A059U38 INITIATING METHIONINE SEQADV 5LTF LYS A -6 UNP A0A059U38 EXPRESSION TAG SEQADV 5LTF HIS A -5 UNP A0A059U38 EXPRESSION TAG SEQADV 5LTF HIS A -4 UNP A0A059U38 EXPRESSION TAG SEQADV 5LTF HIS A -3 UNP A0A059U38 EXPRESSION TAG SEQADV 5LTF HIS A -2 UNP A0A059U38 EXPRESSION TAG SEQADV 5LTF HIS A -1 UNP A0A059U38 EXPRESSION TAG SEQADV 5LTF HIS A 0 UNP A0A059U38 EXPRESSION TAG SEQADV 5LTF ASP A 173 UNP A0A059U38 ASN 174 ENGINEERED MUTATION SEQRES 1 B 204 MET LYS HIS HIS HIS HIS HIS HIS ASP GLU ILE ILE SER SEQRES 2 B 204 GLU LEU ARG GLU LEU CYS LEU ASN TYR ILE GLU GLN ASP SEQRES 3 B 204 GLU ARG LEU SER ARG GLN LYS LEU ASN PHE LEU GLY GLN SEQRES 4 B 204 ARG GLU PRO ARG MET VAL LEU ILE GLU GLY LEU LYS LEU SEQRES 5 B 204 LEU SER ARG CYS ILE GLU ILE ASP SER ALA ASP LYS SER SEQRES 6 B 204 GLY CYS THR HIS ASN HIS ASP ASP LYS SER VAL GLU THR SEQRES 7 B 204 ILE LEU VAL GLU SER GLY ILE VAL CYS PRO GLY LEU PRO SEQRES 8 B 204 LEU ILE ILE PRO ASP GLY TYR LYS LEU ILE ASP ASN SER SEQRES 9 B 204 LEU ILE LEU LEU GLU CYS PHE VAL ARG SER THR PRO ALA SEQRES 10 B 204 SER PHE GLU LYS LYS PHE ILE GLU ASP THR ASN LYS LEU SEQRES 11 B 204 ALA CYS ILE ARG GLU ASP LEU ALA VAL ALA GLY VAL THR SEQRES 12 B 204 LEU VAL PRO ILE VAL ASP GLY ARG CYS ASP TYR ASP ASN SEQRES 13 B 204 SER PHE MET PRO GLU TRP ALA ASN PHE LYS PHE ARG ASP SEQRES 14 B 204 LEU LEU PHE LYS LEU LEU GLU TYR SER ASN GLN ASP GLU SEQRES 15 B 204 LYS VAL PHE GLU GLU SER GLU TYR PHE ARG LEU CYS GLU SEQRES 16 B 204 SER LEU LYS THR THR ILE ASP LYS ARG SEQRES 1 A 204 MET LYS HIS HIS HIS HIS HIS HIS ASP GLU ILE ILE SER SEQRES 2 A 204 GLU LEU ARG GLU LEU CYS LEU ASN TYR ILE GLU GLN ASP SEQRES 3 A 204 GLU ARG LEU SER ARG GLN LYS LEU ASN PHE LEU GLY GLN SEQRES 4 A 204 ARG GLU PRO ARG MET VAL LEU ILE GLU GLY LEU LYS LEU SEQRES 5 A 204 LEU SER ARG CYS ILE GLU ILE ASP SER ALA ASP LYS SER SEQRES 6 A 204 GLY CYS THR HIS ASN HIS ASP ASP LYS SER VAL GLU THR SEQRES 7 A 204 ILE LEU VAL GLU SER GLY ILE VAL CYS PRO GLY LEU PRO SEQRES 8 A 204 LEU ILE ILE PRO ASP GLY TYR LYS LEU ILE ASP ASN SER SEQRES 9 A 204 LEU ILE LEU LEU GLU CYS PHE VAL ARG SER THR PRO ALA SEQRES 10 A 204 SER PHE GLU LYS LYS PHE ILE GLU ASP THR ASN LYS LEU SEQRES 11 A 204 ALA CYS ILE ARG GLU ASP LEU ALA VAL ALA GLY VAL THR SEQRES 12 A 204 LEU VAL PRO ILE VAL ASP GLY ARG CYS ASP TYR ASP ASN SEQRES 13 A 204 SER PHE MET PRO GLU TRP ALA ASN PHE LYS PHE ARG ASP SEQRES 14 A 204 LEU LEU PHE LYS LEU LEU GLU TYR SER ASN GLN ASP GLU SEQRES 15 A 204 LYS VAL PHE GLU GLU SER GLU TYR PHE ARG LEU CYS GLU SEQRES 16 A 204 SER LEU LYS THR THR ILE ASP LYS ARG HET MG A 201 1 HET MG A 202 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *158(H2 O) HELIX 1 AA1 HIS B 0 ILE B 15 1 16 HELIX 2 AA2 ASP B 18 ARG B 20 5 3 HELIX 3 AA3 LEU B 21 GLY B 30 1 10 HELIX 4 AA4 GLU B 33 GLY B 58 1 26 HELIX 5 AA5 SER B 67 GLU B 74 1 8 HELIX 6 AA6 THR B 107 CYS B 124 1 18 HELIX 7 AA7 ILE B 125 VAL B 131 1 7 HELIX 8 AA8 PRO B 152 GLU B 178 1 27 HELIX 9 AA9 GLU B 181 ASP B 194 1 14 HELIX 10 AB1 ASP A 1 TYR A 14 1 14 HELIX 11 AB2 ASP A 18 GLY A 30 1 13 HELIX 12 AB3 GLU A 33 SER A 57 1 25 HELIX 13 AB4 SER A 67 SER A 75 1 9 HELIX 14 AB5 THR A 107 CYS A 124 1 18 HELIX 15 AB6 ILE A 125 ALA A 132 1 8 HELIX 16 AB7 PRO A 152 SER A 170 1 19 SHEET 1 AA1 4 THR B 60 HIS B 61 0 SHEET 2 AA1 4 GLY B 89 ILE B 93 -1 O TYR B 90 N THR B 60 SHEET 3 AA1 4 SER B 96 VAL B 104 -1 O SER B 96 N ILE B 93 SHEET 4 AA1 4 THR B 135 ARG B 143 1 O THR B 135 N LEU B 97 SHEET 1 AA2 4 THR A 60 HIS A 61 0 SHEET 2 AA2 4 GLY A 89 ILE A 93 -1 O TYR A 90 N THR A 60 SHEET 3 AA2 4 SER A 96 VAL A 104 -1 O SER A 96 N ILE A 93 SHEET 4 AA2 4 THR A 135 ARG A 143 1 O ILE A 139 N LEU A 99 LINK OD2 ASP A 88 MG MG A 201 1555 1555 2.15 LINK OD1 ASP A 88 MG MG A 202 1555 1555 2.35 LINK O CYS A 102 MG MG A 201 1555 1555 2.24 LINK MG MG A 201 O HOH A 302 1555 1555 2.62 LINK MG MG A 201 O HOH A 332 1555 1555 2.12 LINK MG MG A 202 O HOH A 302 1555 1555 2.89 LINK MG MG A 202 O HOH A 303 1555 1555 1.93 LINK MG MG A 202 O HOH A 314 1555 1555 2.43 LINK MG MG A 202 O HOH A 332 1555 1555 2.85 LINK MG MG A 202 O HOH A 334 1555 1555 2.66 LINK MG MG A 202 O HOH A 349 1555 1555 2.62 LINK MG MG A 202 O HOH A 377 1555 1555 2.48 CISPEP 1 HIS B -4 HIS B -3 0 3.86 CISPEP 2 ALA B 132 GLY B 133 0 -9.22 SITE 1 AC1 7 ASP A 88 GLU A 101 CYS A 102 MG A 202 SITE 2 AC1 7 HOH A 302 HOH A 332 HOH A 365 SITE 1 AC2 10 GLU A 50 ASP A 88 MG A 201 HOH A 302 SITE 2 AC2 10 HOH A 303 HOH A 314 HOH A 332 HOH A 334 SITE 3 AC2 10 HOH A 349 HOH A 377 CRYST1 108.361 108.361 54.106 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009228 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018482 0.00000