HEADER LYASE 07-SEP-16 5LTM TITLE CRYSTAL STRUCTURE OF PHENYLALANINE AMMONIA-LYASE FROM ANABAENA TITLE 2 VARIABILIS (Y78F-C503S-C565S) BOUND TO CINNAMATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHENYLALANINE AMMONIA LYASE; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANABAENA; SOURCE 3 ORGANISM_TAXID: 1163; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS CINNAMATE, AVPAL, PHENYLALANINE AMMONIA-LYASE. Y78F MUTANT, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.DUNSTAN,D.LEYS REVDAT 5 15-NOV-23 5LTM 1 LINK ATOM REVDAT 4 16-OCT-19 5LTM 1 REMARK REVDAT 3 24-OCT-18 5LTM 1 SOURCE REVDAT 2 01-NOV-17 5LTM 1 JRNL REVDAT 1 20-SEP-17 5LTM 0 JRNL AUTH N.J.WEISE,S.T.AHMED,F.PARMEGGIANI,J.L.GALMAN,M.S.DUNSTAN, JRNL AUTH 2 S.J.CHARNOCK,D.LEYS,N.J.TURNER JRNL TITL ZYMOPHORE IDENTIFICATION ENABLES THE DISCOVERY OF NOVEL JRNL TITL 2 PHENYLALANINE AMMONIA LYASE ENZYMES. JRNL REF SCI REP V. 7 13691 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 29057979 JRNL DOI 10.1038/S41598-017-13990-0 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 43475 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2180 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.8317 - 6.0642 1.00 2854 153 0.1488 0.1710 REMARK 3 2 6.0642 - 4.8199 1.00 2676 149 0.1549 0.1631 REMARK 3 3 4.8199 - 4.2126 1.00 2655 135 0.1257 0.1789 REMARK 3 4 4.2126 - 3.8283 1.00 2616 127 0.1341 0.1783 REMARK 3 5 3.8283 - 3.5543 1.00 2566 134 0.1474 0.2033 REMARK 3 6 3.5543 - 3.3451 1.00 2596 138 0.1605 0.2135 REMARK 3 7 3.3451 - 3.1777 1.00 2576 139 0.1727 0.2029 REMARK 3 8 3.1777 - 3.0396 1.00 2561 141 0.1683 0.2440 REMARK 3 9 3.0396 - 2.9227 1.00 2539 132 0.1678 0.2332 REMARK 3 10 2.9227 - 2.8219 1.00 2548 129 0.1697 0.2102 REMARK 3 11 2.8219 - 2.7337 1.00 2575 118 0.1713 0.2394 REMARK 3 12 2.7337 - 2.6556 1.00 2532 130 0.1638 0.2341 REMARK 3 13 2.6556 - 2.5857 1.00 2530 144 0.1666 0.2537 REMARK 3 14 2.5857 - 2.5227 1.00 2506 143 0.1703 0.2679 REMARK 3 15 2.5227 - 2.4654 1.00 2563 121 0.1877 0.2464 REMARK 3 16 2.4654 - 2.4129 0.96 2402 147 0.1952 0.2579 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 8448 REMARK 3 ANGLE : 1.312 11472 REMARK 3 CHIRALITY : 0.044 1304 REMARK 3 PLANARITY : 0.006 1509 REMARK 3 DIHEDRAL : 15.196 3088 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LTM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001317. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-15 REMARK 200 TEMPERATURE (KELVIN) : 180 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 552678 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.410 REMARK 200 RESOLUTION RANGE LOW (A) : 29.829 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12-20% PEG1500 100MM SPG (SUCCINIC REMARK 280 ACID DIHYDROGEN PHOSPHATE GLYCINE (PH7.0), VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 177.24600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 265.86900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.62300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 177.24600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.62300 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 265.86900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -156.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -78.07700 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 114 O HOH A 701 0.90 REMARK 500 O HOH A 707 O HOH A 789 1.81 REMARK 500 OE1 GLU B 509 O HOH B 701 1.87 REMARK 500 O HOH B 847 O HOH B 872 1.88 REMARK 500 O ASN A 114 N GLU A 161 1.92 REMARK 500 O HOH A 813 O HOH A 880 1.92 REMARK 500 O HOH A 819 O HOH A 878 1.99 REMARK 500 NH2 ARG B 128 O ASN B 223 2.04 REMARK 500 OD2 ASP A 306 O HOH A 702 2.06 REMARK 500 NE2 GLN A 536 O HOH A 703 2.10 REMARK 500 CG ASN A 114 O HOH A 701 2.10 REMARK 500 N GLY A 29 O HOH A 704 2.12 REMARK 500 OD2 ASP B 65 O HOH B 702 2.13 REMARK 500 O HOH A 797 O HOH A 894 2.14 REMARK 500 O GLY A 45 O HOH A 705 2.15 REMARK 500 OD1 ASP A 191 O HOH A 706 2.16 REMARK 500 NH1 ARG A 410 O HOH A 707 2.16 REMARK 500 O HOH B 814 O HOH B 843 2.16 REMARK 500 ND2 ASN A 290 O HOH A 708 2.16 REMARK 500 N TYR B 304 O HOH B 703 2.18 REMARK 500 OE1 GLU A 308 O HOH A 709 2.19 REMARK 500 NH2 ARG B 317 O1 HCI B 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 845 O HOH A 861 5455 1.90 REMARK 500 O HOH B 810 O HOH B 853 7465 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 303 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 216 -21.65 76.03 REMARK 500 TYR B 304 57.60 -114.29 REMARK 500 ASN B 347 142.42 -172.10 REMARK 500 GLU B 448 73.01 45.58 REMARK 500 GLN B 457 28.11 49.18 REMARK 500 ILE B 562 49.74 -79.82 REMARK 500 ILE A 28 -70.96 -71.14 REMARK 500 LEU A 108 -82.46 -91.45 REMARK 500 LYS A 109 159.78 -39.34 REMARK 500 ASN A 114 173.23 12.75 REMARK 500 ASN A 193 56.18 30.02 REMARK 500 LYS A 216 -28.05 79.06 REMARK 500 ASP A 303 158.23 171.46 REMARK 500 TYR A 304 125.24 -29.80 REMARK 500 ASP A 306 -120.68 -149.54 REMARK 500 HIS A 307 -74.63 -68.62 REMARK 500 GLU A 308 -122.81 -167.03 REMARK 500 ASN A 347 140.20 -175.67 REMARK 500 GLU A 448 73.10 48.32 REMARK 500 TRP A 531 -73.03 -103.34 REMARK 500 ASN A 534 -34.36 -39.64 REMARK 500 ILE A 562 46.03 -80.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 114 LYS A 115 -144.75 REMARK 500 HIS A 302 ASP A 303 129.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HCI B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HCI A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide GLY A 166 and MDO A REMARK 800 168 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide MDO A 168 and ASP A REMARK 800 170 DBREF 5LTM B 25 563 PDB 5LTM 5LTM 25 563 DBREF 5LTM A 25 563 PDB 5LTM 5LTM 25 563 SEQRES 1 B 537 ASN VAL ILE ILE GLY ASN GLN LYS LEU THR ILE ASN ASP SEQRES 2 B 537 VAL ALA ARG VAL ALA ARG ASN GLY THR LEU VAL SER LEU SEQRES 3 B 537 THR ASN ASN THR ASP ILE LEU GLN GLY ILE GLN ALA SER SEQRES 4 B 537 CYS ASP TYR ILE ASN ASN ALA VAL GLU SER GLY GLU PRO SEQRES 5 B 537 ILE PHE GLY VAL THR SER GLY PHE GLY GLY MET ALA ASN SEQRES 6 B 537 VAL ALA ILE SER ARG GLU GLN ALA SER GLU LEU GLN THR SEQRES 7 B 537 ASN LEU VAL TRP PHE LEU LYS THR GLY ALA GLY ASN LYS SEQRES 8 B 537 LEU PRO LEU ALA ASP VAL ARG ALA ALA MET LEU LEU ARG SEQRES 9 B 537 ALA ASN SER HIS MET ARG GLY ALA SER GLY ILE ARG LEU SEQRES 10 B 537 GLU LEU ILE LYS ARG MET GLU ILE PHE LEU ASN ALA GLY SEQRES 11 B 537 VAL THR PRO TYR VAL TYR GLU PHE GLY SER ILE GLY MDO SEQRES 12 B 537 ASP LEU VAL PRO LEU SER TYR ILE THR GLY SER LEU ILE SEQRES 13 B 537 GLY LEU ASP PRO SER PHE LYS VAL ASP PHE ASN GLY LYS SEQRES 14 B 537 GLU MET ASP ALA PRO THR ALA LEU ARG GLN LEU ASN LEU SEQRES 15 B 537 SER PRO LEU THR LEU LEU PRO LYS GLU GLY LEU ALA MET SEQRES 16 B 537 MET ASN GLY THR SER VAL MET THR GLY ILE ALA ALA ASN SEQRES 17 B 537 CYS VAL TYR ASP THR GLN ILE LEU THR ALA ILE ALA MET SEQRES 18 B 537 GLY VAL HIS ALA LEU ASP ILE GLN ALA LEU ASN GLY THR SEQRES 19 B 537 ASN GLN SER PHE HIS PRO PHE ILE HIS ASN SER LYS PRO SEQRES 20 B 537 HIS PRO GLY GLN LEU TRP ALA ALA ASP GLN MET ILE SER SEQRES 21 B 537 LEU LEU ALA ASN SER GLN LEU VAL ARG ASP GLU LEU ASP SEQRES 22 B 537 GLY LYS HIS ASP TYR ARG ASP HIS GLU LEU ILE GLN ASP SEQRES 23 B 537 ARG TYR SER LEU ARG CYS LEU PRO GLN TYR LEU GLY PRO SEQRES 24 B 537 ILE VAL ASP GLY ILE SER GLN ILE ALA LYS GLN ILE GLU SEQRES 25 B 537 ILE GLU ILE ASN SER VAL THR ASP ASN PRO LEU ILE ASP SEQRES 26 B 537 VAL ASP ASN GLN ALA SER TYR HIS GLY GLY ASN PHE LEU SEQRES 27 B 537 GLY GLN TYR VAL GLY MET GLY MET ASP HIS LEU ARG TYR SEQRES 28 B 537 TYR ILE GLY LEU LEU ALA LYS HIS LEU ASP VAL GLN ILE SEQRES 29 B 537 ALA LEU LEU ALA SER PRO GLU PHE SER ASN GLY LEU PRO SEQRES 30 B 537 PRO SER LEU LEU GLY ASN ARG GLU ARG LYS VAL ASN MET SEQRES 31 B 537 GLY LEU LYS GLY LEU GLN ILE CYS GLY ASN SER ILE MET SEQRES 32 B 537 PRO LEU LEU THR PHE TYR GLY ASN SER ILE ALA ASP ARG SEQRES 33 B 537 PHE PRO THR HIS ALA GLU GLN PHE ASN GLN ASN ILE ASN SEQRES 34 B 537 SER GLN GLY TYR THR SER ALA THR LEU ALA ARG ARG SER SEQRES 35 B 537 VAL ASP ILE PHE GLN ASN TYR VAL ALA ILE ALA LEU MET SEQRES 36 B 537 PHE GLY VAL GLN ALA VAL ASP LEU ARG THR TYR LYS LYS SEQRES 37 B 537 THR GLY HIS TYR ASP ALA ARG ALA SER LEU SER PRO ALA SEQRES 38 B 537 THR GLU ARG LEU TYR SER ALA VAL ARG HIS VAL VAL GLY SEQRES 39 B 537 GLN LYS PRO THR SER ASP ARG PRO TYR ILE TRP ASN ASP SEQRES 40 B 537 ASN GLU GLN GLY LEU ASP GLU HIS ILE ALA ARG ILE SER SEQRES 41 B 537 ALA ASP ILE ALA ALA GLY GLY VAL ILE VAL GLN ALA VAL SEQRES 42 B 537 GLN ASP ILE LEU SEQRES 1 A 537 ASN VAL ILE ILE GLY ASN GLN LYS LEU THR ILE ASN ASP SEQRES 2 A 537 VAL ALA ARG VAL ALA ARG ASN GLY THR LEU VAL SER LEU SEQRES 3 A 537 THR ASN ASN THR ASP ILE LEU GLN GLY ILE GLN ALA SER SEQRES 4 A 537 CYS ASP TYR ILE ASN ASN ALA VAL GLU SER GLY GLU PRO SEQRES 5 A 537 ILE PHE GLY VAL THR SER GLY PHE GLY GLY MET ALA ASN SEQRES 6 A 537 VAL ALA ILE SER ARG GLU GLN ALA SER GLU LEU GLN THR SEQRES 7 A 537 ASN LEU VAL TRP PHE LEU LYS THR GLY ALA GLY ASN LYS SEQRES 8 A 537 LEU PRO LEU ALA ASP VAL ARG ALA ALA MET LEU LEU ARG SEQRES 9 A 537 ALA ASN SER HIS MET ARG GLY ALA SER GLY ILE ARG LEU SEQRES 10 A 537 GLU LEU ILE LYS ARG MET GLU ILE PHE LEU ASN ALA GLY SEQRES 11 A 537 VAL THR PRO TYR VAL TYR GLU PHE GLY SER ILE GLY MDO SEQRES 12 A 537 ASP LEU VAL PRO LEU SER TYR ILE THR GLY SER LEU ILE SEQRES 13 A 537 GLY LEU ASP PRO SER PHE LYS VAL ASP PHE ASN GLY LYS SEQRES 14 A 537 GLU MET ASP ALA PRO THR ALA LEU ARG GLN LEU ASN LEU SEQRES 15 A 537 SER PRO LEU THR LEU LEU PRO LYS GLU GLY LEU ALA MET SEQRES 16 A 537 MET ASN GLY THR SER VAL MET THR GLY ILE ALA ALA ASN SEQRES 17 A 537 CYS VAL TYR ASP THR GLN ILE LEU THR ALA ILE ALA MET SEQRES 18 A 537 GLY VAL HIS ALA LEU ASP ILE GLN ALA LEU ASN GLY THR SEQRES 19 A 537 ASN GLN SER PHE HIS PRO PHE ILE HIS ASN SER LYS PRO SEQRES 20 A 537 HIS PRO GLY GLN LEU TRP ALA ALA ASP GLN MET ILE SER SEQRES 21 A 537 LEU LEU ALA ASN SER GLN LEU VAL ARG ASP GLU LEU ASP SEQRES 22 A 537 GLY LYS HIS ASP TYR ARG ASP HIS GLU LEU ILE GLN ASP SEQRES 23 A 537 ARG TYR SER LEU ARG CYS LEU PRO GLN TYR LEU GLY PRO SEQRES 24 A 537 ILE VAL ASP GLY ILE SER GLN ILE ALA LYS GLN ILE GLU SEQRES 25 A 537 ILE GLU ILE ASN SER VAL THR ASP ASN PRO LEU ILE ASP SEQRES 26 A 537 VAL ASP ASN GLN ALA SER TYR HIS GLY GLY ASN PHE LEU SEQRES 27 A 537 GLY GLN TYR VAL GLY MET GLY MET ASP HIS LEU ARG TYR SEQRES 28 A 537 TYR ILE GLY LEU LEU ALA LYS HIS LEU ASP VAL GLN ILE SEQRES 29 A 537 ALA LEU LEU ALA SER PRO GLU PHE SER ASN GLY LEU PRO SEQRES 30 A 537 PRO SER LEU LEU GLY ASN ARG GLU ARG LYS VAL ASN MET SEQRES 31 A 537 GLY LEU LYS GLY LEU GLN ILE CYS GLY ASN SER ILE MET SEQRES 32 A 537 PRO LEU LEU THR PHE TYR GLY ASN SER ILE ALA ASP ARG SEQRES 33 A 537 PHE PRO THR HIS ALA GLU GLN PHE ASN GLN ASN ILE ASN SEQRES 34 A 537 SER GLN GLY TYR THR SER ALA THR LEU ALA ARG ARG SER SEQRES 35 A 537 VAL ASP ILE PHE GLN ASN TYR VAL ALA ILE ALA LEU MET SEQRES 36 A 537 PHE GLY VAL GLN ALA VAL ASP LEU ARG THR TYR LYS LYS SEQRES 37 A 537 THR GLY HIS TYR ASP ALA ARG ALA SER LEU SER PRO ALA SEQRES 38 A 537 THR GLU ARG LEU TYR SER ALA VAL ARG HIS VAL VAL GLY SEQRES 39 A 537 GLN LYS PRO THR SER ASP ARG PRO TYR ILE TRP ASN ASP SEQRES 40 A 537 ASN GLU GLN GLY LEU ASP GLU HIS ILE ALA ARG ILE SER SEQRES 41 A 537 ALA ASP ILE ALA ALA GLY GLY VAL ILE VAL GLN ALA VAL SEQRES 42 A 537 GLN ASP ILE LEU HET MDO B 168 13 HET MDO A 168 13 HET HCI B 601 11 HET HCI A 601 11 HETNAM MDO {2-[(1S)-1-AMINOETHYL]-4-METHYLIDENE-5-OXO-4,5-DIHYDRO- HETNAM 2 MDO 1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM HCI HYDROCINNAMIC ACID HETSYN MDO 4-METHYLIDENE-5-ONE; PEPTIDE DERIVED CHROMOPHORE HETSYN HCI 3PP; 3-PHENYLPROPIONIC ACID FORMUL 1 MDO 2(C8 H11 N3 O3) FORMUL 3 HCI 2(C9 H10 O2) FORMUL 5 HOH *395(H2 O) HELIX 1 AA1 THR B 34 GLY B 45 1 12 HELIX 2 AA2 ASN B 53 SER B 73 1 21 HELIX 3 AA3 PHE B 84 ALA B 88 5 5 HELIX 4 AA4 GLN B 96 LEU B 108 1 13 HELIX 5 AA5 PRO B 117 MET B 133 1 17 HELIX 6 AA6 ARG B 140 GLY B 154 1 15 HELIX 7 AA7 ASP B 170 ILE B 182 1 13 HELIX 8 AA8 ALA B 199 LEU B 206 1 8 HELIX 9 AA9 LYS B 216 ASN B 223 1 8 HELIX 10 AB1 THR B 225 LEU B 257 1 33 HELIX 11 AB2 ASN B 261 PHE B 264 5 4 HELIX 12 AB3 HIS B 265 SER B 271 1 7 HELIX 13 AB4 HIS B 274 ALA B 289 1 16 HELIX 14 AB5 ARG B 313 CYS B 318 1 6 HELIX 15 AB6 CYS B 318 ASN B 342 1 25 HELIX 16 AB7 VAL B 352 GLN B 355 5 4 HELIX 17 AB8 GLY B 365 SER B 395 1 31 HELIX 18 AB9 PRO B 403 LEU B 407 5 5 HELIX 19 AC1 LEU B 418 TYR B 435 1 18 HELIX 20 AC2 ILE B 439 PHE B 443 5 5 HELIX 21 AC3 GLN B 457 THR B 495 1 39 HELIX 22 AC4 SER B 505 GLY B 520 1 16 HELIX 23 AC5 ASN B 532 GLN B 536 5 5 HELIX 24 AC6 GLY B 537 ALA B 551 1 15 HELIX 25 AC7 GLY B 553 VAL B 559 1 7 HELIX 26 AC8 THR A 34 GLY A 45 1 12 HELIX 27 AC9 ASN A 53 SER A 73 1 21 HELIX 28 AD1 PHE A 84 ALA A 88 5 5 HELIX 29 AD2 GLN A 96 LYS A 109 1 14 HELIX 30 AD3 PRO A 117 MET A 133 1 17 HELIX 31 AD4 ARG A 140 GLY A 154 1 15 HELIX 32 AD5 ASP A 170 GLY A 183 1 14 HELIX 33 AD6 ALA A 199 LEU A 206 1 8 HELIX 34 AD7 LYS A 216 ASN A 223 1 8 HELIX 35 AD8 THR A 225 LEU A 257 1 33 HELIX 36 AD9 ASN A 261 PHE A 264 5 4 HELIX 37 AE1 HIS A 265 SER A 271 1 7 HELIX 38 AE2 HIS A 274 ALA A 289 1 16 HELIX 39 AE3 ARG A 313 CYS A 318 1 6 HELIX 40 AE4 CYS A 318 ASN A 342 1 25 HELIX 41 AE5 VAL A 352 GLN A 355 5 4 HELIX 42 AE6 GLY A 365 SER A 395 1 31 HELIX 43 AE7 PRO A 403 LEU A 407 5 5 HELIX 44 AE8 LEU A 418 GLY A 436 1 19 HELIX 45 AE9 ILE A 439 PHE A 443 5 5 HELIX 46 AF1 GLN A 457 THR A 495 1 39 HELIX 47 AF2 SER A 505 GLY A 520 1 16 HELIX 48 AF3 ASN A 532 GLN A 536 5 5 HELIX 49 AF4 GLY A 537 GLY A 552 1 16 HELIX 50 AF5 GLY A 553 VAL A 559 1 7 SHEET 1 AA1 2 VAL B 26 ILE B 27 0 SHEET 2 AA1 2 VAL B 48 SER B 49 1 O SER B 49 N VAL B 26 SHEET 1 AA2 2 ALA B 112 LYS B 115 0 SHEET 2 AA2 2 TYR B 160 PHE B 162 -1 O GLU B 161 N ASN B 114 SHEET 1 AA3 3 VAL B 155 PRO B 157 0 SHEET 2 AA3 3 LYS B 189 PHE B 192 -1 O ASP B 191 N THR B 156 SHEET 3 AA3 3 LYS B 195 ASP B 198 -1 O LYS B 195 N PHE B 192 SHEET 1 AA4 2 LEU B 349 ASP B 351 0 SHEET 2 AA4 2 ALA B 356 TYR B 358 -1 O ALA B 356 N ASP B 351 SHEET 1 AA5 2 VAL A 26 ILE A 27 0 SHEET 2 AA5 2 VAL A 48 SER A 49 1 O SER A 49 N VAL A 26 SHEET 1 AA6 2 GLY A 113 LYS A 115 0 SHEET 2 AA6 2 TYR A 160 PHE A 162 -1 O GLU A 161 N ASN A 114 SHEET 1 AA7 3 VAL A 155 PRO A 157 0 SHEET 2 AA7 3 LYS A 189 PHE A 192 -1 O ASP A 191 N THR A 156 SHEET 3 AA7 3 LYS A 195 ASP A 198 -1 O LYS A 195 N PHE A 192 SHEET 1 AA8 2 LEU A 349 ASP A 351 0 SHEET 2 AA8 2 ALA A 356 TYR A 358 -1 O ALA A 356 N ASP A 351 LINK C GLY B 166 N1 MDO B 168 1555 1555 1.33 LINK C3 MDO B 168 N ASP B 170 1555 1555 1.33 LINK C GLY A 166 N1 MDO A 168 1555 1555 1.33 LINK C3 MDO A 168 N ASP A 170 1555 1555 1.33 CISPEP 1 ASN B 347 PRO B 348 0 -4.00 CISPEP 2 ASN A 347 PRO A 348 0 -5.64 SITE 1 AC1 9 PHE A 84 GLY A 85 LEU A 104 LEU A 171 SITE 2 AC1 9 ASN A 451 HOH A 727 GLN B 311 TYR B 314 SITE 3 AC1 9 ARG B 317 SITE 1 AC2 8 GLN A 311 TYR A 314 ARG A 317 PHE B 84 SITE 2 AC2 8 LEU B 104 LEU B 171 ASN B 451 HOH B 711 SITE 1 AC3 12 SER A 164 ILE A 165 ASP A 170 LEU A 171 SITE 2 AC3 12 MET A 222 ASN A 223 GLY A 224 MET A 228 SITE 3 AC3 12 PHE A 363 GLY A 365 SER A 456 TYR B 314 SITE 1 AC4 16 SER A 164 ILE A 165 GLY A 166 LEU A 171 SITE 2 AC4 16 VAL A 172 PRO A 173 LEU A 174 MET A 222 SITE 3 AC4 16 ASN A 223 GLY A 224 THR A 225 VAL A 227 SITE 4 AC4 16 MET A 228 PHE A 363 TYR A 459 TYR B 314 CRYST1 78.077 78.077 354.492 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012808 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012808 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002821 0.00000