HEADER FLUORESCENT PROTEIN 07-SEP-16 5LTR TITLE STRUCTURE OF THE YELLOW-GREEN FLUORESCENT PROTEIN MNEONGREEN FROM TITLE 2 BRANCHIOSTOMA LANCEOLATUM AT THE NEAR PHYSIOLOGICAL PH 8.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MNEONGREEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: YELLOW-GREEN FLUORESCENT PROTEIN MNEONGREEN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BRANCHIOSTOMA LANCEOLATUM; SOURCE 3 ORGANISM_COMMON: COMMON LANCELET; SOURCE 4 ORGANISM_TAXID: 7740; SOURCE 5 VARIANT: MNEONGREEN; SOURCE 6 GENE: BLFP-Y3; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNCS KEYWDS FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.CLAVEL,G.GOTTHARD,A.ROYANT REVDAT 3 17-JAN-24 5LTR 1 REMARK REVDAT 2 21-DEC-16 5LTR 1 JRNL REVDAT 1 07-DEC-16 5LTR 0 JRNL AUTH D.CLAVEL,G.GOTTHARD,D.VON STETTEN,D.DE SANCTIS,H.PASQUIER, JRNL AUTH 2 G.G.LAMBERT,N.C.SHANER,A.ROYANT JRNL TITL STRUCTURAL ANALYSIS OF THE BRIGHT MONOMERIC YELLOW-GREEN JRNL TITL 2 FLUORESCENT PROTEIN MNEONGREEN OBTAINED BY DIRECTED JRNL TITL 3 EVOLUTION. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 72 1298 2016 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 27917830 JRNL DOI 10.1107/S2059798316018623 REMARK 2 REMARK 2 RESOLUTION. 1.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 69296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3648 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.24 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5031 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE SET COUNT : 265 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1745 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 228 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.50000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -1.63000 REMARK 3 B12 (A**2) : 0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.040 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.040 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.291 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1949 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1747 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2669 ; 1.593 ; 1.939 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4059 ; 0.938 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 255 ; 7.161 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;36.349 ;24.375 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 310 ;11.203 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;14.397 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 273 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2273 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 489 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 922 ; 1.038 ; 1.379 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 921 ; 1.033 ; 1.377 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1160 ; 1.432 ; 2.074 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1161 ; 1.435 ; 2.076 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1027 ; 1.312 ; 1.538 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1025 ; 1.310 ; 1.534 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1492 ; 1.576 ; 2.228 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2344 ; 2.545 ;12.309 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2211 ; 2.197 ;11.567 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3693 ; 1.090 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 57 ;25.135 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3796 ; 6.573 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LTR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001332. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953724 REMARK 200 MONOCHROMATOR : SI [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72944 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.210 REMARK 200 RESOLUTION RANGE LOW (A) : 48.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.20 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.73900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.980 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LTP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8,000, 100MM HEPES, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.64667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.32333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 76.98500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 25.66167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 128.30833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 102.64667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 51.32333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 25.66167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 76.98500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 128.30833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -44 REMARK 465 ARG A -43 REMARK 465 GLY A -42 REMARK 465 SER A -41 REMARK 465 HIS A -40 REMARK 465 HIS A -39 REMARK 465 HIS A -38 REMARK 465 HIS A -37 REMARK 465 HIS A -36 REMARK 465 HIS A -35 REMARK 465 GLY A -34 REMARK 465 MET A -33 REMARK 465 ALA A -32 REMARK 465 SER A -31 REMARK 465 MET A -30 REMARK 465 THR A -29 REMARK 465 GLY A -28 REMARK 465 GLY A -27 REMARK 465 GLN A -26 REMARK 465 GLN A -25 REMARK 465 MET A -24 REMARK 465 GLY A -23 REMARK 465 ARG A -22 REMARK 465 ASP A -21 REMARK 465 LEU A -20 REMARK 465 TYR A -19 REMARK 465 ASP A -18 REMARK 465 ASP A -17 REMARK 465 ASP A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ASP A -13 REMARK 465 PRO A -12 REMARK 465 LEU A -11 REMARK 465 GLU A -10 REMARK 465 MET A -9 REMARK 465 VAL A -8 REMARK 465 SER A -7 REMARK 465 LYS A -6 REMARK 465 GLY A -5 REMARK 465 GLU A -4 REMARK 465 GLU A -3 REMARK 465 ASP A -2 REMARK 465 VAL A 218 REMARK 465 MET A 219 REMARK 465 GLY A 220 REMARK 465 MET A 221 REMARK 465 ASP A 222 REMARK 465 GLU A 223 REMARK 465 LEU A 224 REMARK 465 TYR A 225 REMARK 465 LYS A 226 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 188 62.79 -104.19 REMARK 500 ASN A 188 60.73 -102.86 REMARK 500 SER A 202 -167.43 -115.34 REMARK 500 THR A 216 -148.80 -106.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 627 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 628 DISTANCE = 6.00 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 301 DBREF 5LTR A -44 226 PDB 5LTR 5LTR -44 226 SEQRES 1 A 269 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY MET ALA SEQRES 2 A 269 SER MET THR GLY GLY GLN GLN MET GLY ARG ASP LEU TYR SEQRES 3 A 269 ASP ASP ASP ASP LYS ASP PRO LEU GLU MET VAL SER LYS SEQRES 4 A 269 GLY GLU GLU ASP ASN MET ALA SER LEU PRO ALA THR HIS SEQRES 5 A 269 GLU LEU HIS ILE PHE GLY SER ILE ASN GLY VAL ASP PHE SEQRES 6 A 269 ASP MET VAL GLY GLN GLY THR GLY ASN PRO ASN ASP GLY SEQRES 7 A 269 TYR GLU GLU LEU ASN LEU LYS SER THR LYS GLY ASP LEU SEQRES 8 A 269 GLN PHE SER PRO TRP ILE LEU VAL PRO HIS ILE CR2 PHE SEQRES 9 A 269 HIS GLN TYR LEU PRO TYR PRO ASP GLY MET SER PRO PHE SEQRES 10 A 269 GLN ALA ALA MET VAL ASP GLY SER GLY TYR GLN VAL HIS SEQRES 11 A 269 ARG THR MET GLN PHE GLU ASP GLY ALA SER LEU THR VAL SEQRES 12 A 269 ASN TYR ARG TYR THR TYR GLU GLY SER HIS ILE LYS GLY SEQRES 13 A 269 GLU ALA GLN VAL LYS GLY THR GLY PHE PRO ALA ASP GLY SEQRES 14 A 269 PRO VAL MET THR ASN SER LEU THR ALA ALA ASP TRP CYS SEQRES 15 A 269 ARG SER LYS KCX THR TYR PRO ASN ASP LYS THR ILE ILE SEQRES 16 A 269 SER THR PHE LYS TRP SER TYR THR THR GLY ASN GLY LYS SEQRES 17 A 269 ARG TYR ARG SER THR ALA ARG THR THR TYR THR PHE ALA SEQRES 18 A 269 LYS PRO MET ALA ALA ASN TYR LEU LYS ASN GLN PRO MET SEQRES 19 A 269 TYR VAL PHE ARG LYS THR GLU LEU LYS HIS SER LYS THR SEQRES 20 A 269 GLU LEU ASN PHE LYS GLU TRP GLN LYS ALA PHE THR ASP SEQRES 21 A 269 VAL MET GLY MET ASP GLU LEU TYR LYS HET CR2 A 59 19 HET KCX A 143 18 HET CL A 301 1 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM CL CHLORIDE ION HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) FORMUL 1 CR2 C13 H13 N3 O4 FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 CL CL 1- FORMUL 3 HOH *228(H2 O) HELIX 1 AA1 SER A 49 VAL A 54 5 6 HELIX 2 AA2 PHE A 61 TYR A 64 5 4 HELIX 3 AA3 SER A 72 ASP A 80 1 9 HELIX 4 AA4 ALA A 182 ASN A 188 1 7 SHEET 1 AA113 LEU A 133 ALA A 136 0 SHEET 2 AA113 THR A 150 THR A 161 -1 O THR A 160 N THR A 134 SHEET 3 AA113 ARG A 166 PHE A 177 -1 O THR A 173 N SER A 153 SHEET 4 AA113 TYR A 84 PHE A 92 -1 N HIS A 87 O THR A 174 SHEET 5 AA113 SER A 97 GLU A 107 -1 O VAL A 100 N ARG A 88 SHEET 6 AA113 HIS A 110 THR A 120 -1 O LYS A 112 N THR A 105 SHEET 7 AA113 THR A 6 ILE A 15 1 N PHE A 12 O VAL A 117 SHEET 8 AA113 VAL A 18 GLY A 28 -1 O GLY A 26 N HIS A 7 SHEET 9 AA113 GLU A 35 SER A 41 -1 O GLU A 36 N THR A 27 SHEET 10 AA113 GLU A 205 PHE A 215 -1 O PHE A 208 N LEU A 37 SHEET 11 AA113 MET A 191 HIS A 201 -1 N LYS A 200 O ASN A 207 SHEET 12 AA113 CYS A 139 ASN A 147 -1 N KCX A 143 O MET A 191 SHEET 13 AA113 THR A 150 THR A 161 -1 O ILE A 152 N THR A 144 SHEET 1 AA2 2 PRO A 66 TYR A 67 0 SHEET 2 AA2 2 GLY A 70 MET A 71 -1 O GLY A 70 N TYR A 67 LINK C ILE A 57 N1 CR2 A 59 1555 1555 1.44 LINK C3 CR2 A 59 N PHE A 61 1555 1555 1.54 LINK C LYS A 142 N KCX A 143 1555 1555 1.34 LINK C KCX A 143 N THR A 144 1555 1555 1.34 CISPEP 1 VAL A 54 PRO A 55 0 14.81 CISPEP 2 GLN A 189 PRO A 190 0 -1.17 SITE 1 AC1 7 HIS A 62 ARG A 88 KCX A 143 SER A 153 SITE 2 AC1 7 THR A 173 TYR A 175 HOH A 411 CRYST1 72.270 72.270 153.970 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013837 0.007989 0.000000 0.00000 SCALE2 0.000000 0.015978 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006495 0.00000