HEADER HYDROLASE 07-SEP-16 5LTU TITLE CRYSTAL STRUCTURE OF NUDT4A- DIPHOSPHOINOSITOL POLYPHOSPHATE TITLE 2 PHOSPHOHYDROLASE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DIPP-2,DIADENOSINE 5',5'''-P1,P6-HEXAPHOSPHATE HYDROLASE 2, COMPND 5 NUCLEOSIDE DIPHOSPHATE-LINKED MOIETY X MOTIF 4,NUDIX MOTIF 4; COMPND 6 EC: 3.6.1.52,3.6.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NUDT4, DIPP2, KIAA0487, HDCMB47P; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE 2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.SRIKANNATHASAN,C.A.NUNEZ,C.TALLANT,P.SIEJKA,S.MATHEA,J.NEWMAN, AUTHOR 2 C.STRAIN-DAMERELL,J.M.ELKINS,N.BURGESS-BROWN,C.H.ARROWSMITH, AUTHOR 3 A.M.EDWARDS,C.BOUNTRA,F.VON DELFT,K.HUBER REVDAT 3 17-JAN-24 5LTU 1 REMARK REVDAT 2 07-FEB-18 5LTU 1 REMARK REVDAT 1 20-SEP-17 5LTU 0 JRNL AUTH V.SRIKANNATHASAN,K.HUBER JRNL TITL CRYSTAL STRUCTURE OF HUMAN NUDT4A- DIPHOSPHOINOSITOL JRNL TITL 2 POLYPHOSPHATE PHOSPHOHYDROLASE 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1682 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 17026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.420 REMARK 3 FREE R VALUE TEST SET COUNT : 922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 62.0212 - 4.2656 0.99 2360 154 0.2044 0.2220 REMARK 3 2 4.2656 - 3.3858 0.99 2271 142 0.1835 0.2126 REMARK 3 3 3.3858 - 2.9578 0.99 2304 133 0.2168 0.2365 REMARK 3 4 2.9578 - 2.6874 0.99 2313 124 0.2426 0.3147 REMARK 3 5 2.6874 - 2.4948 0.99 2281 120 0.2543 0.3103 REMARK 3 6 2.4948 - 2.3477 1.00 2295 119 0.2686 0.3364 REMARK 3 7 2.3477 - 2.2301 0.99 2280 130 0.2752 0.3122 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2017 REMARK 3 ANGLE : 0.942 2707 REMARK 3 CHIRALITY : 0.039 297 REMARK 3 PLANARITY : 0.003 346 REMARK 3 DIHEDRAL : 14.747 722 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -10.4488 3.5746 15.9172 REMARK 3 T TENSOR REMARK 3 T11: 0.2748 T22: 0.1799 REMARK 3 T33: 0.2819 T12: 0.0119 REMARK 3 T13: 0.0650 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 3.8526 L22: 0.2577 REMARK 3 L33: 2.3123 L12: -0.3464 REMARK 3 L13: 2.9274 L23: -0.4025 REMARK 3 S TENSOR REMARK 3 S11: -0.0830 S12: -0.0223 S13: 0.0853 REMARK 3 S21: -0.0145 S22: 0.0701 S23: -0.0827 REMARK 3 S31: -0.0660 S32: 0.0213 S33: 0.0182 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND SEGID AA REMARK 3 SELECTION : CHAIN B AND SEGID BA REMARK 3 ATOM PAIRS NUMBER : 1088 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LTU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001353. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92819 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R CDTE 300K REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17028 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 62.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 1.05100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, MOLREP REMARK 200 STARTING MODEL: 2DUK REMARK 200 REMARK 200 REMARK: NEEDLE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULPHATE, 0.1M TRIS PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 67.85500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.51500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 67.85500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.51500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 2 REMARK 465 LYS A 3 REMARK 465 PHE A 4 REMARK 465 LYS A 5 REMARK 465 PRO A 6 REMARK 465 ASN A 7 REMARK 465 GLN A 8 REMARK 465 SER A 40 REMARK 465 ARG A 41 REMARK 465 TYR A 42 REMARK 465 ASP A 106 REMARK 465 TRP A 107 REMARK 465 GLU A 108 REMARK 465 ASP A 109 REMARK 465 SER A 110 REMARK 465 VAL A 111 REMARK 465 ASN A 112 REMARK 465 ILE A 113 REMARK 465 CYS A 147 REMARK 465 SER A 148 REMARK 465 PRO A 149 REMARK 465 ALA A 150 REMARK 465 ASN A 151 REMARK 465 GLY A 152 REMARK 465 ASN A 153 REMARK 465 SER A 154 REMARK 465 THR A 155 REMARK 465 VAL A 156 REMARK 465 PRO A 157 REMARK 465 SER A 158 REMARK 465 LEU A 159 REMARK 465 PRO A 160 REMARK 465 ASP A 161 REMARK 465 ASN A 162 REMARK 465 ASN A 163 REMARK 465 ALA A 164 REMARK 465 LEU A 165 REMARK 465 PHE A 166 REMARK 465 VAL A 167 REMARK 465 THR A 168 REMARK 465 ALA A 169 REMARK 465 ALA A 170 REMARK 465 GLN A 171 REMARK 465 THR A 172 REMARK 465 SER A 173 REMARK 465 GLY A 174 REMARK 465 LEU A 175 REMARK 465 PRO A 176 REMARK 465 SER A 177 REMARK 465 SER A 178 REMARK 465 VAL A 179 REMARK 465 ARG A 180 REMARK 465 MET B 1 REMARK 465 MET B 2 REMARK 465 LYS B 3 REMARK 465 PHE B 4 REMARK 465 LYS B 5 REMARK 465 PRO B 6 REMARK 465 ASN B 7 REMARK 465 ARG B 41 REMARK 465 TYR B 42 REMARK 465 PRO B 43 REMARK 465 ASP B 44 REMARK 465 ASP B 109 REMARK 465 SER B 110 REMARK 465 VAL B 111 REMARK 465 ASN B 112 REMARK 465 ILE B 113 REMARK 465 GLY B 114 REMARK 465 SER B 148 REMARK 465 PRO B 149 REMARK 465 ALA B 150 REMARK 465 ASN B 151 REMARK 465 GLY B 152 REMARK 465 ASN B 153 REMARK 465 SER B 154 REMARK 465 THR B 155 REMARK 465 VAL B 156 REMARK 465 PRO B 157 REMARK 465 SER B 158 REMARK 465 LEU B 159 REMARK 465 PRO B 160 REMARK 465 ASP B 161 REMARK 465 ASN B 162 REMARK 465 ASN B 163 REMARK 465 ALA B 164 REMARK 465 LEU B 165 REMARK 465 PHE B 166 REMARK 465 VAL B 167 REMARK 465 THR B 168 REMARK 465 ALA B 169 REMARK 465 ALA B 170 REMARK 465 GLN B 171 REMARK 465 THR B 172 REMARK 465 SER B 173 REMARK 465 GLY B 174 REMARK 465 LEU B 175 REMARK 465 PRO B 176 REMARK 465 SER B 177 REMARK 465 SER B 178 REMARK 465 VAL B 179 REMARK 465 ARG B 180 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 9 OG1 CG2 REMARK 470 GLU A 29 CG CD OE1 OE2 REMARK 470 SER A 39 OG REMARK 470 ASP A 44 CG OD1 OD2 REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 ASP A 88 CG OD1 OD2 REMARK 470 GLU A 102 CG CD OE1 OE2 REMARK 470 ILE A 103 CG1 CG2 CD1 REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 ARG A 115 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 GLU A 123 CG CD OE1 OE2 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 HIS A 132 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 ARG B 27 NE CZ NH1 NH2 REMARK 470 SER B 28 OG REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 GLU B 56 CG CD OE1 OE2 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 ASP B 88 CG OD1 OD2 REMARK 470 GLU B 102 CG CD OE1 OE2 REMARK 470 ILE B 103 CG1 CG2 CD1 REMARK 470 ASP B 106 CG OD1 OD2 REMARK 470 GLU B 108 CG CD OE1 OE2 REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 GLU B 118 CG CD OE1 OE2 REMARK 470 GLU B 123 CG CD OE1 OE2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 CYS B 131 SG REMARK 470 HIS B 132 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 142 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 44 44.69 -90.15 REMARK 500 GLU B 105 -145.88 22.23 REMARK 500 TRP B 107 -164.82 66.16 REMARK 500 HIS B 132 -16.61 82.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 203 DBREF 5LTU A 1 180 UNP Q9NZJ9 NUDT4_HUMAN 1 180 DBREF 5LTU B 1 180 UNP Q9NZJ9 NUDT4_HUMAN 1 180 SEQRES 1 A 180 MET MET LYS PHE LYS PRO ASN GLN THR ARG THR TYR ASP SEQRES 2 A 180 ARG GLU GLY PHE LYS LYS ARG ALA ALA CYS LEU CYS PHE SEQRES 3 A 180 ARG SER GLU GLN GLU ASP GLU VAL LEU LEU VAL SER SER SEQRES 4 A 180 SER ARG TYR PRO ASP GLN TRP ILE VAL PRO GLY GLY GLY SEQRES 5 A 180 MET GLU PRO GLU GLU GLU PRO GLY GLY ALA ALA VAL ARG SEQRES 6 A 180 GLU VAL TYR GLU GLU ALA GLY VAL LYS GLY LYS LEU GLY SEQRES 7 A 180 ARG LEU LEU GLY ILE PHE GLU ASN GLN ASP ARG LYS HIS SEQRES 8 A 180 ARG THR TYR VAL TYR VAL LEU THR VAL THR GLU ILE LEU SEQRES 9 A 180 GLU ASP TRP GLU ASP SER VAL ASN ILE GLY ARG LYS ARG SEQRES 10 A 180 GLU TRP PHE LYS VAL GLU ASP ALA ILE LYS VAL LEU GLN SEQRES 11 A 180 CYS HIS LYS PRO VAL HIS ALA GLU TYR LEU GLU LYS LEU SEQRES 12 A 180 LYS LEU GLY CYS SER PRO ALA ASN GLY ASN SER THR VAL SEQRES 13 A 180 PRO SER LEU PRO ASP ASN ASN ALA LEU PHE VAL THR ALA SEQRES 14 A 180 ALA GLN THR SER GLY LEU PRO SER SER VAL ARG SEQRES 1 B 180 MET MET LYS PHE LYS PRO ASN GLN THR ARG THR TYR ASP SEQRES 2 B 180 ARG GLU GLY PHE LYS LYS ARG ALA ALA CYS LEU CYS PHE SEQRES 3 B 180 ARG SER GLU GLN GLU ASP GLU VAL LEU LEU VAL SER SER SEQRES 4 B 180 SER ARG TYR PRO ASP GLN TRP ILE VAL PRO GLY GLY GLY SEQRES 5 B 180 MET GLU PRO GLU GLU GLU PRO GLY GLY ALA ALA VAL ARG SEQRES 6 B 180 GLU VAL TYR GLU GLU ALA GLY VAL LYS GLY LYS LEU GLY SEQRES 7 B 180 ARG LEU LEU GLY ILE PHE GLU ASN GLN ASP ARG LYS HIS SEQRES 8 B 180 ARG THR TYR VAL TYR VAL LEU THR VAL THR GLU ILE LEU SEQRES 9 B 180 GLU ASP TRP GLU ASP SER VAL ASN ILE GLY ARG LYS ARG SEQRES 10 B 180 GLU TRP PHE LYS VAL GLU ASP ALA ILE LYS VAL LEU GLN SEQRES 11 B 180 CYS HIS LYS PRO VAL HIS ALA GLU TYR LEU GLU LYS LEU SEQRES 12 B 180 LYS LEU GLY CYS SER PRO ALA ASN GLY ASN SER THR VAL SEQRES 13 B 180 PRO SER LEU PRO ASP ASN ASN ALA LEU PHE VAL THR ALA SEQRES 14 B 180 ALA GLN THR SER GLY LEU PRO SER SER VAL ARG HET EDO A 201 4 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO B 201 4 HET EDO B 202 4 HET EDO B 203 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 8(C2 H6 O2) FORMUL 11 HOH *88(H2 O) HELIX 1 AA1 GLU A 58 GLY A 72 1 15 HELIX 2 AA2 VAL A 122 LYS A 133 1 12 HELIX 3 AA3 LYS A 133 GLY A 146 1 14 HELIX 4 AA4 GLU B 58 GLY B 72 1 15 HELIX 5 AA5 VAL B 122 GLN B 130 1 9 HELIX 6 AA6 LYS B 133 GLY B 146 1 14 SHEET 1 AA1 4 GLY A 50 GLY A 52 0 SHEET 2 AA1 4 LYS A 18 PHE A 26 -1 N ALA A 21 O GLY A 51 SHEET 3 AA1 4 HIS A 91 ILE A 103 1 O LEU A 98 N PHE A 26 SHEET 4 AA1 4 VAL A 73 ASN A 86 -1 N PHE A 84 O THR A 93 SHEET 1 AA2 3 TRP A 46 ILE A 47 0 SHEET 2 AA2 3 GLU A 33 SER A 38 -1 N VAL A 37 O ILE A 47 SHEET 3 AA2 3 ARG A 117 LYS A 121 -1 O PHE A 120 N VAL A 34 SHEET 1 AA3 4 GLY B 50 GLY B 52 0 SHEET 2 AA3 4 LYS B 18 PHE B 26 -1 N ALA B 21 O GLY B 51 SHEET 3 AA3 4 HIS B 91 ILE B 103 1 O LEU B 98 N PHE B 26 SHEET 4 AA3 4 VAL B 73 ASN B 86 -1 N GLY B 78 O VAL B 97 SHEET 1 AA4 3 TRP B 46 ILE B 47 0 SHEET 2 AA4 3 GLU B 33 SER B 38 -1 N VAL B 37 O ILE B 47 SHEET 3 AA4 3 ARG B 117 LYS B 121 -1 O PHE B 120 N VAL B 34 SITE 1 AC1 3 ARG A 20 GLY A 50 GLY A 51 SITE 1 AC2 2 GLU A 85 EDO A 203 SITE 1 AC3 3 ILE A 83 GLU A 85 EDO A 202 SITE 1 AC4 2 ALA A 71 ARG A 117 SITE 1 AC5 4 ARG B 20 ARG B 89 LYS B 133 HIS B 136 SITE 1 AC6 2 ARG B 115 HOH B 326 SITE 1 AC7 3 SER B 39 SER B 40 GLN B 45 CRYST1 135.710 41.030 74.320 90.00 122.55 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007369 0.000000 0.004703 0.00000 SCALE2 0.000000 0.024372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015963 0.00000