HEADER SUGAR BINDING PROTEIN 07-SEP-16 5LU3 TITLE THE STRUCTURE OF SPIROCHAETA THERMOPHILA CBM64 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE FAMILY 12; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPIROCHAETA THERMOPHILA (STRAIN ATCC 700085 / SOURCE 3 DSM 6578 / Z-1203); SOURCE 4 ORGANISM_TAXID: 869211; SOURCE 5 GENE: SPITH_0373; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CBM64 SPIROCHAETA THERMOPHILA X-RAY, HYDROLASE, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.S.CORREIA,M.J.ROMAO,A.L.CARVALHO REVDAT 3 05-APR-17 5LU3 1 JRNL REVDAT 2 22-FEB-17 5LU3 1 JRNL REVDAT 1 15-FEB-17 5LU3 0 JRNL AUTH V.M.PIRES,P.M.PEREIRA,J.L.BRAS,M.CORREIA,V.CARDOSO,P.BULE, JRNL AUTH 2 V.D.ALVES,S.NAJMUDIN,I.VENDITTO,L.M.FERREIRA,M.J.ROMAO, JRNL AUTH 3 A.L.CARVALHO,C.M.FONTES,D.M.PRAZERES JRNL TITL STABILITY AND LIGAND PROMISCUITY OF TYPE A JRNL TITL 2 CARBOHYDRATE-BINDING MODULES ARE ILLUSTRATED BY THE JRNL TITL 3 STRUCTURE OF SPIROCHAETA THERMOPHILA STCBM64C. JRNL REF J. BIOL. CHEM. V. 292 4847 2017 JRNL REFN ESSN 1083-351X JRNL PMID 28179427 JRNL DOI 10.1074/JBC.M116.767541 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0107 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17144 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.125 REMARK 3 R VALUE (WORKING SET) : 0.124 REMARK 3 FREE R VALUE : 0.151 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 891 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1246 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.0730 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.1520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 741 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.059 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.052 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.553 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.975 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 828 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 715 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1125 ; 1.522 ; 1.911 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1649 ; 0.988 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 95 ; 7.622 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 46 ;35.951 ;24.130 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 118 ;11.376 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;11.760 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 105 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 947 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 218 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 365 ; 1.511 ; 1.273 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 366 ; 1.509 ; 1.273 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 459 ; 1.680 ; 1.903 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 460 ; 1.678 ; 1.909 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 462 ; 2.053 ; 1.649 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 461 ; 2.044 ; 1.655 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 665 ; 2.509 ; 2.359 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 977 ; 3.545 ;12.613 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 978 ; 3.547 ;12.638 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1540 ; 1.946 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 31 ;32.218 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1572 ; 9.780 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.30 REMARK 3 ION PROBE RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LU3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200000736. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18085 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 43.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 21.80 REMARK 200 R MERGE (I) : 0.02900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 79.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.09200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 16.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1% (W/V) JEFFAMINE ED-2001, 0.1M HEPES REMARK 280 PH7.5 AND 1M SUCCINIC ACID PH7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.36900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.35150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.35150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.05350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.35150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.35150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 16.68450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.35150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.35150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 50.05350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.35150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.35150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 16.68450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 33.36900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 89 REMARK 465 HIS A 90 REMARK 465 HIS A 91 REMARK 465 HIS A 92 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 SSN A 102 O1 SSN A 102 7555 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 33 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 287 DISTANCE = 9.87 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 ASP A 24 OD1 143.6 REMARK 620 3 ASP A 24 OD2 97.3 47.4 REMARK 620 4 HOH A 270 O 149.8 66.5 112.7 REMARK 620 5 HOH A 249 O 94.3 112.8 149.4 61.6 REMARK 620 6 HOH A 231 O 85.0 87.8 92.4 96.8 60.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 103 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 23 OD1 REMARK 620 2 ASP A 24 OD1 79.7 REMARK 620 3 HOH A 270 O 79.4 80.9 REMARK 620 4 HOH A 249 O 94.5 165.6 85.1 REMARK 620 5 HOH A 231 O 78.1 109.2 153.1 82.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2NV A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SSN A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 105 DBREF 5LU3 A 1 84 UNP G0GE26 G0GE26_SPITZ 283 366 SEQADV 5LU3 LEU A 85 UNP G0GE26 EXPRESSION TAG SEQADV 5LU3 GLU A 86 UNP G0GE26 EXPRESSION TAG SEQADV 5LU3 HIS A 87 UNP G0GE26 EXPRESSION TAG SEQADV 5LU3 HIS A 88 UNP G0GE26 EXPRESSION TAG SEQADV 5LU3 HIS A 89 UNP G0GE26 EXPRESSION TAG SEQADV 5LU3 HIS A 90 UNP G0GE26 EXPRESSION TAG SEQADV 5LU3 HIS A 91 UNP G0GE26 EXPRESSION TAG SEQADV 5LU3 HIS A 92 UNP G0GE26 EXPRESSION TAG SEQRES 1 A 92 GLY GLU TYR LEU GLU MET ASP LEU PRO PHE SER TYR ASP SEQRES 2 A 92 GLY ALA GLY GLU TYR LEU TRP LYS THR ASP ASP PHE SER SEQRES 3 A 92 THR THR VAL ASP TRP GLY ARG TYR VAL ASN SER TRP ASN SEQRES 4 A 92 LEU ASP LEU LEU GLU ILE ASN GLY ASN ASP TYR THR ASN SEQRES 5 A 92 ARG TRP VAL ALA GLN HIS GLN VAL PRO PRO ALA SER ASP SEQRES 6 A 92 GLY TYR TRP TYR ILE HIS TYR LYS GLY SER LEU ALA TRP SEQRES 7 A 92 SER HIS VAL GLU MET LYS LEU GLU HIS HIS HIS HIS HIS SEQRES 8 A 92 HIS HET 2NV A 101 19 HET SSN A 102 7 HET CA A 103 2 HET NI A 104 1 HET FMT A 105 3 HETNAM 2NV 3,6,9,12,15-PENTAOXAOCTADECAN-17-AMINE HETNAM SSN 4-OXOBUTANOIC ACID HETNAM CA CALCIUM ION HETNAM NI NICKEL (II) ION HETNAM FMT FORMIC ACID HETSYN 2NV JEFFAMINE ED-2001 HETSYN SSN SUCCINIC SEMIALDEHYDE FORMUL 2 2NV C13 H29 N O5 FORMUL 3 SSN C4 H6 O3 FORMUL 4 CA CA 2+ FORMUL 5 NI NI 2+ FORMUL 6 FMT C H2 O2 FORMUL 7 HOH *87(H2 O) HELIX 1 AA1 HIS A 58 VAL A 60 5 3 SHEET 1 AA1 5 LEU A 4 GLU A 5 0 SHEET 2 AA1 5 GLY A 16 THR A 22 1 O LEU A 19 N LEU A 4 SHEET 3 AA1 5 TRP A 68 GLY A 74 -1 O ILE A 70 N TRP A 20 SHEET 4 AA1 5 LEU A 40 ILE A 45 -1 N GLU A 44 O HIS A 71 SHEET 5 AA1 5 ASN A 48 ASP A 49 -1 O ASN A 48 N ILE A 45 SHEET 1 AA2 4 PHE A 10 ASP A 13 0 SHEET 2 AA2 4 HIS A 80 LEU A 85 -1 O MET A 83 N PHE A 10 SHEET 3 AA2 4 ARG A 33 TRP A 38 -1 N ASN A 36 O GLU A 82 SHEET 4 AA2 4 VAL A 55 ALA A 56 -1 O VAL A 55 N VAL A 35 LINK OD1 ASP A 7 CA A CA A 103 1555 1555 2.25 LINK OD1 ASP A 23 CA B CA A 103 1555 1555 2.42 LINK OD1 ASP A 24 CA A CA A 103 1555 1555 2.73 LINK OD1 ASP A 24 CA B CA A 103 1555 1555 2.57 LINK OD2 ASP A 24 CA A CA A 103 1555 1555 2.73 LINK CA A CA A 103 O HOH A 270 1555 1555 3.01 LINK CA A CA A 103 O HOH A 249 1555 1555 3.19 LINK CA A CA A 103 O HOH A 231 1555 1555 3.17 LINK CA B CA A 103 O HOH A 270 1555 1555 2.29 LINK CA B CA A 103 O HOH A 249 1555 1555 2.41 LINK CA B CA A 103 O HOH A 231 1555 1555 2.47 CISPEP 1 LEU A 8 PRO A 9 0 -2.49 SITE 1 AC1 7 TRP A 54 SER A 64 ASP A 65 TYR A 69 SITE 2 AC1 7 GLU A 86 SSN A 102 HOH A 263 SITE 1 AC2 2 TRP A 31 2NV A 101 SITE 1 AC3 6 ASP A 7 ASP A 23 ASP A 24 HOH A 231 SITE 2 AC3 6 HOH A 249 HOH A 270 SITE 1 AC4 2 GLY A 47 HIS A 87 SITE 1 AC5 5 PRO A 9 ARG A 33 GLN A 57 LYS A 84 SITE 2 AC5 5 HOH A 247 CRYST1 56.703 56.703 66.738 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017636 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017636 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014984 0.00000