data_5LUY # _entry.id 5LUY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.286 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5LUY WWPDB D_1200001371 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2017-10-18 _pdbx_database_PDB_obs_spr.pdb_id 6EO7 _pdbx_database_PDB_obs_spr.replace_pdb_id 5LUY _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5LUY _pdbx_database_status.recvd_initial_deposition_date 2016-09-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dolot, R.D.' 1 'Nawrot, B.' 2 'Yang, X.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structures of human alpha-thrombin with modified 15-mer DNA aptamers' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Dolot, R.M.' 1 primary 'Nawrot, B.' 2 primary 'Yang, X.' 3 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 5LUY _cell.details ? _cell.formula_units_Z ? _cell.length_a 94.579 _cell.length_a_esd ? _cell.length_b 94.579 _cell.length_b_esd ? _cell.length_c 125.566 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5LUY _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'GA68B2 - modified human thrombin binding aptamer' 4826.141 1 ? ? ? ;Thrombin-specific 15-mer DNA aptamer containing 5-(3-(acetamide-N-yl)-1-propen-1-yl)-2'-deoxyuridine residue ; 2 polymer nat Prothrombin 4096.534 1 3.4.21.5 ? ? ? 3 polymer nat Prothrombin 29780.219 1 3.4.21.5 ? ? ? 4 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 5 non-polymer syn 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' 453.986 1 ? ? ? ? 6 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 7 non-polymer man N-ACETYL-D-GLUCOSAMINE 221.208 1 ? ? ? ? 8 water nat water 18.015 232 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 2 'Coagulation factor II' 3 'Coagulation factor II' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DG)(DG)(DT)(8DT)(DG)(DG)(DT)(DG)(DT)(DG)(DG)(DT)(DT)(DG)(DG)' GGTUGGTGTGGTTGG D ? 2 'polypeptide(L)' no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L ? 3 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; H ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DG n 1 3 DT n 1 4 8DT n 1 5 DG n 1 6 DG n 1 7 DT n 1 8 DG n 1 9 DT n 1 10 DG n 1 11 DG n 1 12 DT n 1 13 DT n 1 14 DG n 1 15 DG n 2 1 THR n 2 2 PHE n 2 3 GLY n 2 4 SER n 2 5 GLY n 2 6 GLU n 2 7 ALA n 2 8 ASP n 2 9 CYS n 2 10 GLY n 2 11 LEU n 2 12 ARG n 2 13 PRO n 2 14 LEU n 2 15 PHE n 2 16 GLU n 2 17 LYS n 2 18 LYS n 2 19 SER n 2 20 LEU n 2 21 GLU n 2 22 ASP n 2 23 LYS n 2 24 THR n 2 25 GLU n 2 26 ARG n 2 27 GLU n 2 28 LEU n 2 29 LEU n 2 30 GLU n 2 31 SER n 2 32 TYR n 2 33 ILE n 2 34 ASP n 2 35 GLY n 2 36 ARG n 3 1 ILE n 3 2 VAL n 3 3 GLU n 3 4 GLY n 3 5 SER n 3 6 ASP n 3 7 ALA n 3 8 GLU n 3 9 ILE n 3 10 GLY n 3 11 MET n 3 12 SER n 3 13 PRO n 3 14 TRP n 3 15 GLN n 3 16 VAL n 3 17 MET n 3 18 LEU n 3 19 PHE n 3 20 ARG n 3 21 LYS n 3 22 SER n 3 23 PRO n 3 24 GLN n 3 25 GLU n 3 26 LEU n 3 27 LEU n 3 28 CYS n 3 29 GLY n 3 30 ALA n 3 31 SER n 3 32 LEU n 3 33 ILE n 3 34 SER n 3 35 ASP n 3 36 ARG n 3 37 TRP n 3 38 VAL n 3 39 LEU n 3 40 THR n 3 41 ALA n 3 42 ALA n 3 43 HIS n 3 44 CYS n 3 45 LEU n 3 46 LEU n 3 47 TYR n 3 48 PRO n 3 49 PRO n 3 50 TRP n 3 51 ASP n 3 52 LYS n 3 53 ASN n 3 54 PHE n 3 55 THR n 3 56 GLU n 3 57 ASN n 3 58 ASP n 3 59 LEU n 3 60 LEU n 3 61 VAL n 3 62 ARG n 3 63 ILE n 3 64 GLY n 3 65 LYS n 3 66 HIS n 3 67 SER n 3 68 ARG n 3 69 THR n 3 70 ARG n 3 71 TYR n 3 72 GLU n 3 73 ARG n 3 74 ASN n 3 75 ILE n 3 76 GLU n 3 77 LYS n 3 78 ILE n 3 79 SER n 3 80 MET n 3 81 LEU n 3 82 GLU n 3 83 LYS n 3 84 ILE n 3 85 TYR n 3 86 ILE n 3 87 HIS n 3 88 PRO n 3 89 ARG n 3 90 TYR n 3 91 ASN n 3 92 TRP n 3 93 ARG n 3 94 GLU n 3 95 ASN n 3 96 LEU n 3 97 ASP n 3 98 ARG n 3 99 ASP n 3 100 ILE n 3 101 ALA n 3 102 LEU n 3 103 MET n 3 104 LYS n 3 105 LEU n 3 106 LYS n 3 107 LYS n 3 108 PRO n 3 109 VAL n 3 110 ALA n 3 111 PHE n 3 112 SER n 3 113 ASP n 3 114 TYR n 3 115 ILE n 3 116 HIS n 3 117 PRO n 3 118 VAL n 3 119 CYS n 3 120 LEU n 3 121 PRO n 3 122 ASP n 3 123 ARG n 3 124 GLU n 3 125 THR n 3 126 ALA n 3 127 ALA n 3 128 SER n 3 129 LEU n 3 130 LEU n 3 131 GLN n 3 132 ALA n 3 133 GLY n 3 134 TYR n 3 135 LYS n 3 136 GLY n 3 137 ARG n 3 138 VAL n 3 139 THR n 3 140 GLY n 3 141 TRP n 3 142 GLY n 3 143 ASN n 3 144 LEU n 3 145 LYS n 3 146 GLU n 3 147 THR n 3 148 TRP n 3 149 THR n 3 150 ALA n 3 151 ASN n 3 152 VAL n 3 153 GLY n 3 154 LYS n 3 155 GLY n 3 156 GLN n 3 157 PRO n 3 158 SER n 3 159 VAL n 3 160 LEU n 3 161 GLN n 3 162 VAL n 3 163 VAL n 3 164 ASN n 3 165 LEU n 3 166 PRO n 3 167 ILE n 3 168 VAL n 3 169 GLU n 3 170 ARG n 3 171 PRO n 3 172 VAL n 3 173 CYS n 3 174 LYS n 3 175 ASP n 3 176 SER n 3 177 THR n 3 178 ARG n 3 179 ILE n 3 180 ARG n 3 181 ILE n 3 182 THR n 3 183 ASP n 3 184 ASN n 3 185 MET n 3 186 PHE n 3 187 CYS n 3 188 ALA n 3 189 GLY n 3 190 TYR n 3 191 LYS n 3 192 PRO n 3 193 ASP n 3 194 GLU n 3 195 GLY n 3 196 LYS n 3 197 ARG n 3 198 GLY n 3 199 ASP n 3 200 ALA n 3 201 CYS n 3 202 GLU n 3 203 GLY n 3 204 ASP n 3 205 SER n 3 206 GLY n 3 207 GLY n 3 208 PRO n 3 209 PHE n 3 210 VAL n 3 211 MET n 3 212 LYS n 3 213 SER n 3 214 PRO n 3 215 PHE n 3 216 ASN n 3 217 ASN n 3 218 ARG n 3 219 TRP n 3 220 TYR n 3 221 GLN n 3 222 MET n 3 223 GLY n 3 224 ILE n 3 225 VAL n 3 226 SER n 3 227 TRP n 3 228 GLY n 3 229 GLU n 3 230 GLY n 3 231 CYS n 3 232 ASP n 3 233 ARG n 3 234 ASP n 3 235 GLY n 3 236 LYS n 3 237 TYR n 3 238 GLY n 3 239 PHE n 3 240 TYR n 3 241 THR n 3 242 HIS n 3 243 VAL n 3 244 PHE n 3 245 ARG n 3 246 LEU n 3 247 LYS n 3 248 LYS n 3 249 TRP n 3 250 ILE n 3 251 GLN n 3 252 LYS n 3 253 VAL n 3 254 ILE n 3 255 ASP n 3 256 GLN n 3 257 PHE n 3 258 GLY n 3 259 GLU n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 2 1 sample 1 36 Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 1 259 Human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 15 _pdbx_entity_src_syn.organism_scientific unidentified _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32644 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 5LUY 5LUY ? 1 ? 1 2 UNP THRB_HUMAN P00734 ? 2 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR 328 3 UNP THRB_HUMAN P00734 ? 3 ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; 364 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5LUY D 1 ? 15 ? 5LUY 401 ? 415 ? 401 415 2 2 5LUY L 1 ? 36 ? P00734 328 ? 363 ? 328 363 3 3 5LUY H 1 ? 259 ? P00734 364 ? 622 ? 364 622 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0G6 peptide-like . 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' PPACK 'C21 H34 Cl N6 O3 1' 453.986 8DT 'DNA linking' n "5-(3-(acetamide-N-yl)-1-propen-1-yl)-2'-deoxyuridine" ? 'C14 H20 N3 O9 P' 405.297 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NAG D-saccharide . N-ACETYL-D-GLUCOSAMINE ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LUY _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 4.19 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 70.65 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 281 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '25% w/v PEG4000, 24% v/v 2-propanol, 0.2 M Sodium citrate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-04-29 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.918409 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'BESSY BEAMLINE 14.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.918409 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 14.1 _diffrn_source.pdbx_synchrotron_site BESSY # _reflns.B_iso_Wilson_estimate 31.52 _reflns.entry_id 5LUY _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.24 _reflns.d_resolution_low 47.29 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 30342 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.4 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 7.0 _reflns.pdbx_Rmerge_I_obs 0.091 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 15.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.24 _reflns_shell.d_res_low 2.31 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.7 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 73.4 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.702 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.2 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.702 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 1.13 _refine.aniso_B[1][2] 0.57 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 1.13 _refine.aniso_B[2][3] -0.00 _refine.aniso_B[3][3] -3.67 _refine.B_iso_max ? _refine.B_iso_mean 44.813 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.965 _refine.correlation_coeff_Fo_to_Fc_free 0.940 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5LUY _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.24 _refine.ls_d_res_low 47.29 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 28729 _refine.ls_number_reflns_R_free 1583 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.31 _refine.ls_percent_reflns_R_free 5.2 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.16289 _refine.ls_R_factor_R_free 0.20812 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.16043 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1hao _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.157 _refine.pdbx_overall_ESU_R_Free 0.156 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 4.914 _refine.overall_SU_ML 0.114 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 2336 _refine_hist.pdbx_number_atoms_nucleic_acid 321 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 232 _refine_hist.number_atoms_total 2935 _refine_hist.d_res_high 2.24 _refine_hist.d_res_low 47.29 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.020 0.018 2868 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.005 0.020 2555 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 2.303 1.878 3938 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.230 3.000 5905 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.924 5.000 299 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 35.741 23.305 118 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 17.864 15.000 445 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 16.096 15.000 22 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.114 0.200 394 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.011 0.021 3017 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 664 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 4.815 4.031 1187 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 4.779 4.017 1186 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 7.496 5.999 1489 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 7.513 6.013 1490 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 5.671 4.716 1681 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 5.669 4.719 1682 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 8.496 6.861 2448 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 11.161 44.843 3410 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 11.193 44.627 3376 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.240 _refine_ls_shell.d_res_low 2.298 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 108 _refine_ls_shell.number_reflns_R_work 1554 _refine_ls_shell.percent_reflns_obs 71.82 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.282 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.284 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5LUY _struct.title ;X-ray structure of the complex between human alpha-thrombin and modified 15-mer DNA aptamer containing 5-(3-(acetamide-N-yl)-1-propen-1-yl)-2'-deoxyuridine residue ; _struct.pdbx_descriptor 'Prothrombin/DNA Complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LUY _struct_keywords.text 'alpha thrombin, aptamer, thrombin-mTBA, complex, HYDROLASE-DNA complex' _struct_keywords.pdbx_keywords hydrolase/dna # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 8 ? I N N 8 ? J N N 8 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PHE B 15 ? SER B 19 ? PHE L 342 SER L 346 5 ? 5 HELX_P HELX_P2 AA2 THR B 24 ? ASP B 34 ? THR L 351 ASP L 361 1 ? 11 HELX_P HELX_P3 AA3 ALA C 41 ? CYS C 44 ? ALA H 404 CYS H 407 5 ? 4 HELX_P HELX_P4 AA4 PRO C 48 ? ASP C 51 ? PRO H 411 ASP H 414 5 ? 4 HELX_P HELX_P5 AA5 THR C 55 ? ASN C 57 ? THR H 418 ASN H 420 5 ? 3 HELX_P HELX_P6 AA6 ASP C 122 ? LEU C 130 ? ASP H 485 LEU H 493 1 ? 9 HELX_P HELX_P7 AA7 GLU C 169 ? SER C 176 ? GLU H 532 SER H 539 1 ? 8 HELX_P HELX_P8 AA8 LEU C 246 ? PHE C 257 ? LEU H 609 PHE H 620 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? B CYS 9 SG ? ? ? 1_555 C CYS 119 SG ? ? L CYS 336 H CYS 482 1_555 ? ? ? ? ? ? ? 2.128 ? disulf2 disulf ? ? C CYS 28 SG ? ? ? 1_555 C CYS 44 SG ? ? H CYS 391 H CYS 407 1_555 ? ? ? ? ? ? ? 2.143 ? disulf3 disulf ? ? C CYS 173 SG ? ? ? 1_555 C CYS 187 SG ? ? H CYS 536 H CYS 550 1_555 ? ? ? ? ? ? ? 2.087 ? disulf4 disulf ? ? C CYS 201 SG ? ? ? 1_555 C CYS 231 SG ? ? H CYS 564 H CYS 594 1_555 ? ? ? ? ? ? ? 2.138 ? metalc1 metalc ? ? A DG 1 O6 ? ? ? 1_555 D K . K ? ? D DG 401 D K 501 1_555 ? ? ? ? ? ? ? 2.805 ? metalc2 metalc ? ? A DG 2 O6 ? ? ? 1_555 D K . K ? ? D DG 402 D K 501 1_555 ? ? ? ? ? ? ? 2.675 ? covale1 covale both ? A DT 3 "O3'" ? ? ? 1_555 A 8DT 4 P ? ? D DT 403 D 8DT 404 1_555 ? ? ? ? ? ? ? 1.542 ? covale2 covale one ? A 8DT 4 "O3'" ? ? ? 1_555 A DG 5 P ? ? D 8DT 404 D DG 405 1_555 ? ? ? ? ? ? ? 1.498 ? metalc3 metalc ? ? A DG 5 O6 ? ? ? 1_555 D K . K ? ? D DG 405 D K 501 1_555 ? ? ? ? ? ? ? 2.757 ? metalc4 metalc ? ? A DG 6 O6 ? ? ? 1_555 D K . K ? ? D DG 406 D K 501 1_555 ? ? ? ? ? ? ? 2.842 ? metalc5 metalc ? ? A DG 10 O6 ? ? ? 1_555 D K . K ? ? D DG 410 D K 501 1_555 ? ? ? ? ? ? ? 2.572 ? metalc6 metalc ? ? A DG 11 O6 ? ? ? 1_555 D K . K ? ? D DG 411 D K 501 1_555 ? ? ? ? ? ? ? 2.853 ? metalc7 metalc ? ? A DG 14 O6 ? ? ? 1_555 D K . K ? ? D DG 414 D K 501 1_555 ? ? ? ? ? ? ? 2.746 ? metalc8 metalc ? ? A DG 15 O6 ? ? ? 1_555 D K . K ? ? D DG 415 D K 501 1_555 ? ? ? ? ? ? ? 2.846 ? covale3 covale one ? C ASN 53 CG ? ? ? 1_555 G NAG . C1 ? ? H ASN 416 H NAG 703 1_555 ? ? ? ? ? ? ? 1.553 ? covale4 covale one ? C ASN 53 OD1 ? ? ? 1_555 G NAG . C1 ? ? H ASN 416 H NAG 703 1_555 ? ? ? ? ? ? ? 1.480 ? covale5 covale one ? C ASN 53 ND2 ? ? ? 1_555 G NAG . C1 ? ? H ASN 416 H NAG 703 1_555 ? ? ? ? ? ? ? 1.359 ? covale6 covale none ? C ASN 53 ND2 ? ? ? 1_555 G NAG . O5 ? ? H ASN 416 H NAG 703 1_555 ? ? ? ? ? ? ? 1.495 ? metalc9 metalc ? ? C ARG 233 O ? ? ? 1_555 F NA . NA ? ? H ARG 596 H NA 702 1_555 ? ? ? ? ? ? ? 2.507 ? metalc10 metalc ? ? C LYS 236 O ? ? ? 1_555 F NA . NA ? ? H LYS 599 H NA 702 1_555 ? ? ? ? ? ? ? 2.352 ? metalc11 metalc ? ? F NA . NA ? ? ? 1_555 J HOH . O ? ? H NA 702 H HOH 824 1_555 ? ? ? ? ? ? ? 2.373 ? metalc12 metalc ? ? F NA . NA ? ? ? 1_555 J HOH . O ? ? H NA 702 H HOH 854 1_555 ? ? ? ? ? ? ? 2.707 ? metalc13 metalc ? ? F NA . NA ? ? ? 1_555 J HOH . O ? ? H NA 702 H HOH 918 1_555 ? ? ? ? ? ? ? 2.431 ? metalc14 metalc ? ? F NA . NA ? ? ? 1_555 J HOH . O ? ? H NA 702 H HOH 842 1_555 ? ? ? ? ? ? ? 2.410 ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DG 6 O6 ? ? D DG 401 D DG 406 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DG 6 N7 ? ? D DG 401 D DG 406 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog3 hydrog ? ? A DG 1 N7 ? ? ? 1_555 A DG 15 N2 ? ? D DG 401 D DG 415 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog4 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DG 15 N1 ? ? D DG 401 D DG 415 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog5 hydrog ? ? A DG 2 N7 ? ? ? 1_555 A DG 5 N2 ? ? D DG 402 D DG 405 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DG 5 N1 ? ? D DG 402 D DG 405 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog7 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DG 14 O6 ? ? D DG 402 D DG 414 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog8 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DG 14 N7 ? ? D DG 402 D DG 414 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog9 hydrog ? ? A DG 5 N7 ? ? ? 1_555 A DG 11 N2 ? ? D DG 405 D DG 411 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog10 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DG 11 N1 ? ? D DG 405 D DG 411 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog11 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DG 10 O6 ? ? D DG 406 D DG 410 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog12 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DG 10 N7 ? ? D DG 406 D DG 410 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog13 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DG 15 O6 ? ? D DG 410 D DG 415 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog14 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DG 15 N7 ? ? D DG 410 D DG 415 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog15 hydrog ? ? A DG 11 N7 ? ? ? 1_555 A DG 14 N2 ? ? D DG 411 D DG 414 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog16 hydrog ? ? A DG 11 O6 ? ? ? 1_555 A DG 14 N1 ? ? D DG 411 D DG 414 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? covale ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id C _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 385 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 C _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 386 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -7.10 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 7 ? AA2 ? 7 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 SER C 5 ? ASP C 6 ? SER H 368 ASP H 369 AA1 2 GLN C 161 ? PRO C 166 ? GLN H 524 PRO H 529 AA1 3 LYS C 135 ? GLY C 140 ? LYS H 498 GLY H 503 AA1 4 PRO C 208 ? LYS C 212 ? PRO H 571 LYS H 575 AA1 5 TRP C 219 ? TRP C 227 ? TRP H 582 TRP H 590 AA1 6 GLY C 238 ? HIS C 242 ? GLY H 601 HIS H 605 AA1 7 MET C 185 ? ALA C 188 ? MET H 548 ALA H 551 AA2 1 GLN C 15 ? ARG C 20 ? GLN H 378 ARG H 383 AA2 2 GLU C 25 ? LEU C 32 ? GLU H 388 LEU H 395 AA2 3 TRP C 37 ? THR C 40 ? TRP H 400 THR H 403 AA2 4 ALA C 101 ? LEU C 105 ? ALA H 464 LEU H 468 AA2 5 LYS C 77 ? ILE C 86 ? LYS H 440 ILE H 449 AA2 6 LEU C 59 ? ILE C 63 ? LEU H 422 ILE H 426 AA2 7 GLN C 15 ? ARG C 20 ? GLN H 378 ARG H 383 AA3 1 LEU C 46 ? TYR C 47 ? LEU H 409 TYR H 410 AA3 2 LYS C 52 ? ASN C 53 ? LYS H 415 ASN H 416 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N SER C 5 ? N SER H 368 O VAL C 162 ? O VAL H 525 AA1 2 3 O VAL C 163 ? O VAL H 526 N VAL C 138 ? N VAL H 501 AA1 3 4 N ARG C 137 ? N ARG H 500 O VAL C 210 ? O VAL H 573 AA1 4 5 N MET C 211 ? N MET H 574 O TYR C 220 ? O TYR H 583 AA1 5 6 N TRP C 227 ? N TRP H 590 O PHE C 239 ? O PHE H 602 AA1 6 7 O TYR C 240 ? O TYR H 603 N PHE C 186 ? N PHE H 549 AA2 1 2 N ARG C 20 ? N ARG H 383 O GLU C 25 ? O GLU H 388 AA2 2 3 N SER C 31 ? N SER H 394 O LEU C 39 ? O LEU H 402 AA2 3 4 N VAL C 38 ? N VAL H 401 O MET C 103 ? O MET H 466 AA2 4 5 O LYS C 104 ? O LYS H 467 N GLU C 82 ? N GLU H 445 AA2 5 6 O LYS C 77 ? O LYS H 440 N ILE C 63 ? N ILE H 426 AA2 6 7 O ARG C 62 ? O ARG H 425 N MET C 17 ? N MET H 380 AA3 1 2 N TYR C 47 ? N TYR H 410 O LYS C 52 ? O LYS H 415 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software D K 501 ? 8 'binding site for residue K D 501' AC2 Software H 0G6 701 ? 19 'binding site for residue 0G6 H 701' AC3 Software H NA 702 ? 6 'binding site for residue NA H 702' AC4 Software H NAG 703 ? 1 'binding site for Mono-Saccharide NAG H 703 bound to ASN H 416' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 DG A 1 ? DG D 401 . ? 1_555 ? 2 AC1 8 DG A 2 ? DG D 402 . ? 1_555 ? 3 AC1 8 DG A 5 ? DG D 405 . ? 1_555 ? 4 AC1 8 DG A 6 ? DG D 406 . ? 1_555 ? 5 AC1 8 DG A 10 ? DG D 410 . ? 1_555 ? 6 AC1 8 DG A 11 ? DG D 411 . ? 1_555 ? 7 AC1 8 DG A 14 ? DG D 414 . ? 1_555 ? 8 AC1 8 DG A 15 ? DG D 415 . ? 1_555 ? 9 AC2 19 HIS C 43 ? HIS H 406 . ? 1_555 ? 10 AC2 19 TYR C 47 ? TYR H 410 . ? 1_555 ? 11 AC2 19 TRP C 50 ? TRP H 413 . ? 1_555 ? 12 AC2 19 GLU C 94 ? GLU H 457 . ? 1_555 ? 13 AC2 19 LEU C 96 ? LEU H 459 . ? 1_555 ? 14 AC2 19 ASP C 199 ? ASP H 562 . ? 1_555 ? 15 AC2 19 ALA C 200 ? ALA H 563 . ? 1_555 ? 16 AC2 19 GLY C 203 ? GLY H 566 . ? 1_555 ? 17 AC2 19 SER C 205 ? SER H 568 . ? 1_555 ? 18 AC2 19 SER C 226 ? SER H 589 . ? 1_555 ? 19 AC2 19 TRP C 227 ? TRP H 590 . ? 1_555 ? 20 AC2 19 GLY C 228 ? GLY H 591 . ? 1_555 ? 21 AC2 19 GLY C 230 ? GLY H 593 . ? 1_555 ? 22 AC2 19 GLY C 238 ? GLY H 601 . ? 1_555 ? 23 AC2 19 HOH J . ? HOH H 813 . ? 1_555 ? 24 AC2 19 HOH J . ? HOH H 815 . ? 1_555 ? 25 AC2 19 HOH J . ? HOH H 826 . ? 1_555 ? 26 AC2 19 HOH J . ? HOH H 847 . ? 1_555 ? 27 AC2 19 GLY B 5 ? GLY L 332 . ? 2_544 ? 28 AC3 6 ARG C 233 ? ARG H 596 . ? 1_555 ? 29 AC3 6 LYS C 236 ? LYS H 599 . ? 1_555 ? 30 AC3 6 HOH J . ? HOH H 824 . ? 1_555 ? 31 AC3 6 HOH J . ? HOH H 842 . ? 1_555 ? 32 AC3 6 HOH J . ? HOH H 854 . ? 1_555 ? 33 AC3 6 HOH J . ? HOH H 918 . ? 1_555 ? 34 AC4 1 ASN C 53 ? ASN H 416 . ? 1_555 ? # _atom_sites.entry_id 5LUY _atom_sites.fract_transf_matrix[1][1] 0.010573 _atom_sites.fract_transf_matrix[1][2] 0.006104 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012209 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007964 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N NA O P S # loop_ _database_PDB_caveat.text 'NAG H 703 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 401 401 DG DG D . n A 1 2 DG 2 402 402 DG DG D . n A 1 3 DT 3 403 403 DT DT D . n A 1 4 8DT 4 404 404 8DT 8DT D . n A 1 5 DG 5 405 405 DG DG D . n A 1 6 DG 6 406 406 DG DG D . n A 1 7 DT 7 407 407 DT DT D . n A 1 8 DG 8 408 408 DG DG D . n A 1 9 DT 9 409 409 DT DT D . n A 1 10 DG 10 410 410 DG DG D . n A 1 11 DG 11 411 411 DG DG D . n A 1 12 DT 12 412 412 DT DT D . n A 1 13 DT 13 413 413 DT DT D . n A 1 14 DG 14 414 414 DG DG D . n A 1 15 DG 15 415 415 DG DG D . n B 2 1 THR 1 328 ? ? ? L . n B 2 2 PHE 2 329 ? ? ? L . n B 2 3 GLY 3 330 ? ? ? L . n B 2 4 SER 4 331 ? ? ? L . n B 2 5 GLY 5 332 332 GLY GLY L . n B 2 6 GLU 6 333 333 GLU GLU L . n B 2 7 ALA 7 334 334 ALA ALA L . n B 2 8 ASP 8 335 335 ASP ASP L . n B 2 9 CYS 9 336 336 CYS CYS L . n B 2 10 GLY 10 337 337 GLY GLY L . n B 2 11 LEU 11 338 338 LEU LEU L . n B 2 12 ARG 12 339 339 ARG ARG L . n B 2 13 PRO 13 340 340 PRO PRO L . n B 2 14 LEU 14 341 341 LEU LEU L . n B 2 15 PHE 15 342 342 PHE PHE L . n B 2 16 GLU 16 343 343 GLU GLU L . n B 2 17 LYS 17 344 344 LYS LYS L . n B 2 18 LYS 18 345 345 LYS LYS L . n B 2 19 SER 19 346 346 SER SER L . n B 2 20 LEU 20 347 347 LEU LEU L . n B 2 21 GLU 21 348 348 GLU GLU L . n B 2 22 ASP 22 349 349 ASP ASP L . n B 2 23 LYS 23 350 350 LYS LYS L . n B 2 24 THR 24 351 351 THR THR L . n B 2 25 GLU 25 352 352 GLU GLU L . n B 2 26 ARG 26 353 353 ARG ARG L . n B 2 27 GLU 27 354 354 GLU GLU L . n B 2 28 LEU 28 355 355 LEU LEU L . n B 2 29 LEU 29 356 356 LEU LEU L . n B 2 30 GLU 30 357 357 GLU GLU L . n B 2 31 SER 31 358 358 SER SER L . n B 2 32 TYR 32 359 359 TYR TYR L . n B 2 33 ILE 33 360 360 ILE ILE L . n B 2 34 ASP 34 361 361 ASP ASP L . n B 2 35 GLY 35 362 ? ? ? L . n B 2 36 ARG 36 363 ? ? ? L . n C 3 1 ILE 1 364 364 ILE ILE H . n C 3 2 VAL 2 365 365 VAL VAL H . n C 3 3 GLU 3 366 366 GLU GLU H . n C 3 4 GLY 4 367 367 GLY GLY H . n C 3 5 SER 5 368 368 SER SER H . n C 3 6 ASP 6 369 369 ASP ASP H . n C 3 7 ALA 7 370 370 ALA ALA H . n C 3 8 GLU 8 371 371 GLU GLU H . n C 3 9 ILE 9 372 372 ILE ILE H . n C 3 10 GLY 10 373 373 GLY GLY H . n C 3 11 MET 11 374 374 MET MET H . n C 3 12 SER 12 375 375 SER SER H . n C 3 13 PRO 13 376 376 PRO PRO H . n C 3 14 TRP 14 377 377 TRP TRP H . n C 3 15 GLN 15 378 378 GLN GLN H . n C 3 16 VAL 16 379 379 VAL VAL H . n C 3 17 MET 17 380 380 MET MET H . n C 3 18 LEU 18 381 381 LEU LEU H . n C 3 19 PHE 19 382 382 PHE PHE H . n C 3 20 ARG 20 383 383 ARG ARG H . n C 3 21 LYS 21 384 384 LYS LYS H . n C 3 22 SER 22 385 385 SER SER H . n C 3 23 PRO 23 386 386 PRO PRO H . n C 3 24 GLN 24 387 387 GLN GLN H . n C 3 25 GLU 25 388 388 GLU GLU H . n C 3 26 LEU 26 389 389 LEU LEU H . n C 3 27 LEU 27 390 390 LEU LEU H . n C 3 28 CYS 28 391 391 CYS CYS H . n C 3 29 GLY 29 392 392 GLY GLY H . n C 3 30 ALA 30 393 393 ALA ALA H . n C 3 31 SER 31 394 394 SER SER H . n C 3 32 LEU 32 395 395 LEU LEU H . n C 3 33 ILE 33 396 396 ILE ILE H . n C 3 34 SER 34 397 397 SER SER H . n C 3 35 ASP 35 398 398 ASP ASP H . n C 3 36 ARG 36 399 399 ARG ARG H . n C 3 37 TRP 37 400 400 TRP TRP H . n C 3 38 VAL 38 401 401 VAL VAL H . n C 3 39 LEU 39 402 402 LEU LEU H . n C 3 40 THR 40 403 403 THR THR H . n C 3 41 ALA 41 404 404 ALA ALA H . n C 3 42 ALA 42 405 405 ALA ALA H . n C 3 43 HIS 43 406 406 HIS HIS H . n C 3 44 CYS 44 407 407 CYS CYS H . n C 3 45 LEU 45 408 408 LEU LEU H . n C 3 46 LEU 46 409 409 LEU LEU H . n C 3 47 TYR 47 410 410 TYR TYR H . n C 3 48 PRO 48 411 411 PRO PRO H . n C 3 49 PRO 49 412 412 PRO PRO H . n C 3 50 TRP 50 413 413 TRP TRP H . n C 3 51 ASP 51 414 414 ASP ASP H . n C 3 52 LYS 52 415 415 LYS LYS H . n C 3 53 ASN 53 416 416 ASN ASN H . n C 3 54 PHE 54 417 417 PHE PHE H . n C 3 55 THR 55 418 418 THR THR H . n C 3 56 GLU 56 419 419 GLU GLU H . n C 3 57 ASN 57 420 420 ASN ASN H . n C 3 58 ASP 58 421 421 ASP ASP H . n C 3 59 LEU 59 422 422 LEU LEU H . n C 3 60 LEU 60 423 423 LEU LEU H . n C 3 61 VAL 61 424 424 VAL VAL H . n C 3 62 ARG 62 425 425 ARG ARG H . n C 3 63 ILE 63 426 426 ILE ILE H . n C 3 64 GLY 64 427 427 GLY GLY H . n C 3 65 LYS 65 428 428 LYS LYS H . n C 3 66 HIS 66 429 429 HIS HIS H . n C 3 67 SER 67 430 430 SER SER H . n C 3 68 ARG 68 431 431 ARG ARG H . n C 3 69 THR 69 432 432 THR THR H . n C 3 70 ARG 70 433 433 ARG ARG H . n C 3 71 TYR 71 434 434 TYR TYR H . n C 3 72 GLU 72 435 435 GLU GLU H . n C 3 73 ARG 73 436 436 ARG ARG H . n C 3 74 ASN 74 437 437 ASN ASN H . n C 3 75 ILE 75 438 438 ILE ILE H . n C 3 76 GLU 76 439 439 GLU GLU H . n C 3 77 LYS 77 440 440 LYS LYS H . n C 3 78 ILE 78 441 441 ILE ILE H . n C 3 79 SER 79 442 442 SER SER H . n C 3 80 MET 80 443 443 MET MET H . n C 3 81 LEU 81 444 444 LEU LEU H . n C 3 82 GLU 82 445 445 GLU GLU H . n C 3 83 LYS 83 446 446 LYS LYS H . n C 3 84 ILE 84 447 447 ILE ILE H . n C 3 85 TYR 85 448 448 TYR TYR H . n C 3 86 ILE 86 449 449 ILE ILE H . n C 3 87 HIS 87 450 450 HIS HIS H . n C 3 88 PRO 88 451 451 PRO PRO H . n C 3 89 ARG 89 452 452 ARG ARG H . n C 3 90 TYR 90 453 453 TYR TYR H . n C 3 91 ASN 91 454 454 ASN ASN H . n C 3 92 TRP 92 455 455 TRP TRP H . n C 3 93 ARG 93 456 456 ARG ARG H . n C 3 94 GLU 94 457 457 GLU GLU H . n C 3 95 ASN 95 458 458 ASN ASN H . n C 3 96 LEU 96 459 459 LEU LEU H . n C 3 97 ASP 97 460 460 ASP ASP H . n C 3 98 ARG 98 461 461 ARG ARG H . n C 3 99 ASP 99 462 462 ASP ASP H . n C 3 100 ILE 100 463 463 ILE ILE H . n C 3 101 ALA 101 464 464 ALA ALA H . n C 3 102 LEU 102 465 465 LEU LEU H . n C 3 103 MET 103 466 466 MET MET H . n C 3 104 LYS 104 467 467 LYS LYS H . n C 3 105 LEU 105 468 468 LEU LEU H . n C 3 106 LYS 106 469 469 LYS LYS H . n C 3 107 LYS 107 470 470 LYS LYS H . n C 3 108 PRO 108 471 471 PRO PRO H . n C 3 109 VAL 109 472 472 VAL VAL H . n C 3 110 ALA 110 473 473 ALA ALA H . n C 3 111 PHE 111 474 474 PHE PHE H . n C 3 112 SER 112 475 475 SER SER H . n C 3 113 ASP 113 476 476 ASP ASP H . n C 3 114 TYR 114 477 477 TYR TYR H . n C 3 115 ILE 115 478 478 ILE ILE H . n C 3 116 HIS 116 479 479 HIS HIS H . n C 3 117 PRO 117 480 480 PRO PRO H . n C 3 118 VAL 118 481 481 VAL VAL H . n C 3 119 CYS 119 482 482 CYS CYS H . n C 3 120 LEU 120 483 483 LEU LEU H . n C 3 121 PRO 121 484 484 PRO PRO H . n C 3 122 ASP 122 485 485 ASP ASP H . n C 3 123 ARG 123 486 486 ARG ARG H . n C 3 124 GLU 124 487 487 GLU GLU H . n C 3 125 THR 125 488 488 THR THR H . n C 3 126 ALA 126 489 489 ALA ALA H . n C 3 127 ALA 127 490 490 ALA ALA H . n C 3 128 SER 128 491 491 SER SER H . n C 3 129 LEU 129 492 492 LEU LEU H . n C 3 130 LEU 130 493 493 LEU LEU H . n C 3 131 GLN 131 494 494 GLN GLN H . n C 3 132 ALA 132 495 495 ALA ALA H . n C 3 133 GLY 133 496 496 GLY GLY H . n C 3 134 TYR 134 497 497 TYR TYR H . n C 3 135 LYS 135 498 498 LYS LYS H . n C 3 136 GLY 136 499 499 GLY GLY H . n C 3 137 ARG 137 500 500 ARG ARG H . n C 3 138 VAL 138 501 501 VAL VAL H . n C 3 139 THR 139 502 502 THR THR H . n C 3 140 GLY 140 503 503 GLY GLY H . n C 3 141 TRP 141 504 504 TRP TRP H . n C 3 142 GLY 142 505 505 GLY GLY H . n C 3 143 ASN 143 506 506 ASN ASN H . n C 3 144 LEU 144 507 507 LEU LEU H . n C 3 145 LYS 145 508 508 LYS LYS H . n C 3 146 GLU 146 509 509 GLU GLU H . n C 3 147 THR 147 510 510 THR THR H . n C 3 148 TRP 148 511 511 TRP TRP H . n C 3 149 THR 149 512 512 THR THR H . n C 3 150 ALA 150 513 513 ALA ALA H . n C 3 151 ASN 151 514 514 ASN ASN H . n C 3 152 VAL 152 515 515 VAL VAL H . n C 3 153 GLY 153 516 516 GLY GLY H . n C 3 154 LYS 154 517 517 LYS LYS H . n C 3 155 GLY 155 518 518 GLY GLY H . n C 3 156 GLN 156 519 519 GLN GLN H . n C 3 157 PRO 157 520 520 PRO PRO H . n C 3 158 SER 158 521 521 SER SER H . n C 3 159 VAL 159 522 522 VAL VAL H . n C 3 160 LEU 160 523 523 LEU LEU H . n C 3 161 GLN 161 524 524 GLN GLN H . n C 3 162 VAL 162 525 525 VAL VAL H . n C 3 163 VAL 163 526 526 VAL VAL H . n C 3 164 ASN 164 527 527 ASN ASN H . n C 3 165 LEU 165 528 528 LEU LEU H . n C 3 166 PRO 166 529 529 PRO PRO H . n C 3 167 ILE 167 530 530 ILE ILE H . n C 3 168 VAL 168 531 531 VAL VAL H . n C 3 169 GLU 169 532 532 GLU GLU H . n C 3 170 ARG 170 533 533 ARG ARG H . n C 3 171 PRO 171 534 534 PRO PRO H . n C 3 172 VAL 172 535 535 VAL VAL H . n C 3 173 CYS 173 536 536 CYS CYS H . n C 3 174 LYS 174 537 537 LYS LYS H . n C 3 175 ASP 175 538 538 ASP ASP H . n C 3 176 SER 176 539 539 SER SER H . n C 3 177 THR 177 540 540 THR THR H . n C 3 178 ARG 178 541 541 ARG ARG H . n C 3 179 ILE 179 542 542 ILE ILE H . n C 3 180 ARG 180 543 543 ARG ARG H . n C 3 181 ILE 181 544 544 ILE ILE H . n C 3 182 THR 182 545 545 THR THR H . n C 3 183 ASP 183 546 546 ASP ASP H . n C 3 184 ASN 184 547 547 ASN ASN H . n C 3 185 MET 185 548 548 MET MET H . n C 3 186 PHE 186 549 549 PHE PHE H . n C 3 187 CYS 187 550 550 CYS CYS H . n C 3 188 ALA 188 551 551 ALA ALA H . n C 3 189 GLY 189 552 552 GLY GLY H . n C 3 190 TYR 190 553 553 TYR TYR H . n C 3 191 LYS 191 554 554 LYS LYS H . n C 3 192 PRO 192 555 555 PRO PRO H . n C 3 193 ASP 193 556 556 ASP ASP H . n C 3 194 GLU 194 557 557 GLU GLU H . n C 3 195 GLY 195 558 558 GLY GLY H . n C 3 196 LYS 196 559 559 LYS LYS H . n C 3 197 ARG 197 560 560 ARG ARG H . n C 3 198 GLY 198 561 561 GLY GLY H . n C 3 199 ASP 199 562 562 ASP ASP H . n C 3 200 ALA 200 563 563 ALA ALA H . n C 3 201 CYS 201 564 564 CYS CYS H . n C 3 202 GLU 202 565 565 GLU GLU H . n C 3 203 GLY 203 566 566 GLY GLY H . n C 3 204 ASP 204 567 567 ASP ASP H . n C 3 205 SER 205 568 568 SER SER H . n C 3 206 GLY 206 569 569 GLY GLY H . n C 3 207 GLY 207 570 570 GLY GLY H . n C 3 208 PRO 208 571 571 PRO PRO H . n C 3 209 PHE 209 572 572 PHE PHE H . n C 3 210 VAL 210 573 573 VAL VAL H . n C 3 211 MET 211 574 574 MET MET H . n C 3 212 LYS 212 575 575 LYS LYS H . n C 3 213 SER 213 576 576 SER SER H . n C 3 214 PRO 214 577 577 PRO PRO H . n C 3 215 PHE 215 578 578 PHE PHE H . n C 3 216 ASN 216 579 579 ASN ASN H . n C 3 217 ASN 217 580 580 ASN ASN H . n C 3 218 ARG 218 581 581 ARG ARG H . n C 3 219 TRP 219 582 582 TRP TRP H . n C 3 220 TYR 220 583 583 TYR TYR H . n C 3 221 GLN 221 584 584 GLN GLN H . n C 3 222 MET 222 585 585 MET MET H . n C 3 223 GLY 223 586 586 GLY GLY H . n C 3 224 ILE 224 587 587 ILE ILE H . n C 3 225 VAL 225 588 588 VAL VAL H . n C 3 226 SER 226 589 589 SER SER H . n C 3 227 TRP 227 590 590 TRP TRP H . n C 3 228 GLY 228 591 591 GLY GLY H . n C 3 229 GLU 229 592 592 GLU GLU H . n C 3 230 GLY 230 593 593 GLY GLY H . n C 3 231 CYS 231 594 594 CYS CYS H . n C 3 232 ASP 232 595 595 ASP ASP H . n C 3 233 ARG 233 596 596 ARG ARG H . n C 3 234 ASP 234 597 597 ASP ASP H . n C 3 235 GLY 235 598 598 GLY GLY H . n C 3 236 LYS 236 599 599 LYS LYS H . n C 3 237 TYR 237 600 600 TYR TYR H . n C 3 238 GLY 238 601 601 GLY GLY H . n C 3 239 PHE 239 602 602 PHE PHE H . n C 3 240 TYR 240 603 603 TYR TYR H . n C 3 241 THR 241 604 604 THR THR H . n C 3 242 HIS 242 605 605 HIS HIS H . n C 3 243 VAL 243 606 606 VAL VAL H . n C 3 244 PHE 244 607 607 PHE PHE H . n C 3 245 ARG 245 608 608 ARG ARG H . n C 3 246 LEU 246 609 609 LEU LEU H . n C 3 247 LYS 247 610 610 LYS LYS H . n C 3 248 LYS 248 611 611 LYS LYS H . n C 3 249 TRP 249 612 612 TRP TRP H . n C 3 250 ILE 250 613 613 ILE ILE H . n C 3 251 GLN 251 614 614 GLN GLN H . n C 3 252 LYS 252 615 615 LYS LYS H . n C 3 253 VAL 253 616 616 VAL VAL H . n C 3 254 ILE 254 617 617 ILE ILE H . n C 3 255 ASP 255 618 618 ASP ASP H . n C 3 256 GLN 256 619 619 GLN GLN H . n C 3 257 PHE 257 620 620 PHE PHE H . n C 3 258 GLY 258 621 621 GLY GLY H . n C 3 259 GLU 259 622 622 GLU GLU H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 K 1 501 1 K K D . E 5 0G6 1 701 297 0G6 0G6 H . F 6 NA 1 702 1 NA NA H . G 7 NAG 1 703 1 NAG NAG H . H 8 HOH 1 601 225 HOH HOH D . H 8 HOH 2 602 202 HOH HOH D . H 8 HOH 3 603 50 HOH HOH D . H 8 HOH 4 604 35 HOH HOH D . H 8 HOH 5 605 75 HOH HOH D . H 8 HOH 6 606 46 HOH HOH D . H 8 HOH 7 607 32 HOH HOH D . H 8 HOH 8 608 23 HOH HOH D . H 8 HOH 9 609 56 HOH HOH D . H 8 HOH 10 610 55 HOH HOH D . H 8 HOH 11 611 60 HOH HOH D . H 8 HOH 12 612 58 HOH HOH D . H 8 HOH 13 613 194 HOH HOH D . H 8 HOH 14 614 54 HOH HOH D . H 8 HOH 15 615 48 HOH HOH D . H 8 HOH 16 616 148 HOH HOH D . H 8 HOH 17 617 47 HOH HOH D . H 8 HOH 18 618 59 HOH HOH D . H 8 HOH 19 619 160 HOH HOH D . H 8 HOH 20 620 193 HOH HOH D . H 8 HOH 21 621 73 HOH HOH D . H 8 HOH 22 622 52 HOH HOH D . H 8 HOH 23 623 149 HOH HOH D . H 8 HOH 24 624 72 HOH HOH D . H 8 HOH 25 625 57 HOH HOH D . H 8 HOH 26 626 74 HOH HOH D . H 8 HOH 27 627 133 HOH HOH D . H 8 HOH 28 628 201 HOH HOH D . H 8 HOH 29 629 195 HOH HOH D . H 8 HOH 30 630 61 HOH HOH D . I 8 HOH 1 401 184 HOH HOH L . I 8 HOH 2 402 91 HOH HOH L . I 8 HOH 3 403 41 HOH HOH L . I 8 HOH 4 404 92 HOH HOH L . I 8 HOH 5 405 86 HOH HOH L . I 8 HOH 6 406 71 HOH HOH L . I 8 HOH 7 407 77 HOH HOH L . I 8 HOH 8 408 88 HOH HOH L . I 8 HOH 9 409 84 HOH HOH L . I 8 HOH 10 410 80 HOH HOH L . I 8 HOH 11 411 95 HOH HOH L . I 8 HOH 12 412 63 HOH HOH L . I 8 HOH 13 413 90 HOH HOH L . I 8 HOH 14 414 208 HOH HOH L . I 8 HOH 15 415 64 HOH HOH L . I 8 HOH 16 416 81 HOH HOH L . I 8 HOH 17 417 62 HOH HOH L . I 8 HOH 18 418 65 HOH HOH L . J 8 HOH 1 801 152 HOH HOH H . J 8 HOH 2 802 110 HOH HOH H . J 8 HOH 3 803 191 HOH HOH H . J 8 HOH 4 804 98 HOH HOH H . J 8 HOH 5 805 130 HOH HOH H . J 8 HOH 6 806 229 HOH HOH H . J 8 HOH 7 807 190 HOH HOH H . J 8 HOH 8 808 207 HOH HOH H . J 8 HOH 9 809 187 HOH HOH H . J 8 HOH 10 810 4 HOH HOH H . J 8 HOH 11 811 3 HOH HOH H . J 8 HOH 12 812 22 HOH HOH H . J 8 HOH 13 813 6 HOH HOH H . J 8 HOH 14 814 104 HOH HOH H . J 8 HOH 15 815 102 HOH HOH H . J 8 HOH 16 816 131 HOH HOH H . J 8 HOH 17 817 49 HOH HOH H . J 8 HOH 18 818 11 HOH HOH H . J 8 HOH 19 819 17 HOH HOH H . J 8 HOH 20 820 106 HOH HOH H . J 8 HOH 21 821 111 HOH HOH H . J 8 HOH 22 822 150 HOH HOH H . J 8 HOH 23 823 30 HOH HOH H . J 8 HOH 24 824 36 HOH HOH H . J 8 HOH 25 825 206 HOH HOH H . J 8 HOH 26 826 214 HOH HOH H . J 8 HOH 27 827 232 HOH HOH H . J 8 HOH 28 828 29 HOH HOH H . J 8 HOH 29 829 12 HOH HOH H . J 8 HOH 30 830 28 HOH HOH H . J 8 HOH 31 831 10 HOH HOH H . J 8 HOH 32 832 186 HOH HOH H . J 8 HOH 33 833 19 HOH HOH H . J 8 HOH 34 834 120 HOH HOH H . J 8 HOH 35 835 162 HOH HOH H . J 8 HOH 36 836 27 HOH HOH H . J 8 HOH 37 837 40 HOH HOH H . J 8 HOH 38 838 182 HOH HOH H . J 8 HOH 39 839 147 HOH HOH H . J 8 HOH 40 840 2 HOH HOH H . J 8 HOH 41 841 151 HOH HOH H . J 8 HOH 42 842 33 HOH HOH H . J 8 HOH 43 843 85 HOH HOH H . J 8 HOH 44 844 103 HOH HOH H . J 8 HOH 45 845 192 HOH HOH H . J 8 HOH 46 846 99 HOH HOH H . J 8 HOH 47 847 31 HOH HOH H . J 8 HOH 48 848 205 HOH HOH H . J 8 HOH 49 849 127 HOH HOH H . J 8 HOH 50 850 39 HOH HOH H . J 8 HOH 51 851 9 HOH HOH H . J 8 HOH 52 852 121 HOH HOH H . J 8 HOH 53 853 115 HOH HOH H . J 8 HOH 54 854 15 HOH HOH H . J 8 HOH 55 855 16 HOH HOH H . J 8 HOH 56 856 143 HOH HOH H . J 8 HOH 57 857 97 HOH HOH H . J 8 HOH 58 858 24 HOH HOH H . J 8 HOH 59 859 139 HOH HOH H . J 8 HOH 60 860 25 HOH HOH H . J 8 HOH 61 861 51 HOH HOH H . J 8 HOH 62 862 69 HOH HOH H . J 8 HOH 63 863 178 HOH HOH H . J 8 HOH 64 864 168 HOH HOH H . J 8 HOH 65 865 189 HOH HOH H . J 8 HOH 66 866 26 HOH HOH H . J 8 HOH 67 867 118 HOH HOH H . J 8 HOH 68 868 171 HOH HOH H . J 8 HOH 69 869 169 HOH HOH H . J 8 HOH 70 870 38 HOH HOH H . J 8 HOH 71 871 222 HOH HOH H . J 8 HOH 72 872 20 HOH HOH H . J 8 HOH 73 873 7 HOH HOH H . J 8 HOH 74 874 197 HOH HOH H . J 8 HOH 75 875 94 HOH HOH H . J 8 HOH 76 876 67 HOH HOH H . J 8 HOH 77 877 5 HOH HOH H . J 8 HOH 78 878 140 HOH HOH H . J 8 HOH 79 879 142 HOH HOH H . J 8 HOH 80 880 34 HOH HOH H . J 8 HOH 81 881 13 HOH HOH H . J 8 HOH 82 882 21 HOH HOH H . J 8 HOH 83 883 181 HOH HOH H . J 8 HOH 84 884 176 HOH HOH H . J 8 HOH 85 885 44 HOH HOH H . J 8 HOH 86 886 188 HOH HOH H . J 8 HOH 87 887 183 HOH HOH H . J 8 HOH 88 888 158 HOH HOH H . J 8 HOH 89 889 93 HOH HOH H . J 8 HOH 90 890 8 HOH HOH H . J 8 HOH 91 891 156 HOH HOH H . J 8 HOH 92 892 89 HOH HOH H . J 8 HOH 93 893 166 HOH HOH H . J 8 HOH 94 894 159 HOH HOH H . J 8 HOH 95 895 68 HOH HOH H . J 8 HOH 96 896 14 HOH HOH H . J 8 HOH 97 897 164 HOH HOH H . J 8 HOH 98 898 1 HOH HOH H . J 8 HOH 99 899 37 HOH HOH H . J 8 HOH 100 900 173 HOH HOH H . J 8 HOH 101 901 165 HOH HOH H . J 8 HOH 102 902 83 HOH HOH H . J 8 HOH 103 903 116 HOH HOH H . J 8 HOH 104 904 114 HOH HOH H . J 8 HOH 105 905 132 HOH HOH H . J 8 HOH 106 906 108 HOH HOH H . J 8 HOH 107 907 112 HOH HOH H . J 8 HOH 108 908 70 HOH HOH H . J 8 HOH 109 909 227 HOH HOH H . J 8 HOH 110 910 144 HOH HOH H . J 8 HOH 111 911 221 HOH HOH H . J 8 HOH 112 912 155 HOH HOH H . J 8 HOH 113 913 105 HOH HOH H . J 8 HOH 114 914 161 HOH HOH H . J 8 HOH 115 915 138 HOH HOH H . J 8 HOH 116 916 211 HOH HOH H . J 8 HOH 117 917 198 HOH HOH H . J 8 HOH 118 918 45 HOH HOH H . J 8 HOH 119 919 18 HOH HOH H . J 8 HOH 120 920 100 HOH HOH H . J 8 HOH 121 921 185 HOH HOH H . J 8 HOH 122 922 137 HOH HOH H . J 8 HOH 123 923 170 HOH HOH H . J 8 HOH 124 924 117 HOH HOH H . J 8 HOH 125 925 146 HOH HOH H . J 8 HOH 126 926 42 HOH HOH H . J 8 HOH 127 927 134 HOH HOH H . J 8 HOH 128 928 135 HOH HOH H . J 8 HOH 129 929 78 HOH HOH H . J 8 HOH 130 930 204 HOH HOH H . J 8 HOH 131 931 175 HOH HOH H . J 8 HOH 132 932 136 HOH HOH H . J 8 HOH 133 933 119 HOH HOH H . J 8 HOH 134 934 163 HOH HOH H . J 8 HOH 135 935 179 HOH HOH H . J 8 HOH 136 936 153 HOH HOH H . J 8 HOH 137 937 109 HOH HOH H . J 8 HOH 138 938 123 HOH HOH H . J 8 HOH 139 939 213 HOH HOH H . J 8 HOH 140 940 196 HOH HOH H . J 8 HOH 141 941 124 HOH HOH H . J 8 HOH 142 942 174 HOH HOH H . J 8 HOH 143 943 141 HOH HOH H . J 8 HOH 144 944 101 HOH HOH H . J 8 HOH 145 945 220 HOH HOH H . J 8 HOH 146 946 230 HOH HOH H . J 8 HOH 147 947 228 HOH HOH H . J 8 HOH 148 948 226 HOH HOH H . J 8 HOH 149 949 113 HOH HOH H . J 8 HOH 150 950 210 HOH HOH H . J 8 HOH 151 951 107 HOH HOH H . J 8 HOH 152 952 125 HOH HOH H . J 8 HOH 153 953 215 HOH HOH H . J 8 HOH 154 954 177 HOH HOH H . J 8 HOH 155 955 218 HOH HOH H . J 8 HOH 156 956 209 HOH HOH H . J 8 HOH 157 957 219 HOH HOH H . J 8 HOH 158 958 43 HOH HOH H . J 8 HOH 159 959 79 HOH HOH H . J 8 HOH 160 960 122 HOH HOH H . J 8 HOH 161 961 167 HOH HOH H . J 8 HOH 162 962 217 HOH HOH H . J 8 HOH 163 963 154 HOH HOH H . J 8 HOH 164 964 76 HOH HOH H . J 8 HOH 165 965 145 HOH HOH H . J 8 HOH 166 966 212 HOH HOH H . J 8 HOH 167 967 82 HOH HOH H . J 8 HOH 168 968 180 HOH HOH H . J 8 HOH 169 969 157 HOH HOH H . J 8 HOH 170 970 224 HOH HOH H . J 8 HOH 171 971 96 HOH HOH H . J 8 HOH 172 972 66 HOH HOH H . J 8 HOH 173 973 172 HOH HOH H . J 8 HOH 174 974 231 HOH HOH H . J 8 HOH 175 975 200 HOH HOH H . J 8 HOH 176 976 203 HOH HOH H . J 8 HOH 177 977 128 HOH HOH H . J 8 HOH 178 978 129 HOH HOH H . J 8 HOH 179 979 53 HOH HOH H . J 8 HOH 180 980 87 HOH HOH H . J 8 HOH 181 981 199 HOH HOH H . J 8 HOH 182 982 126 HOH HOH H . J 8 HOH 183 983 216 HOH HOH H . J 8 HOH 184 984 223 HOH HOH H . # _pdbx_molecule_features.prd_id PRD_000020 _pdbx_molecule_features.name D-Phe-Pro-Arg-CH2Cl _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000020 _pdbx_molecule.asym_id E # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4060 ? 1 MORE -24 ? 1 'SSA (A^2)' 15150 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 1 ? D DG 401 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 2 ? D DG 402 ? 1_555 66.1 ? 2 O6 ? A DG 1 ? D DG 401 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 5 ? D DG 405 ? 1_555 123.9 ? 3 O6 ? A DG 2 ? D DG 402 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 5 ? D DG 405 ? 1_555 74.7 ? 4 O6 ? A DG 1 ? D DG 401 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 6 ? D DG 406 ? 1_555 73.1 ? 5 O6 ? A DG 2 ? D DG 402 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 6 ? D DG 406 ? 1_555 98.0 ? 6 O6 ? A DG 5 ? D DG 405 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 6 ? D DG 406 ? 1_555 74.6 ? 7 O6 ? A DG 1 ? D DG 401 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 10 ? D DG 410 ? 1_555 115.1 ? 8 O6 ? A DG 2 ? D DG 402 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 10 ? D DG 410 ? 1_555 167.8 ? 9 O6 ? A DG 5 ? D DG 405 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 10 ? D DG 410 ? 1_555 95.9 ? 10 O6 ? A DG 6 ? D DG 406 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 10 ? D DG 410 ? 1_555 71.6 ? 11 O6 ? A DG 1 ? D DG 401 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 11 ? D DG 411 ? 1_555 169.0 ? 12 O6 ? A DG 2 ? D DG 402 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 11 ? D DG 411 ? 1_555 112.7 ? 13 O6 ? A DG 5 ? D DG 405 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 11 ? D DG 411 ? 1_555 64.3 ? 14 O6 ? A DG 6 ? D DG 406 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 11 ? D DG 411 ? 1_555 117.6 ? 15 O6 ? A DG 10 ? D DG 410 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 11 ? D DG 411 ? 1_555 68.6 ? 16 O6 ? A DG 1 ? D DG 401 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 14 ? D DG 414 ? 1_555 97.8 ? 17 O6 ? A DG 2 ? D DG 402 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 14 ? D DG 414 ? 1_555 71.3 ? 18 O6 ? A DG 5 ? D DG 405 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 14 ? D DG 414 ? 1_555 106.0 ? 19 O6 ? A DG 6 ? D DG 406 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 14 ? D DG 414 ? 1_555 168.3 ? 20 O6 ? A DG 10 ? D DG 410 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 14 ? D DG 414 ? 1_555 119.5 ? 21 O6 ? A DG 11 ? D DG 411 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 14 ? D DG 414 ? 1_555 72.0 ? 22 O6 ? A DG 1 ? D DG 401 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 15 ? D DG 415 ? 1_555 72.2 ? 23 O6 ? A DG 2 ? D DG 402 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 15 ? D DG 415 ? 1_555 119.5 ? 24 O6 ? A DG 5 ? D DG 405 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 15 ? D DG 415 ? 1_555 163.3 ? 25 O6 ? A DG 6 ? D DG 406 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 15 ? D DG 415 ? 1_555 109.6 ? 26 O6 ? A DG 10 ? D DG 410 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 15 ? D DG 415 ? 1_555 71.1 ? 27 O6 ? A DG 11 ? D DG 411 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 15 ? D DG 415 ? 1_555 100.4 ? 28 O6 ? A DG 14 ? D DG 414 ? 1_555 K ? D K . ? D K 501 ? 1_555 O6 ? A DG 15 ? D DG 415 ? 1_555 73.3 ? 29 O ? C ARG 233 ? H ARG 596 ? 1_555 NA ? F NA . ? H NA 702 ? 1_555 O ? C LYS 236 ? H LYS 599 ? 1_555 91.0 ? 30 O ? C ARG 233 ? H ARG 596 ? 1_555 NA ? F NA . ? H NA 702 ? 1_555 O ? J HOH . ? H HOH 824 ? 1_555 102.1 ? 31 O ? C LYS 236 ? H LYS 599 ? 1_555 NA ? F NA . ? H NA 702 ? 1_555 O ? J HOH . ? H HOH 824 ? 1_555 165.7 ? 32 O ? C ARG 233 ? H ARG 596 ? 1_555 NA ? F NA . ? H NA 702 ? 1_555 O ? J HOH . ? H HOH 854 ? 1_555 88.0 ? 33 O ? C LYS 236 ? H LYS 599 ? 1_555 NA ? F NA . ? H NA 702 ? 1_555 O ? J HOH . ? H HOH 854 ? 1_555 93.0 ? 34 O ? J HOH . ? H HOH 824 ? 1_555 NA ? F NA . ? H NA 702 ? 1_555 O ? J HOH . ? H HOH 854 ? 1_555 93.1 ? 35 O ? C ARG 233 ? H ARG 596 ? 1_555 NA ? F NA . ? H NA 702 ? 1_555 O ? J HOH . ? H HOH 918 ? 1_555 93.9 ? 36 O ? C LYS 236 ? H LYS 599 ? 1_555 NA ? F NA . ? H NA 702 ? 1_555 O ? J HOH . ? H HOH 918 ? 1_555 79.3 ? 37 O ? J HOH . ? H HOH 824 ? 1_555 NA ? F NA . ? H NA 702 ? 1_555 O ? J HOH . ? H HOH 918 ? 1_555 94.0 ? 38 O ? J HOH . ? H HOH 854 ? 1_555 NA ? F NA . ? H NA 702 ? 1_555 O ? J HOH . ? H HOH 918 ? 1_555 172.1 ? 39 O ? C ARG 233 ? H ARG 596 ? 1_555 NA ? F NA . ? H NA 702 ? 1_555 O ? J HOH . ? H HOH 842 ? 1_555 158.0 ? 40 O ? C LYS 236 ? H LYS 599 ? 1_555 NA ? F NA . ? H NA 702 ? 1_555 O ? J HOH . ? H HOH 842 ? 1_555 69.5 ? 41 O ? J HOH . ? H HOH 824 ? 1_555 NA ? F NA . ? H NA 702 ? 1_555 O ? J HOH . ? H HOH 842 ? 1_555 98.4 ? 42 O ? J HOH . ? H HOH 854 ? 1_555 NA ? F NA . ? H NA 702 ? 1_555 O ? J HOH . ? H HOH 842 ? 1_555 83.0 ? 43 O ? J HOH . ? H HOH 918 ? 1_555 NA ? F NA . ? H NA 702 ? 1_555 O ? J HOH . ? H HOH 842 ? 1_555 92.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-09-21 2 'Structure model' 1 1 2016-12-21 3 'Structure model' 1 2 2017-10-18 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 3 'Structure model' Advisory 3 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_database_PDB_obs_spr 2 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_database_status.status_code' 2 3 'Structure model' '_pdbx_database_status.status_code_sf' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0155 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.25 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? 11.4.05 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG H SER 568 ? ? C2 H 0G6 701 ? ? 1.73 2 1 O L GLU 333 ? ? O L HOH 401 ? ? 1.79 3 1 CE1 H HIS 406 ? ? C3 H 0G6 701 ? ? 1.83 4 1 CG H ASN 416 ? ? O5 H NAG 703 ? ? 2.12 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" D 8DT 404 ? ? P D DG 405 ? ? 1.498 1.607 -0.109 0.012 Y 2 1 CB H SER 375 ? ? OG H SER 375 ? ? 1.340 1.418 -0.078 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" D DT 403 ? ? "O3'" D DT 403 ? ? P D 8DT 404 ? ? 129.97 119.70 10.27 1.20 Y 2 1 "O3'" D DT 403 ? ? P D 8DT 404 ? ? OP1 D 8DT 404 ? ? 128.18 110.50 17.68 1.10 Y 3 1 "C3'" D 8DT 404 ? ? "O3'" D 8DT 404 ? ? P D DG 405 ? ? 131.13 119.70 11.43 1.20 Y 4 1 "O5'" D DG 410 ? ? P D DG 410 ? ? OP1 D DG 410 ? ? 100.29 105.70 -5.41 0.90 N 5 1 NE H ARG 399 ? A CZ H ARG 399 ? A NH2 H ARG 399 ? A 115.98 120.30 -4.32 0.50 N 6 1 NE H ARG 436 ? ? CZ H ARG 436 ? ? NH1 H ARG 436 ? ? 124.07 120.30 3.77 0.50 N 7 1 NE H ARG 436 ? ? CZ H ARG 436 ? ? NH2 H ARG 436 ? ? 117.18 120.30 -3.12 0.50 N 8 1 NE H ARG 461 ? ? CZ H ARG 461 ? ? NH1 H ARG 461 ? ? 126.09 120.30 5.79 0.50 N 9 1 NE H ARG 461 ? ? CZ H ARG 461 ? ? NH2 H ARG 461 ? ? 115.91 120.30 -4.39 0.50 N 10 1 CG H MET 574 ? ? SD H MET 574 ? ? CE H MET 574 ? ? 90.47 100.20 -9.73 1.60 N 11 1 NE H ARG 581 ? ? CZ H ARG 581 ? ? NH1 H ARG 581 ? ? 125.05 120.30 4.75 0.50 N 12 1 NE H ARG 581 ? ? CZ H ARG 581 ? ? NH2 H ARG 581 ? ? 117.03 120.30 -3.27 0.50 N 13 1 NE H ARG 608 ? ? CZ H ARG 608 ? ? NH1 H ARG 608 ? ? 125.12 120.30 4.82 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU L 333 ? ? -168.04 -76.48 2 1 ALA L 334 ? ? -109.45 75.92 3 1 PHE L 342 ? ? -129.69 -90.04 4 1 ILE L 360 ? ? -83.59 -74.98 5 1 TYR H 410 ? ? -151.98 89.31 6 1 ASN H 416 ? ? -155.13 77.55 7 1 HIS H 429 ? ? -129.66 -60.09 8 1 GLU H 457 ? ? -99.60 -73.09 9 1 ALA H 513 ? ? 60.68 -52.86 10 1 GLU H 557 ? ? -59.84 -9.99 11 1 PHE H 620 ? ? -97.99 32.55 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id C1 _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id H _pdbx_validate_chiral.auth_comp_id NAG _pdbx_validate_chiral.auth_seq_id 703 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id L _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 418 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 6.93 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag N _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id H _pdbx_unobs_or_zero_occ_atoms.auth_comp_id 0G6 _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 701 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id CL _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id E _pdbx_unobs_or_zero_occ_atoms.label_comp_id 0G6 _pdbx_unobs_or_zero_occ_atoms.label_seq_id 1 _pdbx_unobs_or_zero_occ_atoms.label_atom_id CL # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 L THR 328 ? B THR 1 2 1 Y 1 L PHE 329 ? B PHE 2 3 1 Y 1 L GLY 330 ? B GLY 3 4 1 Y 1 L SER 331 ? B SER 4 5 1 Y 1 L GLY 362 ? B GLY 35 6 1 Y 1 L ARG 363 ? B ARG 36 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5LUY 'double helix' 5LUY 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 10 1_555 A DG 15 1_555 1.622 3.247 0.321 -14.197 -0.011 -91.665 1 D_DG410:DG415_D D 410 ? D 415 ? 6 3 1 A DG 11 1_555 A DG 14 1_555 -1.682 -3.464 -0.171 7.519 12.115 89.641 2 D_DG411:DG414_D D 411 ? D 414 ? 6 3 # _ndb_struct_na_base_pair_step.model_number 1 _ndb_struct_na_base_pair_step.i_label_asym_id_1 A _ndb_struct_na_base_pair_step.i_label_comp_id_1 DG _ndb_struct_na_base_pair_step.i_label_seq_id_1 10 _ndb_struct_na_base_pair_step.i_symmetry_1 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_1 A _ndb_struct_na_base_pair_step.j_label_comp_id_1 DG _ndb_struct_na_base_pair_step.j_label_seq_id_1 15 _ndb_struct_na_base_pair_step.j_symmetry_1 1_555 _ndb_struct_na_base_pair_step.i_label_asym_id_2 A _ndb_struct_na_base_pair_step.i_label_comp_id_2 DG _ndb_struct_na_base_pair_step.i_label_seq_id_2 11 _ndb_struct_na_base_pair_step.i_symmetry_2 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_2 A _ndb_struct_na_base_pair_step.j_label_comp_id_2 DG _ndb_struct_na_base_pair_step.j_label_seq_id_2 14 _ndb_struct_na_base_pair_step.j_symmetry_2 1_555 _ndb_struct_na_base_pair_step.shift -1.189 _ndb_struct_na_base_pair_step.slide -3.667 _ndb_struct_na_base_pair_step.rise 0.226 _ndb_struct_na_base_pair_step.tilt 82.548 _ndb_struct_na_base_pair_step.roll -146.808 _ndb_struct_na_base_pair_step.twist 176.222 _ndb_struct_na_base_pair_step.x_displacement -1.830 _ndb_struct_na_base_pair_step.y_displacement 0.597 _ndb_struct_na_base_pair_step.helical_rise 0.311 _ndb_struct_na_base_pair_step.inclination -73.407 _ndb_struct_na_base_pair_step.tip -41.276 _ndb_struct_na_base_pair_step.helical_twist 179.619 _ndb_struct_na_base_pair_step.step_number 1 _ndb_struct_na_base_pair_step.step_name DD_DG410DG411:DG414DG415_DD _ndb_struct_na_base_pair_step.i_auth_asym_id_1 D _ndb_struct_na_base_pair_step.i_auth_seq_id_1 410 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_1 D _ndb_struct_na_base_pair_step.j_auth_seq_id_1 415 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.i_auth_asym_id_2 D _ndb_struct_na_base_pair_step.i_auth_seq_id_2 411 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_2 D _ndb_struct_na_base_pair_step.j_auth_seq_id_2 414 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'POTASSIUM ION' K 5 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' 0G6 6 'SODIUM ION' NA 7 N-ACETYL-D-GLUCOSAMINE NAG 8 water HOH #