HEADER TRANSFERASE 12-SEP-16 5LV5 TITLE CRYSTAL STRUCTURE OF MOUSE PRMT6 IN COMPLEX WITH INHIBITOR LH1458 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARGININE N-METHYLTRANSFERASE 6; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HISTONE-ARGININE N-METHYLTRANSFERASE PRMT6; COMPND 5 EC: 2.1.1.319; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRMT6, HRMT1L6; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, S-ADENOSYL-L-METHIONINE EXPDTA X-RAY DIFFRACTION AUTHOR V.CURA,N.MARECHAL,N.TROFFER-CHARLIER,L.HALBY,P.ARIMONDO,L.BONNEFOND, AUTHOR 2 J.CAVARELLI REVDAT 3 17-JAN-24 5LV5 1 REMARK REVDAT 2 02-MAY-18 5LV5 1 JRNL REVDAT 1 20-SEP-17 5LV5 0 JRNL AUTH L.HALBY,N.MARECHAL,D.PECHALRIEU,V.CURA,D.M.FRANCHINI,C.FAUX, JRNL AUTH 2 F.ALBY,N.TROFFER-CHARLIER,S.KUDITHIPUDI,A.JELTSCH,W.AOUADI, JRNL AUTH 3 E.DECROLY,J.C.GUILLEMOT,P.PAGE,C.FERROUD,L.BONNEFOND, JRNL AUTH 4 D.GUIANVARC'H,J.CAVARELLI,P.B.ARIMONDO JRNL TITL HIJACKING DNA METHYLTRANSFERASE TRANSITION STATE ANALOGUES JRNL TITL 2 TO PRODUCE CHEMICAL SCAFFOLDS FOR PRMT INHIBITORS. JRNL REF PHILOS. TRANS. R. SOC. V. 373 2018 JRNL REF 2 LOND., B, BIOL. SCI. JRNL REFN ESSN 1471-2970 JRNL PMID 29685976 JRNL DOI 10.1098/RSTB.2017.0072 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11RC1_2513: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 32094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1700 - 4.0075 1.00 2813 149 0.1423 0.1860 REMARK 3 2 4.0075 - 3.1813 1.00 2780 147 0.1366 0.1710 REMARK 3 3 3.1813 - 2.7793 1.00 2758 147 0.1576 0.1907 REMARK 3 4 2.7793 - 2.5252 1.00 2784 145 0.1481 0.1887 REMARK 3 5 2.5252 - 2.3442 1.00 2787 141 0.1456 0.1846 REMARK 3 6 2.3442 - 2.2060 1.00 2773 146 0.1449 0.1858 REMARK 3 7 2.2060 - 2.0955 1.00 2743 150 0.1512 0.2115 REMARK 3 8 2.0955 - 2.0043 1.00 2768 147 0.1643 0.2165 REMARK 3 9 2.0043 - 1.9272 1.00 2784 141 0.1812 0.2304 REMARK 3 10 1.9272 - 1.8607 1.00 2776 147 0.2247 0.2302 REMARK 3 11 1.8607 - 1.8025 0.98 2721 147 0.2759 0.3404 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2633 REMARK 3 ANGLE : 1.060 3577 REMARK 3 CHIRALITY : 0.080 395 REMARK 3 PLANARITY : 0.007 481 REMARK 3 DIHEDRAL : 16.592 986 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 190 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3788 -14.2425 5.3231 REMARK 3 T TENSOR REMARK 3 T11: 0.0384 T22: 0.0773 REMARK 3 T33: 0.0695 T12: 0.0046 REMARK 3 T13: 0.0207 T23: -0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.0468 L22: 0.8798 REMARK 3 L33: 0.8650 L12: -0.2152 REMARK 3 L13: 0.5225 L23: -0.0814 REMARK 3 S TENSOR REMARK 3 S11: 0.0526 S12: 0.0916 S13: -0.0883 REMARK 3 S21: -0.0051 S22: -0.0761 S23: 0.0789 REMARK 3 S31: 0.0281 S32: -0.0389 S33: -0.0081 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 191 THROUGH 234 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3528 17.2261 13.2777 REMARK 3 T TENSOR REMARK 3 T11: 0.1201 T22: 0.2433 REMARK 3 T33: 0.1701 T12: -0.0046 REMARK 3 T13: -0.0040 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.2168 L22: -0.1002 REMARK 3 L33: -0.1162 L12: 0.0826 REMARK 3 L13: -0.0380 L23: 0.1037 REMARK 3 S TENSOR REMARK 3 S11: 0.0719 S12: 0.0816 S13: -0.0359 REMARK 3 S21: 0.0545 S22: 0.0253 S23: 0.0377 REMARK 3 S31: 0.0459 S32: 0.0250 S33: 0.0021 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 235 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.9021 12.3089 8.7829 REMARK 3 T TENSOR REMARK 3 T11: 0.1181 T22: 0.1484 REMARK 3 T33: 0.1251 T12: 0.0011 REMARK 3 T13: 0.0030 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.4603 L22: 1.5871 REMARK 3 L33: 0.9102 L12: 0.0032 REMARK 3 L13: -0.0908 L23: -0.0026 REMARK 3 S TENSOR REMARK 3 S11: 0.0525 S12: -0.0021 S13: 0.0597 REMARK 3 S21: -0.0191 S22: -0.0336 S23: 0.0123 REMARK 3 S31: -0.0824 S32: 0.0030 S33: -0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LV5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200000965. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32113 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 1.26100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4C07 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL PH 8.0 100 MM PEG 6000 10 % REMARK 280 MGCL2 200 MM, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.85150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 38.85150 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.84600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.85150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.42300 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.85150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.26900 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 38.85150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.85150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.84600 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 38.85150 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 88.26900 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 38.85150 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 29.42300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 77.70300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -24 REMARK 465 GLY A -23 REMARK 465 SER A -22 REMARK 465 SER A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 THR A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 LEU A 9 REMARK 465 GLU A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 ASP A 13 REMARK 465 SER A 14 REMARK 465 GLY A 15 REMARK 465 GLY A 16 REMARK 465 ALA A 17 REMARK 465 GLY A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 GLY A 21 REMARK 465 GLU A 22 REMARK 465 GLY A 23 REMARK 465 ALA A 24 REMARK 465 GLU A 25 REMARK 465 GLU A 26 REMARK 465 GLU A 27 REMARK 465 ASN A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 30 REMARK 465 GLU A 31 REMARK 465 GLN A 32 REMARK 465 GLU A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 35 REMARK 465 PRO A 36 REMARK 465 PRO A 37 REMARK 465 ARG A 38 REMARK 465 PRO A 39 REMARK 465 ARG A 40 REMARK 465 ARG A 41 REMARK 465 THR A 42 REMARK 465 LYS A 43 REMARK 465 SER A 44 REMARK 465 GLU A 45 REMARK 465 ARG A 46 REMARK 465 ASP A 47 REMARK 465 GLN A 48 REMARK 465 LEU A 49 REMARK 465 TYR A 50 REMARK 465 TYR A 51 REMARK 465 GLU A 52 REMARK 465 CYS A 53 REMARK 465 TYR A 54 REMARK 465 SER A 55 REMARK 465 GLY A 302 REMARK 465 ASP A 303 REMARK 465 SER A 304 REMARK 465 ASP A 378 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 355 O HOH A 502 1.56 REMARK 500 O MET A 376 O HOH A 501 1.92 REMARK 500 NE ARG A 355 O HOH A 502 2.02 REMARK 500 OG SER A 171 O HOH A 503 2.04 REMARK 500 OD1 ASP A 56 O HOH A 504 2.13 REMARK 500 OG SER A 227 O HOH A 505 2.15 REMARK 500 O HOH A 650 O HOH A 696 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 650 O HOH A 693 8555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 164 -51.12 71.71 REMARK 500 GLU A 167 26.35 38.28 REMARK 500 GLU A 167 -15.17 101.25 REMARK 500 LYS A 322 -139.56 52.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78G A 401 DBREF 5LV5 A 1 378 UNP Q6NZB1 ANM6_MOUSE 1 378 SEQADV 5LV5 MET A -24 UNP Q6NZB1 INITIATING METHIONINE SEQADV 5LV5 GLY A -23 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 SER A -22 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 SER A -21 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 HIS A -20 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 HIS A -19 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 HIS A -18 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 HIS A -17 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 HIS A -16 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 HIS A -15 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 SER A -14 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 SER A -13 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 GLY A -12 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 THR A -11 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 GLY A -10 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 SER A -9 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 GLY A -8 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 GLU A -7 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 ASN A -6 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 LEU A -5 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 TYR A -4 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 PHE A -3 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 GLN A -2 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 GLY A -1 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 HIS A 0 UNP Q6NZB1 EXPRESSION TAG SEQADV 5LV5 LEU A 315 UNP Q6NZB1 PHE 315 CONFLICT SEQRES 1 A 403 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 403 THR GLY SER GLY GLU ASN LEU TYR PHE GLN GLY HIS MET SEQRES 3 A 403 SER LEU SER LYS LYS ARG LYS LEU GLU SER GLY ASP SER SEQRES 4 A 403 GLY GLY ALA GLY ALA GLY GLY GLU GLY ALA GLU GLU GLU SEQRES 5 A 403 ASN GLY GLY GLU GLN GLU ALA ALA PRO PRO ARG PRO ARG SEQRES 6 A 403 ARG THR LYS SER GLU ARG ASP GLN LEU TYR TYR GLU CYS SEQRES 7 A 403 TYR SER ASP VAL SER VAL HIS GLU GLU MET ILE ALA ASP SEQRES 8 A 403 GLN VAL ARG THR GLU ALA TYR ARG LEU GLY ILE LEU LYS SEQRES 9 A 403 ASN TRP ALA ALA LEU ARG GLY LYS THR VAL LEU ASP VAL SEQRES 10 A 403 GLY ALA GLY THR GLY ILE LEU SER ILE PHE CYS ALA GLN SEQRES 11 A 403 ALA GLY ALA ARG ARG VAL TYR ALA VAL GLU ALA SER ALA SEQRES 12 A 403 ILE TRP GLN GLN ALA ARG GLU VAL VAL ARG LEU ASN GLY SEQRES 13 A 403 LEU GLU ASP ARG VAL HIS VAL LEU PRO GLY PRO VAL GLU SEQRES 14 A 403 THR VAL GLU LEU PRO GLU ARG VAL ASP ALA ILE VAL SER SEQRES 15 A 403 GLU TRP MET GLY TYR GLY LEU LEU HIS GLU SER MET LEU SEQRES 16 A 403 SER SER VAL LEU HIS ALA ARG THR LYS TRP LEU LYS GLU SEQRES 17 A 403 GLY GLY LEU LEU LEU PRO ALA SER ALA GLU LEU PHE VAL SEQRES 18 A 403 ALA PRO ILE SER ASP GLN MET LEU GLU TRP ARG LEU GLY SEQRES 19 A 403 PHE TRP SER GLN VAL LYS GLN HIS TYR GLY VAL ASP MET SEQRES 20 A 403 SER CYS MET GLU SER PHE ALA THR ARG CYS LEU MET GLY SEQRES 21 A 403 HIS SER GLU ILE VAL VAL GLN ASP LEU SER GLY GLU ASP SEQRES 22 A 403 VAL LEU ALA ARG PRO GLN ARG PHE ALA GLN LEU GLU LEU SEQRES 23 A 403 ALA ARG ALA GLY LEU GLU GLN GLU LEU GLU ALA GLY VAL SEQRES 24 A 403 GLY GLY ARG PHE ARG CYS SER CYS TYR GLY SER ALA PRO SEQRES 25 A 403 LEU HIS GLY PHE ALA VAL TRP PHE GLN VAL THR PHE PRO SEQRES 26 A 403 GLY GLY ASP SER GLU LYS PRO LEU VAL LEU SER THR SER SEQRES 27 A 403 PRO LEU HIS PRO ALA THR HIS TRP LYS GLN ALA LEU LEU SEQRES 28 A 403 TYR LEU ASN GLU PRO VAL PRO VAL GLU GLN ASP THR ASP SEQRES 29 A 403 ILE SER GLY GLU ILE THR LEU LEU PRO SER PRO ASP ASN SEQRES 30 A 403 PRO ARG ARG LEU ARG ILE LEU LEU ARG TYR LYS VAL GLY SEQRES 31 A 403 ASP HIS GLU GLU LYS THR LYS ASP PHE ALA MET GLU ASP HET 78G A 401 72 HETNAM 78G 2-[(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3,4- HETNAM 2 78G BIS(OXIDANYL)OXOLAN-2-YL]ETHYL-[[4-AZANYL-1- HETNAM 3 78G (METHOXYMETHYL)-2-OXIDANYLIDENE-PYRIMIDIN-5- HETNAM 4 78G YL]METHYL]-[(3~{S})-3-AZANYL-4-OXIDANYL-4- HETNAM 5 78G OXIDANYLIDENE-BUTYL]AZANIUM FORMUL 2 78G C22 H33 N10 O7 1+ FORMUL 3 HOH *221(H2 O) HELIX 1 AA1 ASP A 56 ALA A 65 1 10 HELIX 2 AA2 ASP A 66 LYS A 79 1 14 HELIX 3 AA3 ASN A 80 ARG A 85 1 6 HELIX 4 AA4 GLY A 97 ALA A 106 1 10 HELIX 5 AA5 ILE A 119 ASN A 130 1 12 HELIX 6 AA6 MET A 169 TRP A 180 1 12 HELIX 7 AA7 ASP A 201 PHE A 210 1 10 HELIX 8 AA8 GLN A 213 GLY A 219 1 7 HELIX 9 AA9 SER A 223 GLY A 235 1 13 HELIX 10 AB1 SER A 245 VAL A 249 5 5 HELIX 11 AB2 GLY A 265 GLY A 273 1 9 SHEET 1 AA1 5 VAL A 136 PRO A 140 0 SHEET 2 AA1 5 ARG A 110 GLU A 115 1 N ALA A 113 O LEU A 139 SHEET 3 AA1 5 THR A 88 VAL A 92 1 N VAL A 89 O TYR A 112 SHEET 4 AA1 5 VAL A 152 SER A 157 1 O ALA A 154 N LEU A 90 SHEET 5 AA1 5 LEU A 181 LEU A 188 1 O LYS A 182 N VAL A 152 SHEET 1 AA2 9 GLN A 254 GLU A 260 0 SHEET 2 AA2 9 SER A 191 ILE A 199 -1 N ALA A 192 O LEU A 259 SHEET 3 AA2 9 ALA A 286 PHE A 299 -1 O TRP A 294 N PHE A 195 SHEET 4 AA2 9 GLN A 323 VAL A 334 -1 O LEU A 326 N PHE A 291 SHEET 5 AA2 9 GLU A 238 GLN A 242 -1 N VAL A 240 O LEU A 325 SHEET 6 AA2 9 LYS A 370 MET A 376 1 O ALA A 375 N ILE A 239 SHEET 7 AA2 9 LEU A 356 VAL A 364 -1 N TYR A 362 O LYS A 370 SHEET 8 AA2 9 ASP A 339 PRO A 348 -1 N LEU A 347 O ARG A 357 SHEET 9 AA2 9 VAL A 274 SER A 281 -1 N VAL A 274 O LEU A 346 SHEET 1 AA3 4 GLN A 254 GLU A 260 0 SHEET 2 AA3 4 SER A 191 ILE A 199 -1 N ALA A 192 O LEU A 259 SHEET 3 AA3 4 ALA A 286 PHE A 299 -1 O TRP A 294 N PHE A 195 SHEET 4 AA3 4 LEU A 308 SER A 311 -1 O LEU A 310 N VAL A 297 CISPEP 1 LEU A 188 PRO A 189 0 -9.02 SITE 1 AC1 25 MET A 63 ARG A 69 GLY A 93 ALA A 94 SITE 2 AC1 25 GLY A 95 THR A 96 LEU A 99 GLU A 115 SITE 3 AC1 25 ALA A 116 SER A 117 GLY A 141 PRO A 142 SITE 4 AC1 25 VAL A 143 GLU A 144 GLU A 158 TYR A 162 SITE 5 AC1 25 GLU A 167 MET A 169 SER A 172 HOH A 507 SITE 6 AC1 25 HOH A 517 HOH A 535 HOH A 585 HOH A 595 SITE 7 AC1 25 HOH A 614 CRYST1 77.703 77.703 117.692 90.00 90.00 90.00 I 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012870 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012870 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008497 0.00000