HEADER HYDROLASE 13-SEP-16 5LV9 TITLE CRYSTAL STRUCTURE OF THERMOPHILIC TRYPTOPHAN HALOGENASE (TH-HAL) TITLE 2 ENZYME FROM STREPTOMYCIN VIOLACEUSNIGER. COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMOPHILIC TRYPTOPHAN HALOGENASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES VIOLACEUSNIGER; SOURCE 3 ORGANISM_TAXID: 68280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS THERMOPHILIC, FLAVIN REDUCTASE, ENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.DUNSTAN,B.MENON REVDAT 4 08-MAY-24 5LV9 1 REMARK REVDAT 3 16-OCT-19 5LV9 1 REMARK REVDAT 2 30-AUG-17 5LV9 1 REMARK REVDAT 1 19-OCT-16 5LV9 0 JRNL AUTH B.R.MENON,J.LATHAM,M.S.DUNSTAN,E.BRANDENBURGER,U.KLEMSTEIN, JRNL AUTH 2 D.LEYS,C.KARTHIKEYAN,M.F.GREANEY,S.A.SHEPHERD,J.MICKLEFIELD JRNL TITL STRUCTURE AND BIOCATALYTIC SCOPE OF THERMOPHILIC JRNL TITL 2 FLAVIN-DEPENDENT HALOGENASE AND FLAVIN REDUCTASE ENZYMES. JRNL REF ORG.BIOMOL.CHEM. V. 14 9354 2016 JRNL REFN ESSN 1477-0539 JRNL PMID 27714222 JRNL DOI 10.1039/C6OB01861K REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 51445 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6543 6.0627 206.1986 REMARK 3 T TENSOR REMARK 3 T11: 0.4245 T22: 0.2619 REMARK 3 T33: 0.2329 T12: -0.0694 REMARK 3 T13: -0.0109 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 2.0181 L22: 1.6291 REMARK 3 L33: 1.4389 L12: 1.2499 REMARK 3 L13: -0.4146 L23: -0.7012 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: -0.2051 S13: -0.0238 REMARK 3 S21: -0.0952 S22: -0.1233 S23: 0.0656 REMARK 3 S31: 0.0961 S32: -0.2462 S33: -0.0073 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.7421 -1.8297 215.5060 REMARK 3 T TENSOR REMARK 3 T11: 0.4630 T22: 0.1598 REMARK 3 T33: 0.3040 T12: -0.1354 REMARK 3 T13: -0.0005 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.0373 L22: 0.4004 REMARK 3 L33: 1.5277 L12: 0.2219 REMARK 3 L13: 0.0214 L23: -0.3719 REMARK 3 S TENSOR REMARK 3 S11: 0.1521 S12: 0.1167 S13: 0.0730 REMARK 3 S21: 0.1173 S22: -0.0400 S23: 0.1192 REMARK 3 S31: -0.0704 S32: -0.2364 S33: -0.0060 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 245 THROUGH 510 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.0973 -11.0417 219.1450 REMARK 3 T TENSOR REMARK 3 T11: 0.4390 T22: 0.1415 REMARK 3 T33: 0.2480 T12: -0.0925 REMARK 3 T13: -0.0501 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.2843 L22: 0.5690 REMARK 3 L33: 1.6590 L12: -0.0257 REMARK 3 L13: -0.1416 L23: -0.1094 REMARK 3 S TENSOR REMARK 3 S11: 0.0392 S12: 0.0460 S13: -0.0400 REMARK 3 S21: 0.0174 S22: -0.0392 S23: 0.0558 REMARK 3 S31: 0.2807 S32: -0.0421 S33: 0.0051 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.4787 2.1855 261.7830 REMARK 3 T TENSOR REMARK 3 T11: 0.3311 T22: 0.2221 REMARK 3 T33: 0.2577 T12: -0.1186 REMARK 3 T13: -0.0111 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 1.0965 L22: 1.6801 REMARK 3 L33: 1.9240 L12: -0.7765 REMARK 3 L13: -0.0098 L23: -1.1725 REMARK 3 S TENSOR REMARK 3 S11: 0.0604 S12: -0.0829 S13: 0.1742 REMARK 3 S21: 0.1551 S22: -0.1560 S23: -0.1350 REMARK 3 S31: 0.0406 S32: -0.1847 S33: -0.0028 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 244 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.8602 12.4766 250.3569 REMARK 3 T TENSOR REMARK 3 T11: 0.3231 T22: 0.1791 REMARK 3 T33: 0.2701 T12: -0.0946 REMARK 3 T13: -0.0616 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 0.2735 L22: 1.1507 REMARK 3 L33: 1.2462 L12: 0.1036 REMARK 3 L13: -0.2951 L23: 0.0564 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: -0.0543 S13: 0.0252 REMARK 3 S21: -0.1535 S22: 0.0554 S23: 0.1928 REMARK 3 S31: -0.0167 S32: -0.2395 S33: -0.0325 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 245 THROUGH 514 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.3331 18.8259 246.3214 REMARK 3 T TENSOR REMARK 3 T11: 0.3113 T22: 0.1736 REMARK 3 T33: 0.2445 T12: -0.0955 REMARK 3 T13: -0.0204 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.2263 L22: 0.9207 REMARK 3 L33: 1.5391 L12: 0.1516 REMARK 3 L13: 0.0403 L23: -0.0162 REMARK 3 S TENSOR REMARK 3 S11: -0.0186 S12: -0.0772 S13: 0.0202 REMARK 3 S21: -0.1479 S22: 0.0146 S23: 0.0978 REMARK 3 S31: -0.1775 S32: -0.0109 S33: 0.0131 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 180 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51611 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 57.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.06 M DIVALENTS (0.3M MAGNESIUM REMARK 280 CHLORIDE HEXAHYDRATE; 0.3M CALCIUM CHLORIDE DEHYDRATE) IN 0.1 M REMARK 280 BUFFER (1.0M IMIDAZOLE + MES MONOHYDRATE ACID BUFFER) AT PH 6.5 REMARK 280 MADE UP WITH A 50% V/V PRECIPITANT MIX (THAT CONTAINED 25% V/V REMARK 280 MPD; 25% PEG 1000; 25% W/V PEG 3350)., VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 318.24667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 159.12333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 238.68500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.56167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 397.80833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 511 REMARK 465 PHE A 512 REMARK 465 THR A 513 REMARK 465 GLN A 514 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 198 O HOH A 601 1.82 REMARK 500 O HOH B 753 O HOH B 766 1.87 REMARK 500 O HOH B 730 O HOH B 751 1.88 REMARK 500 O TRP A 382 O HOH A 602 1.89 REMARK 500 O HOH B 795 O HOH B 802 1.90 REMARK 500 O HOH B 781 O HOH B 792 1.92 REMARK 500 O HOH B 719 O HOH B 751 1.93 REMARK 500 O HOH B 771 O HOH B 797 1.95 REMARK 500 NH1 ARG B 53 O HOH B 601 1.99 REMARK 500 NH2 ARG A 233 O HOH A 603 1.99 REMARK 500 O HOH B 647 O HOH B 783 2.01 REMARK 500 O HOH B 679 O HOH B 786 2.01 REMARK 500 OG1 THR A 276 O HOH A 604 2.05 REMARK 500 OE2 GLU B 371 O HOH B 602 2.07 REMARK 500 OE1 GLU B 403 O HOH B 603 2.07 REMARK 500 OD1 ASP A 381 O HOH A 605 2.07 REMARK 500 O HOH B 717 O HOH B 799 2.09 REMARK 500 O HOH B 682 O HOH B 698 2.09 REMARK 500 O HOH B 795 O HOH B 796 2.09 REMARK 500 O HOH B 645 O HOH B 774 2.10 REMARK 500 O HIS B 218 O HOH B 604 2.12 REMARK 500 O HOH A 663 O HOH A 689 2.13 REMARK 500 NH1 ARG A 136 OH TYR A 170 2.13 REMARK 500 OE1 GLN B 249 O HOH B 605 2.15 REMARK 500 O ARG B 426 O HOH B 606 2.16 REMARK 500 OD1 ASP B 51 O HOH B 607 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 648 O HOH B 749 6544 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 157 CA - CB - CG ANGL. DEV. = 24.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 3 18.74 -157.67 REMARK 500 SER A 36 -70.86 -105.91 REMARK 500 HIS A 38 127.16 -19.82 REMARK 500 ALA A 41 -114.90 50.92 REMARK 500 VAL A 42 -86.11 -119.95 REMARK 500 ASN A 101 37.29 38.25 REMARK 500 ASP A 144 107.77 -50.70 REMARK 500 ALA A 171 -156.73 -122.42 REMARK 500 LYS A 343 -111.10 53.11 REMARK 500 PRO A 357 28.93 -78.43 REMARK 500 SER A 360 70.31 43.66 REMARK 500 ASN A 415 23.04 -144.23 REMARK 500 PRO A 444 123.03 -32.41 REMARK 500 HIS A 454 21.84 -151.36 REMARK 500 ASN B 3 -16.34 -145.66 REMARK 500 ALA B 41 -122.56 49.22 REMARK 500 PHE B 94 74.77 -101.07 REMARK 500 ASN B 101 49.41 38.16 REMARK 500 GLN B 112 30.42 -149.23 REMARK 500 ALA B 171 -161.26 -128.30 REMARK 500 LYS B 343 -116.81 49.02 REMARK 500 PRO B 357 36.94 -73.17 REMARK 500 ASN B 415 27.37 -144.58 REMARK 500 PRO B 444 129.95 -39.71 REMARK 500 HIS B 454 24.17 -148.35 REMARK 500 ASP B 510 63.46 -66.23 REMARK 500 TYR B 511 -34.40 -156.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 770 DISTANCE = 6.42 ANGSTROMS DBREF 5LV9 A 2 514 PDB 5LV9 5LV9 2 514 DBREF 5LV9 B 2 514 PDB 5LV9 5LV9 2 514 SEQRES 1 A 513 LEU ASN ASN VAL VAL ILE VAL GLY GLY GLY THR ALA GLY SEQRES 2 A 513 TRP MET THR ALA SER TYR LEU LYS ALA ALA PHE GLY ASP SEQRES 3 A 513 ARG ILE ASP ILE THR LEU VAL GLU SER GLY HIS ILE GLY SEQRES 4 A 513 ALA VAL GLY VAL GLY GLU ALA THR PHE SER ASP ILE ARG SEQRES 5 A 513 HIS PHE PHE GLU PHE LEU GLY LEU LYS GLU LYS ASP TRP SEQRES 6 A 513 MET PRO ALA CYS ASN ALA THR TYR LYS LEU ALA VAL ARG SEQRES 7 A 513 PHE GLU ASN TRP ARG GLU LYS GLY HIS TYR PHE TYR HIS SEQRES 8 A 513 PRO PHE GLU GLN MET ARG SER VAL ASN GLY PHE PRO LEU SEQRES 9 A 513 THR ASP TRP TRP LEU LYS GLN GLY PRO THR ASP ARG PHE SEQRES 10 A 513 ASP LYS ASP CYS PHE VAL MET ALA SER VAL ILE ASP ALA SEQRES 11 A 513 GLY LEU SER PRO ARG HIS GLN ASP GLY THR LEU ILE ASP SEQRES 12 A 513 GLN PRO PHE ASP GLU GLY ALA ASP GLU MET GLN GLY LEU SEQRES 13 A 513 THR MET SER GLU HIS GLN GLY LYS THR GLN PHE PRO TYR SEQRES 14 A 513 ALA TYR GLN PHE GLU ALA ALA LEU LEU ALA LYS TYR LEU SEQRES 15 A 513 THR LYS TYR SER VAL GLU ARG GLY VAL LYS HIS ILE VAL SEQRES 16 A 513 ASP ASP VAL ARG GLU VAL SER LEU ASP ASP ARG GLY TRP SEQRES 17 A 513 ILE THR GLY VAL ARG THR GLY GLU HIS GLY ASP LEU THR SEQRES 18 A 513 GLY ASP LEU PHE ILE ASP CYS THR GLY PHE ARG GLY LEU SEQRES 19 A 513 LEU LEU ASN GLN ALA LEU GLU GLU PRO PHE ILE SER TYR SEQRES 20 A 513 GLN ASP THR LEU PRO ASN ASP SER ALA VAL ALA LEU GLN SEQRES 21 A 513 VAL PRO MET ASP MET GLU ARG ARG GLY ILE LEU PRO CYS SEQRES 22 A 513 THR THR ALA THR ALA GLN ASP ALA GLY TRP ILE TRP THR SEQRES 23 A 513 ILE PRO LEU THR GLY ARG VAL GLY THR GLY TYR VAL TYR SEQRES 24 A 513 ALA LYS ASP TYR LEU SER PRO GLU GLU ALA GLU ARG THR SEQRES 25 A 513 LEU ARG GLU PHE VAL GLY PRO ALA ALA ALA ASP VAL GLU SEQRES 26 A 513 ALA ASN HIS ILE ARG MET ARG ILE GLY ARG SER ARG ASN SEQRES 27 A 513 SER TRP VAL LYS ASN CYS VAL ALA ILE GLY LEU SER SER SEQRES 28 A 513 GLY PHE VAL GLU PRO LEU GLU SER THR GLY ILE PHE PHE SEQRES 29 A 513 ILE HIS HIS ALA ILE GLU GLN LEU VAL LYS ASN PHE PRO SEQRES 30 A 513 ALA ALA ASP TRP ASN SER MET HIS ARG ASP LEU TYR ASN SEQRES 31 A 513 SER ALA VAL SER HIS VAL MET ASP GLY VAL ARG GLU PHE SEQRES 32 A 513 LEU VAL LEU HIS TYR VAL ALA ALA LYS ARG ASN ASP THR SEQRES 33 A 513 GLN TYR TRP ARG ASP THR LYS THR ARG LYS ILE PRO ASP SEQRES 34 A 513 SER LEU ALA GLU ARG ILE GLU LYS TRP LYS VAL GLN LEU SEQRES 35 A 513 PRO ASP SER GLU THR VAL TYR PRO TYR TYR HIS GLY LEU SEQRES 36 A 513 PRO PRO TYR SER TYR MET CYS ILE LEU LEU GLY MET GLY SEQRES 37 A 513 GLY ILE GLU LEU LYS PRO SER PRO ALA LEU ALA LEU ALA SEQRES 38 A 513 ASP GLY GLY ALA ALA GLN ARG GLU PHE GLU GLN ILE ARG SEQRES 39 A 513 ASN LYS THR GLN ARG LEU THR GLU VAL LEU PRO LYS ALA SEQRES 40 A 513 TYR ASP TYR PHE THR GLN SEQRES 1 B 513 LEU ASN ASN VAL VAL ILE VAL GLY GLY GLY THR ALA GLY SEQRES 2 B 513 TRP MET THR ALA SER TYR LEU LYS ALA ALA PHE GLY ASP SEQRES 3 B 513 ARG ILE ASP ILE THR LEU VAL GLU SER GLY HIS ILE GLY SEQRES 4 B 513 ALA VAL GLY VAL GLY GLU ALA THR PHE SER ASP ILE ARG SEQRES 5 B 513 HIS PHE PHE GLU PHE LEU GLY LEU LYS GLU LYS ASP TRP SEQRES 6 B 513 MET PRO ALA CYS ASN ALA THR TYR LYS LEU ALA VAL ARG SEQRES 7 B 513 PHE GLU ASN TRP ARG GLU LYS GLY HIS TYR PHE TYR HIS SEQRES 8 B 513 PRO PHE GLU GLN MET ARG SER VAL ASN GLY PHE PRO LEU SEQRES 9 B 513 THR ASP TRP TRP LEU LYS GLN GLY PRO THR ASP ARG PHE SEQRES 10 B 513 ASP LYS ASP CYS PHE VAL MET ALA SER VAL ILE ASP ALA SEQRES 11 B 513 GLY LEU SER PRO ARG HIS GLN ASP GLY THR LEU ILE ASP SEQRES 12 B 513 GLN PRO PHE ASP GLU GLY ALA ASP GLU MET GLN GLY LEU SEQRES 13 B 513 THR MET SER GLU HIS GLN GLY LYS THR GLN PHE PRO TYR SEQRES 14 B 513 ALA TYR GLN PHE GLU ALA ALA LEU LEU ALA LYS TYR LEU SEQRES 15 B 513 THR LYS TYR SER VAL GLU ARG GLY VAL LYS HIS ILE VAL SEQRES 16 B 513 ASP ASP VAL ARG GLU VAL SER LEU ASP ASP ARG GLY TRP SEQRES 17 B 513 ILE THR GLY VAL ARG THR GLY GLU HIS GLY ASP LEU THR SEQRES 18 B 513 GLY ASP LEU PHE ILE ASP CYS THR GLY PHE ARG GLY LEU SEQRES 19 B 513 LEU LEU ASN GLN ALA LEU GLU GLU PRO PHE ILE SER TYR SEQRES 20 B 513 GLN ASP THR LEU PRO ASN ASP SER ALA VAL ALA LEU GLN SEQRES 21 B 513 VAL PRO MET ASP MET GLU ARG ARG GLY ILE LEU PRO CYS SEQRES 22 B 513 THR THR ALA THR ALA GLN ASP ALA GLY TRP ILE TRP THR SEQRES 23 B 513 ILE PRO LEU THR GLY ARG VAL GLY THR GLY TYR VAL TYR SEQRES 24 B 513 ALA LYS ASP TYR LEU SER PRO GLU GLU ALA GLU ARG THR SEQRES 25 B 513 LEU ARG GLU PHE VAL GLY PRO ALA ALA ALA ASP VAL GLU SEQRES 26 B 513 ALA ASN HIS ILE ARG MET ARG ILE GLY ARG SER ARG ASN SEQRES 27 B 513 SER TRP VAL LYS ASN CYS VAL ALA ILE GLY LEU SER SER SEQRES 28 B 513 GLY PHE VAL GLU PRO LEU GLU SER THR GLY ILE PHE PHE SEQRES 29 B 513 ILE HIS HIS ALA ILE GLU GLN LEU VAL LYS ASN PHE PRO SEQRES 30 B 513 ALA ALA ASP TRP ASN SER MET HIS ARG ASP LEU TYR ASN SEQRES 31 B 513 SER ALA VAL SER HIS VAL MET ASP GLY VAL ARG GLU PHE SEQRES 32 B 513 LEU VAL LEU HIS TYR VAL ALA ALA LYS ARG ASN ASP THR SEQRES 33 B 513 GLN TYR TRP ARG ASP THR LYS THR ARG LYS ILE PRO ASP SEQRES 34 B 513 SER LEU ALA GLU ARG ILE GLU LYS TRP LYS VAL GLN LEU SEQRES 35 B 513 PRO ASP SER GLU THR VAL TYR PRO TYR TYR HIS GLY LEU SEQRES 36 B 513 PRO PRO TYR SER TYR MET CYS ILE LEU LEU GLY MET GLY SEQRES 37 B 513 GLY ILE GLU LEU LYS PRO SER PRO ALA LEU ALA LEU ALA SEQRES 38 B 513 ASP GLY GLY ALA ALA GLN ARG GLU PHE GLU GLN ILE ARG SEQRES 39 B 513 ASN LYS THR GLN ARG LEU THR GLU VAL LEU PRO LYS ALA SEQRES 40 B 513 TYR ASP TYR PHE THR GLN FORMUL 3 HOH *377(H2 O) HELIX 1 AA1 GLY A 10 GLY A 26 1 17 HELIX 2 AA2 ASP A 27 ILE A 29 5 3 HELIX 3 AA3 ASP A 51 GLY A 60 1 10 HELIX 4 AA4 LYS A 62 MET A 67 1 6 HELIX 5 AA5 PRO A 68 ASN A 71 5 4 HELIX 6 AA6 LEU A 105 GLY A 113 1 9 HELIX 7 AA7 ARG A 117 PHE A 123 1 7 HELIX 8 AA8 PHE A 123 ALA A 131 1 9 HELIX 9 AA9 THR A 158 GLN A 163 1 6 HELIX 10 AB1 ALA A 176 ARG A 190 1 15 HELIX 11 AB2 THR A 230 GLY A 234 5 5 HELIX 12 AB3 ARG A 268 LEU A 272 5 5 HELIX 13 AB4 SER A 306 GLY A 319 1 14 HELIX 14 AB5 PRO A 320 ALA A 323 5 4 HELIX 15 AB6 GLU A 356 SER A 360 5 5 HELIX 16 AB7 THR A 361 ASN A 376 1 16 HELIX 17 AB8 ASN A 383 ALA A 412 1 30 HELIX 18 AB9 THR A 417 THR A 423 1 7 HELIX 19 AC1 PRO A 429 LYS A 440 1 12 HELIX 20 AC2 PRO A 457 GLY A 469 1 13 HELIX 21 AC3 SER A 476 LEU A 481 5 6 HELIX 22 AC4 GLY A 484 LEU A 505 1 22 HELIX 23 AC5 GLY B 10 PHE B 25 1 16 HELIX 24 AC6 ASP B 51 GLY B 60 1 10 HELIX 25 AC7 LYS B 62 ASN B 71 1 10 HELIX 26 AC8 LEU B 105 GLY B 113 1 9 HELIX 27 AC9 ARG B 117 PHE B 123 1 7 HELIX 28 AD1 PHE B 123 ALA B 131 1 9 HELIX 29 AD2 THR B 158 GLN B 163 1 6 HELIX 30 AD3 ALA B 176 GLU B 189 1 14 HELIX 31 AD4 THR B 230 GLY B 234 5 5 HELIX 32 AD5 ARG B 268 LEU B 272 5 5 HELIX 33 AD6 SER B 306 GLY B 319 1 14 HELIX 34 AD7 PRO B 320 ALA B 323 5 4 HELIX 35 AD8 THR B 361 ASN B 376 1 16 HELIX 36 AD9 ASN B 383 ALA B 411 1 29 HELIX 37 AE1 THR B 417 THR B 423 1 7 HELIX 38 AE2 PRO B 429 LYS B 440 1 12 HELIX 39 AE3 PRO B 457 GLY B 469 1 13 HELIX 40 AE4 SER B 476 ALA B 482 5 7 HELIX 41 AE5 ASP B 483 LEU B 505 1 23 SHEET 1 AA1 6 LYS A 193 VAL A 196 0 SHEET 2 AA1 6 ASP A 30 GLU A 35 1 N LEU A 33 O ILE A 195 SHEET 3 AA1 6 ASN A 4 VAL A 8 1 N VAL A 5 O ASP A 30 SHEET 4 AA1 6 LEU A 225 ASP A 228 1 O ILE A 227 N VAL A 8 SHEET 5 AA1 6 CYS A 345 ALA A 347 1 O VAL A 346 N ASP A 228 SHEET 6 AA1 6 TRP A 341 VAL A 342 -1 N VAL A 342 O CYS A 345 SHEET 1 AA2 3 GLY A 45 ALA A 47 0 SHEET 2 AA2 3 ALA A 171 GLU A 175 -1 O PHE A 174 N GLU A 46 SHEET 3 AA2 3 THR A 73 LYS A 75 -1 N LYS A 75 O ALA A 171 SHEET 1 AA3 7 TYR A 89 PRO A 93 0 SHEET 2 AA3 7 ALA A 77 GLU A 81 -1 N PHE A 80 O PHE A 90 SHEET 3 AA3 7 THR A 275 ALA A 279 1 O THR A 275 N ARG A 79 SHEET 4 AA3 7 GLY A 283 PRO A 289 -1 O ILE A 285 N THR A 278 SHEET 5 AA3 7 VAL A 294 TYR A 300 -1 O GLY A 295 N ILE A 288 SHEET 6 AA3 7 SER A 256 VAL A 262 -1 N VAL A 262 O VAL A 294 SHEET 7 AA3 7 ASN A 328 ARG A 331 -1 O ILE A 330 N ALA A 257 SHEET 1 AA4 2 SER A 99 VAL A 100 0 SHEET 2 AA4 2 PHE A 103 PRO A 104 -1 O PHE A 103 N VAL A 100 SHEET 1 AA5 3 VAL A 199 LEU A 204 0 SHEET 2 AA5 3 ILE A 210 THR A 215 -1 O ARG A 214 N ARG A 200 SHEET 3 AA5 3 ASP A 220 THR A 222 -1 O LEU A 221 N VAL A 213 SHEET 1 AA6 3 PHE A 245 SER A 247 0 SHEET 2 AA6 3 GLY A 335 SER A 337 -1 O ARG A 336 N ILE A 246 SHEET 3 AA6 3 GLY A 353 PHE A 354 -1 O PHE A 354 N GLY A 335 SHEET 1 AA7 6 LYS B 193 VAL B 196 0 SHEET 2 AA7 6 ASP B 30 GLU B 35 1 N LEU B 33 O LYS B 193 SHEET 3 AA7 6 ASN B 4 VAL B 8 1 N ILE B 7 O THR B 32 SHEET 4 AA7 6 LEU B 225 ASP B 228 1 O ILE B 227 N VAL B 6 SHEET 5 AA7 6 CYS B 345 ALA B 347 1 O VAL B 346 N ASP B 228 SHEET 6 AA7 6 TRP B 341 VAL B 342 -1 N VAL B 342 O CYS B 345 SHEET 1 AA8 3 GLY B 45 ALA B 47 0 SHEET 2 AA8 3 ALA B 171 GLU B 175 -1 O PHE B 174 N GLU B 46 SHEET 3 AA8 3 THR B 73 LYS B 75 -1 N LYS B 75 O ALA B 171 SHEET 1 AA9 7 TYR B 89 PRO B 93 0 SHEET 2 AA9 7 ALA B 77 GLU B 81 -1 N VAL B 78 O HIS B 92 SHEET 3 AA9 7 THR B 275 GLN B 280 1 O THR B 275 N ARG B 79 SHEET 4 AA9 7 GLY B 283 PRO B 289 -1 O GLY B 283 N GLN B 280 SHEET 5 AA9 7 VAL B 294 TYR B 300 -1 O GLY B 295 N ILE B 288 SHEET 6 AA9 7 SER B 256 VAL B 262 -1 N VAL B 262 O VAL B 294 SHEET 7 AA9 7 ASN B 328 ARG B 331 -1 O ILE B 330 N ALA B 257 SHEET 1 AB1 2 SER B 99 VAL B 100 0 SHEET 2 AB1 2 PHE B 103 PRO B 104 -1 O PHE B 103 N VAL B 100 SHEET 1 AB2 3 VAL B 199 LEU B 204 0 SHEET 2 AB2 3 ILE B 210 THR B 215 -1 O ARG B 214 N ARG B 200 SHEET 3 AB2 3 ASP B 220 THR B 222 -1 O LEU B 221 N VAL B 213 SHEET 1 AB3 3 PHE B 245 SER B 247 0 SHEET 2 AB3 3 GLY B 335 SER B 337 -1 O ARG B 336 N ILE B 246 SHEET 3 AB3 3 GLY B 353 PHE B 354 -1 O PHE B 354 N GLY B 335 CRYST1 67.140 67.140 477.370 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014894 0.008599 0.000000 0.00000 SCALE2 0.000000 0.017198 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002095 0.00000