HEADER SIGNALING PROTEIN 14-SEP-16 5LVR TITLE CRYSTAL STRUCTURE OF HUMAN PCAF BROMODOMAIN IN COMPLEX WITH COMPOUND-E TITLE 2 (CPD-E) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE ACETYLTRANSFERASE KAT2B; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HISTONE ACETYLTRANSFERASE PCAF,HISTONE ACETYLASE PCAF,LYSINE COMPND 5 ACETYLTRANSFERASE 2B,P300/CBP-ASSOCIATED FACTOR,P/CAF; COMPND 6 EC: 2.3.1.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KAT2B, PCAF; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: R3-PRARE2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS SIGNALING PROTEIN, BROMODOMAIN, HISTONE ACETYLTRANSFERASE KAT2B, KEYWDS 2 HISTONE, ACETYLATION, ACETYLLYSINE, EPIGENETICS, STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM (SGC) EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,P.FILIPPAKOPOULOS,F.VON DELFT,C.BOUNTRA,C.H.ARROWSMITH, AUTHOR 2 A.M.EDWARDS,A.L.HOPKINS,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 3 08-MAY-24 5LVR 1 REMARK REVDAT 2 11-JAN-17 5LVR 1 JRNL REVDAT 1 26-OCT-16 5LVR 0 JRNL AUTH I.NAVRATILOVA,T.ARISTOTELOUS,S.PICAUD,A.CHAIKUAD,S.KNAPP, JRNL AUTH 2 P.FILAPPAKOPOULOS,A.L.HOPKINS JRNL TITL DISCOVERY OF NEW BROMODOMAIN SCAFFOLDS BY BIOSENSOR FRAGMENT JRNL TITL 2 SCREENING. JRNL REF ACS MED CHEM LETT V. 7 1213 2016 JRNL REFN ISSN 1948-5875 JRNL PMID 27994766 JRNL DOI 10.1021/ACSMEDCHEMLETT.6B00154 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22096 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1198 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1614 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.2910 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1802 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.90000 REMARK 3 B12 (A**2) : -0.14000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.138 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.112 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.137 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1932 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1857 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2595 ; 1.646 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4293 ; 1.203 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 5.781 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 92 ;36.745 ;23.478 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 361 ;14.709 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.554 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 264 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2189 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 460 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 876 ; 3.453 ; 4.059 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 877 ; 3.451 ; 4.063 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1093 ; 4.791 ; 6.042 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1094 ; 4.789 ; 6.046 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1056 ; 4.939 ; 4.624 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1057 ; 4.937 ; 4.625 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1497 ; 7.291 ; 6.731 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2356 ; 9.927 ;33.577 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2357 ; 9.925 ;33.587 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 724 829 B 724 829 6158 0.13 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 724 A 831 REMARK 3 ORIGIN FOR THE GROUP (A): 0.3698 25.5411 79.7879 REMARK 3 T TENSOR REMARK 3 T11: 0.2511 T22: 0.1784 REMARK 3 T33: 0.0692 T12: 0.0010 REMARK 3 T13: 0.0711 T23: 0.0713 REMARK 3 L TENSOR REMARK 3 L11: 3.0019 L22: 2.3293 REMARK 3 L33: 1.6708 L12: -0.2851 REMARK 3 L13: 0.4287 L23: -1.5613 REMARK 3 S TENSOR REMARK 3 S11: -0.4205 S12: -0.1221 S13: -0.1377 REMARK 3 S21: -0.1879 S22: 0.3570 S23: 0.0114 REMARK 3 S31: -0.0185 S32: -0.0044 S33: 0.0635 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 723 B 830 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6528 36.3581 61.0289 REMARK 3 T TENSOR REMARK 3 T11: 0.1371 T22: 0.0799 REMARK 3 T33: 0.1432 T12: -0.0396 REMARK 3 T13: -0.0426 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 3.0311 L22: 1.8782 REMARK 3 L33: 3.4635 L12: 0.8257 REMARK 3 L13: -0.7186 L23: -0.4099 REMARK 3 S TENSOR REMARK 3 S11: -0.2181 S12: 0.1131 S13: -0.4489 REMARK 3 S21: 0.0699 S22: 0.2989 S23: -0.0493 REMARK 3 S31: -0.0276 S32: 0.0708 S33: -0.0807 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LVR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001450. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91997 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23298 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 49.830 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.66800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21-35% PEG 3350, 0.1 M BIS-TRIS PH 5.5 REMARK 280 -7.0 OR 21-40% MEDIUM-MOLECULAR-WEIGHT PEG SMEARS (MMW PEG REMARK 280 SMEARS) BUFFERED EITHER WITH 0.1 M BIS-TRIS PH 6.0-7.5 OR 0.1 M REMARK 280 TRIS PH 7.5-8.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.82950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.76908 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.45133 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 49.82950 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 28.76908 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 33.45133 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 49.82950 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 28.76908 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.45133 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.53815 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 66.90267 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 57.53815 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 66.90267 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 57.53815 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 66.90267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 713 REMARK 465 MET A 714 REMARK 465 GLY A 715 REMARK 465 LYS A 716 REMARK 465 GLU A 717 REMARK 465 LYS A 718 REMARK 465 SER A 719 REMARK 465 LYS A 720 REMARK 465 GLU A 721 REMARK 465 PRO A 722 REMARK 465 ARG A 723 REMARK 465 SER B 713 REMARK 465 MET B 714 REMARK 465 GLY B 715 REMARK 465 LYS B 716 REMARK 465 GLU B 717 REMARK 465 LYS B 718 REMARK 465 SER B 719 REMARK 465 LYS B 720 REMARK 465 GLU B 721 REMARK 465 PRO B 722 REMARK 465 ASP B 831 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 724 CG OD1 OD2 REMARK 470 ASP A 831 CG OD1 OD2 REMARK 470 ARG B 723 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 830 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 765 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 757 60.37 -156.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 78Y A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS B 904 DBREF 5LVR A 715 831 UNP Q92831 KAT2B_HUMAN 715 831 DBREF 5LVR B 715 831 UNP Q92831 KAT2B_HUMAN 715 831 SEQADV 5LVR SER A 713 UNP Q92831 EXPRESSION TAG SEQADV 5LVR MET A 714 UNP Q92831 EXPRESSION TAG SEQADV 5LVR SER B 713 UNP Q92831 EXPRESSION TAG SEQADV 5LVR MET B 714 UNP Q92831 EXPRESSION TAG SEQRES 1 A 119 SER MET GLY LYS GLU LYS SER LYS GLU PRO ARG ASP PRO SEQRES 2 A 119 ASP GLN LEU TYR SER THR LEU LYS SER ILE LEU GLN GLN SEQRES 3 A 119 VAL LYS SER HIS GLN SER ALA TRP PRO PHE MET GLU PRO SEQRES 4 A 119 VAL LYS ARG THR GLU ALA PRO GLY TYR TYR GLU VAL ILE SEQRES 5 A 119 ARG PHE PRO MET ASP LEU LYS THR MET SER GLU ARG LEU SEQRES 6 A 119 LYS ASN ARG TYR TYR VAL SER LYS LYS LEU PHE MET ALA SEQRES 7 A 119 ASP LEU GLN ARG VAL PHE THR ASN CYS LYS GLU TYR ASN SEQRES 8 A 119 PRO PRO GLU SER GLU TYR TYR LYS CYS ALA ASN ILE LEU SEQRES 9 A 119 GLU LYS PHE PHE PHE SER LYS ILE LYS GLU ALA GLY LEU SEQRES 10 A 119 ILE ASP SEQRES 1 B 119 SER MET GLY LYS GLU LYS SER LYS GLU PRO ARG ASP PRO SEQRES 2 B 119 ASP GLN LEU TYR SER THR LEU LYS SER ILE LEU GLN GLN SEQRES 3 B 119 VAL LYS SER HIS GLN SER ALA TRP PRO PHE MET GLU PRO SEQRES 4 B 119 VAL LYS ARG THR GLU ALA PRO GLY TYR TYR GLU VAL ILE SEQRES 5 B 119 ARG PHE PRO MET ASP LEU LYS THR MET SER GLU ARG LEU SEQRES 6 B 119 LYS ASN ARG TYR TYR VAL SER LYS LYS LEU PHE MET ALA SEQRES 7 B 119 ASP LEU GLN ARG VAL PHE THR ASN CYS LYS GLU TYR ASN SEQRES 8 B 119 PRO PRO GLU SER GLU TYR TYR LYS CYS ALA ASN ILE LEU SEQRES 9 B 119 GLU LYS PHE PHE PHE SER LYS ILE LYS GLU ALA GLY LEU SEQRES 10 B 119 ILE ASP HET EDO A 901 4 HET EDO A 902 4 HET EDO A 903 4 HET 78Y A 904 15 HET EDO B 901 4 HET EDO B 902 4 HET EDO B 903 4 HET DMS B 904 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM 78Y 5-METHYL-2-PHENYL-1,2,3-TRIAZOLE-4-CARBOXAMIDE HETNAM DMS DIMETHYL SULFOXIDE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 6(C2 H6 O2) FORMUL 6 78Y C10 H10 N4 O FORMUL 10 DMS C2 H6 O S FORMUL 11 HOH *133(H2 O) HELIX 1 AA1 ASP A 726 HIS A 742 1 17 HELIX 2 AA2 ALA A 745 MET A 749 5 5 HELIX 3 AA3 LYS A 753 ALA A 757 5 5 HELIX 4 AA4 GLY A 759 ILE A 764 1 6 HELIX 5 AA5 ASP A 769 ASN A 779 1 11 HELIX 6 AA6 SER A 784 ASN A 803 1 20 HELIX 7 AA7 SER A 807 ALA A 827 1 21 HELIX 8 AA8 ASP B 724 HIS B 742 1 19 HELIX 9 AA9 GLN B 743 MET B 749 5 7 HELIX 10 AB1 LYS B 753 ALA B 757 5 5 HELIX 11 AB2 GLY B 759 ILE B 764 1 6 HELIX 12 AB3 ASP B 769 ASN B 779 1 11 HELIX 13 AB4 SER B 784 ASN B 803 1 20 HELIX 14 AB5 SER B 807 ALA B 827 1 21 SITE 1 AC1 5 LYS A 733 GLN A 737 SER A 774 LEU A 777 SITE 2 AC1 5 HOH A1004 SITE 1 AC2 4 TYR A 729 LYS A 778 ARG A 780 ARG B 776 SITE 1 AC3 7 GLN A 743 TRP A 746 GLU A 808 CYS A 812 SITE 2 AC3 7 GLN B 738 LYS B 823 HOH B1039 SITE 1 AC4 6 PRO A 747 GLU A 756 ASN A 803 TYR A 809 SITE 2 AC4 6 HOH A1003 GLN B 737 SITE 1 AC5 5 VAL B 752 LYS B 753 ARG B 754 TYR B 761 SITE 2 AC5 5 HOH B1044 SITE 1 AC6 8 GLU A 750 LYS B 740 HIS B 742 GLN B 743 SITE 2 AC6 8 ALA B 745 TRP B 746 MET B 749 HOH B1003 SITE 1 AC7 4 PRO B 747 GLU B 756 TYR B 809 DMS B 904 SITE 1 AC8 4 PRO B 747 ASN B 803 EDO B 903 HOH B1005 CRYST1 99.659 99.659 100.354 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010034 0.005793 0.000000 0.00000 SCALE2 0.000000 0.011587 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009965 0.00000