HEADER OXIDOREDUCTASE 14-SEP-16 5LVU TITLE XIAF (APO) FROM STREPTOMYCES SP. COMPND MOL_ID: 1; COMPND 2 MOLECULE: XIAF PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP.; SOURCE 3 ORGANISM_TAXID: 1931; SOURCE 4 GENE: XIAF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: CODONPLUS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PXU520 KEYWDS DETOXIFICATION, NON-CANONICAL FLAVIN-DEPENDENT TERPENOID CYCLASE, KEYWDS 2 XENOBIOTICS-DEGRADING ENZYME, INDIGO, INDIRUBIN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.KUGEL,M.BAUNACH,P.BAER,M.ISHIDA-ITO,S.SUNDARAM,Z.XU,M.GROLL, AUTHOR 2 C.HERTWECK REVDAT 3 17-JAN-24 5LVU 1 REMARK REVDAT 2 05-JUL-17 5LVU 1 JRNL REVDAT 1 28-JUN-17 5LVU 0 JRNL AUTH S.KUGEL,M.BAUNACH,P.BAER,M.ISHIDA-ITO,S.SUNDARAM,Z.XU, JRNL AUTH 2 M.GROLL,C.HERTWECK JRNL TITL CRYPTIC INDOLE HYDROXYLATION BY A NON-CANONICAL TERPENOID JRNL TITL 2 CYCLASE PARALLELS BACTERIAL XENOBIOTIC DETOXIFICATION. JRNL REF NAT COMMUN V. 8 15804 2017 JRNL REFN ESSN 2041-1723 JRNL PMID 28643772 JRNL DOI 10.1038/NCOMMS15804 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 24035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1265 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1684 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2510 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2954 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 62 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.90000 REMARK 3 B22 (A**2) : 0.90000 REMARK 3 B33 (A**2) : -2.93000 REMARK 3 B12 (A**2) : 0.90000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.204 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.773 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3023 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2866 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4123 ; 0.788 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6555 ; 0.689 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 392 ; 4.131 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;32.319 ;22.362 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 457 ;15.468 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;17.510 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 477 ; 0.040 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3461 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 695 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1571 ; 2.270 ; 6.064 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1570 ; 2.233 ; 6.063 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1962 ; 3.000 ; 9.092 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1963 ; 3.000 ; 9.093 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1451 ; 2.264 ; 6.361 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1443 ; 2.256 ; 6.370 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2149 ; 2.744 ; 9.441 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3389 ; 3.554 ;48.210 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3372 ; 3.381 ;48.136 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5888 ; 0.554 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 38 ;23.471 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5854 ;11.443 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 397 REMARK 3 ORIGIN FOR THE GROUP (A): 53.2099 -55.1060 -1.4247 REMARK 3 T TENSOR REMARK 3 T11: 0.0335 T22: 0.0409 REMARK 3 T33: 0.0046 T12: -0.0336 REMARK 3 T13: 0.0014 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.0177 L22: 0.1940 REMARK 3 L33: 0.1826 L12: 0.0181 REMARK 3 L13: -0.0542 L23: -0.0771 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.0013 S13: 0.0022 REMARK 3 S21: -0.0197 S22: 0.0033 S23: -0.0112 REMARK 3 S31: -0.0306 S32: 0.0145 S33: -0.0084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LVU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001434. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25318 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.90 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2JBR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 0.1 M HEPES, REMARK 280 0.1 M SODIUM CHLORIDE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.98000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.99000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.98000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.99000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.98000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 32.99000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 65.98000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.99000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -182.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 83.27000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -144.22787 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 32.99000 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 83.27000 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 -144.22787 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 32.99000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 ILE A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 66 -151.54 -91.11 REMARK 500 ALA A 125 88.22 -70.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2JBR RELATED DB: PDB REMARK 900 STRUCTURE OF THE MONOOXYGENASE COMPONENT OF P-HYDROXYPHENYLACETATE REMARK 900 HYDROXYLASE FROM ACINETOBACTER BAUMANNI DBREF 5LVU A 1 397 UNP I7IIA9 I7IIA9_9ACTN 3 399 SEQADV 5LVU HIS A -15 UNP I7IIA9 EXPRESSION TAG SEQADV 5LVU HIS A -14 UNP I7IIA9 EXPRESSION TAG SEQADV 5LVU HIS A -13 UNP I7IIA9 EXPRESSION TAG SEQADV 5LVU HIS A -12 UNP I7IIA9 EXPRESSION TAG SEQADV 5LVU HIS A -11 UNP I7IIA9 EXPRESSION TAG SEQADV 5LVU HIS A -10 UNP I7IIA9 EXPRESSION TAG SEQADV 5LVU SER A -9 UNP I7IIA9 EXPRESSION TAG SEQADV 5LVU SER A -8 UNP I7IIA9 EXPRESSION TAG SEQADV 5LVU GLY A -7 UNP I7IIA9 EXPRESSION TAG SEQADV 5LVU LEU A -6 UNP I7IIA9 EXPRESSION TAG SEQADV 5LVU VAL A -5 UNP I7IIA9 EXPRESSION TAG SEQADV 5LVU PRO A -4 UNP I7IIA9 EXPRESSION TAG SEQADV 5LVU ARG A -3 UNP I7IIA9 EXPRESSION TAG SEQADV 5LVU GLY A -2 UNP I7IIA9 EXPRESSION TAG SEQADV 5LVU SER A -1 UNP I7IIA9 EXPRESSION TAG SEQADV 5LVU HIS A 0 UNP I7IIA9 EXPRESSION TAG SEQRES 1 A 413 HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO ARG SEQRES 2 A 413 GLY SER HIS MET THR ASP ILE ARG SER GLU THR ALA GLU SEQRES 3 A 413 LEU ARG ALA GLU LEU VAL GLU ARG VAL HIS LYS PHE GLY SEQRES 4 A 413 PRO VAL PHE ALA ASP GLY VAL ALA GLU GLY GLU ARG GLU SEQRES 5 A 413 ARG ARG LEU PRO ASP ALA THR VAL ARG ALA ILE ASP GLN SEQRES 6 A 413 SER GLN LEU ALA MET LEU TRP THR ALA LYS SER TYR GLY SEQRES 7 A 413 GLY LEU GLU THR ASP VAL ARG THR MET SER GLU VAL ALA SEQRES 8 A 413 LYS VAL LEU SER HIS TYR CYS PRO SER THR SER TRP VAL SEQRES 9 A 413 VAL ASN ASN VAL ASN GLY SER ASN LEU LEU ALA SER LYS SEQRES 10 A 413 PHE PRO ARG ALA ALA LEU ASP GLU VAL PHE GLY ASP ALA SEQRES 11 A 413 PRO GLY ALA LYS LEU ALA SER VAL PHE ALA ALA ALA GLY SEQRES 12 A 413 THR ALA VAL ARG THR PRO GLY GLY TYR ARG LEU THR GLY SEQRES 13 A 413 SER TRP PRO TYR GLY THR GLY ILE LEU HIS ASP ASP TRP SEQRES 14 A 413 ALA ILE LEU VAL ALA ARG GLU VAL ASP ALA ASP GLY GLU SEQRES 15 A 413 PRO VAL GLY GLY LEU SER MET LEU VAL PRO ALA ARG ASP SEQRES 16 A 413 LEU THR VAL GLU ASP THR TRP HIS THR VAL GLY MET ARG SEQRES 17 A 413 ALA THR GLY SER HIS THR VAL VAL LEU ARG ASP THR PHE SEQRES 18 A 413 VAL PRO GLU HIS ARG VAL ILE SER GLY GLU LEU GLN ARG SEQRES 19 A 413 SER ARG GLU SER ALA THR ASP LEU GLY LEU PRO PRO LEU SEQRES 20 A 413 PHE ARG THR ALA ALA ILE ALA ALA MET ALA VAL VAL CYS SEQRES 21 A 413 ALA SER VAL VAL LEU GLY ALA GLY GLN ALA ALA ARG ALA SEQRES 22 A 413 LEU VAL VAL GLU LYS ALA PRO THR ARG GLY ILE ALA PRO SEQRES 23 A 413 SER LYS TYR THR ARG GLN THR ASP SER ARG THR PHE VAL SEQRES 24 A 413 SER SER LEU GLY ARG THR ALA LEU SER ILE ASP ALA ALA SEQRES 25 A 413 GLU MET HIS VAL ALA ARG ALA ALA THR ALA LEU ASP ASP SEQRES 26 A 413 ALA ALA TYR ASP ALA VAL ALA LEU PRO ASP SER GLU LEU SEQRES 27 A 413 LEU ARG ILE ARG GLY ASP VAL GLY GLN ALA VAL SER LEU SEQRES 28 A 413 VAL THR THR ALA LEU ASP GLU LEU LEU TRP ALA HIS GLY SEQRES 29 A 413 ALA ALA SER PHE ALA GLU SER ASN PRO LEU GLN ARG TYR SEQRES 30 A 413 TRP ARG ASP ALA ASN THR ALA ALA ARG HIS ALA MET LEU SEQRES 31 A 413 ASN VAL HIS VAL GLY HIS GLU LEU TYR GLY GLY SER PHE SEQRES 32 A 413 PHE GLY LEU ASP PRO ILE VAL PRO SER LEU HET SO4 A 401 5 HET SO4 A 402 5 HETNAM SO4 SULFATE ION FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 HOH *62(H2 O) HELIX 1 AA1 ARG A 5 GLY A 29 1 25 HELIX 2 AA2 GLY A 29 ARG A 37 1 9 HELIX 3 AA3 PRO A 40 GLN A 51 1 12 HELIX 4 AA4 ALA A 58 GLY A 62 5 5 HELIX 5 AA5 ASP A 67 CYS A 82 1 16 HELIX 6 AA6 CYS A 82 ALA A 99 1 18 HELIX 7 AA7 SER A 100 PHE A 102 5 3 HELIX 8 AA8 PRO A 103 GLY A 112 1 10 HELIX 9 AA9 GLY A 147 ASP A 151 5 5 HELIX 10 AB1 ARG A 178 LEU A 180 5 3 HELIX 11 AB2 MET A 191 GLY A 195 5 5 HELIX 12 AB3 GLY A 214 ARG A 218 1 5 HELIX 13 AB4 ARG A 220 ASP A 225 5 6 HELIX 14 AB5 PRO A 229 THR A 234 5 6 HELIX 15 AB6 ALA A 235 ALA A 263 1 29 HELIX 16 AB7 PRO A 264 ARG A 266 5 3 HELIX 17 AB8 ARG A 275 ASP A 278 5 4 HELIX 18 AB9 SER A 279 ALA A 314 1 36 HELIX 19 AC1 PRO A 318 GLY A 348 1 31 HELIX 20 AC2 ALA A 349 ALA A 353 5 5 HELIX 21 AC3 ASN A 356 ARG A 370 1 15 HELIX 22 AC4 HIS A 371 LEU A 374 5 4 HELIX 23 AC5 ASN A 375 PHE A 387 1 13 SHEET 1 AA1 6 LEU A 119 VAL A 122 0 SHEET 2 AA1 6 TRP A 153 VAL A 161 1 O ILE A 155 N ALA A 120 SHEET 3 AA1 6 GLY A 127 THR A 132 1 N GLY A 127 O ARG A 159 SHEET 4 AA1 6 GLY A 135 GLY A 145 -1 O THR A 139 N THR A 128 SHEET 5 AA1 6 HIS A 197 PRO A 207 -1 O THR A 204 N LEU A 138 SHEET 6 AA1 6 THR A 181 GLU A 183 -1 N THR A 181 O VAL A 200 SHEET 1 AA2 4 LEU A 119 VAL A 122 0 SHEET 2 AA2 4 TRP A 153 VAL A 161 1 O ILE A 155 N ALA A 120 SHEET 3 AA2 4 PRO A 167 PRO A 176 -1 O GLY A 169 N GLU A 160 SHEET 4 AA2 4 VAL A 211 SER A 213 -1 O ILE A 212 N SER A 172 CISPEP 1 ALA A 269 PRO A 270 0 -3.35 SITE 1 AC1 3 ARG A 104 ARG A 137 HOH A 510 SITE 1 AC2 6 GLY A 170 GLY A 214 GLU A 215 ARG A 218 SITE 2 AC2 6 HOH A 501 HOH A 503 CRYST1 166.540 166.540 98.970 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006005 0.003467 0.000000 0.00000 SCALE2 0.000000 0.006933 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010104 0.00000