HEADER ADP-RIBOSE BINDING PROTEIN 15-SEP-16 5LW6 TITLE CRYSTAL STRUCTURE OF A SE-MET SUBSTITUTED DICTYOSTELIUM DISCOIDEUM TITLE 2 ADP-RIBOSE BINDING MACRODOMAIN (RESIDUES 342-563) OF DDB_G0293866 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DDB_G0293866; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 ORGANISM_TAXID: 44689; SOURCE 5 GENE: DDB0192167; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MACRODOMAIN, ADP-RIBOSE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.LEYS,E.BARKAUSKAITE,B.B.PINERO,I.AHEL REVDAT 2 26-OCT-16 5LW6 1 JRNL REVDAT 1 28-SEP-16 5LW6 0 JRNL AUTH A.R.GUNN,B.BANOS-PINERO,P.PASCHKE,L.SANCHEZ-PULIDO,A.ARIZA, JRNL AUTH 2 J.DAY,M.EMRICH,D.LEYS,C.P.PONTING,I.AHEL,N.D.LAKIN JRNL TITL THE ROLE OF ADP-RIBOSYLATION IN REGULATING DNA INTERSTRAND JRNL TITL 2 CROSSLINK REPAIR. JRNL REF J.CELL.SCI. V. 129 3845 2016 JRNL REFN ESSN 1477-9137 JRNL PMID 27587838 JRNL DOI 10.1242/JCS.193375 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20867 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1131 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1495 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1660 REMARK 3 BIN FREE R VALUE SET COUNT : 77 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1786 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 103 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.319 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1836 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1785 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2475 ; 1.898 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4135 ; 0.908 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 6.140 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 84 ;40.835 ;25.357 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 341 ;14.138 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;11.446 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 271 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2052 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 415 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LW6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001464. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22050 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 25.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 25.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.94300 REMARK 200 FOR SHELL : 5.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION TRIALS WERE PERFORMED REMARK 280 WITH PROTEINS AT 25 MG/ML IN BUFFER CONTAINING 150 MM NACL, 1 MM REMARK 280 DTT AND 25 MM TRIS-HCL (PH 7.5), AT 20 C WITH COMMERCIAL SCREENS REMARK 280 USING THE SITTING-DROP VAPOUR-DIFFUSION METHOD. CRYSTALLIZATION REMARK 280 DROPS WERE SET UP WITH THE AID OF A MOSQUITO CRYSTAL ROBOT (TTP REMARK 280 LABTECH) USING 200 NL OF PROTEIN SOLUTION PLUS 200 NL OF REMARK 280 RESERVOIR SOLUTION IN MRC TWO-WELL CRYSTALLIZATION MICROPLATES REMARK 280 (SWISSCI) EQUILIBRATED AGAINST 75 MICROL OF RESERVOIR SOLUTION. REMARK 280 CO-CRYSTALLISATION TRIALS WERE SET UP BY ADDING 2 MM ADPR TO THE REMARK 280 PROTEIN FOR AT LEAST 1 HOUR PRIOR TO SETTING UP CRYSTALLISATION REMARK 280 DROPS. CRYSTALS OF THE MACRODOMAIN PROTEINS GREW IN 0.2 M REMARK 280 LITHIUM SULPHATE, 0.1 M PHOSPHATE/CITRATE AND 20% (W/V) PEG1000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.79500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.94500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.61000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.94500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.79500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.61000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -33 REMARK 465 GLY A -32 REMARK 465 SER A -31 REMARK 465 SER A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 SER A -23 REMARK 465 SER A -22 REMARK 465 GLY A -21 REMARK 465 LEU A -20 REMARK 465 VAL A -19 REMARK 465 PRO A -18 REMARK 465 ARG A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MSE A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MSE A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 ASN A -6 REMARK 465 ASN A -5 REMARK 465 MSE A -4 REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 163 CB CG OD1 ND2 REMARK 470 LYS A 164 CB CG CD CE NZ REMARK 470 GLN A 165 CB CG CD OE1 NE2 REMARK 470 GLU A 198 CB CG CD OE1 OE2 REMARK 470 PHE A 221 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 220 O HOH A 301 2.00 REMARK 500 OE2 GLU A 41 O HOH A 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 169 CB SER A 169 OG 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 30 -87.50 -105.53 REMARK 500 HIS A 54 33.36 -98.05 REMARK 500 ASN A 106 57.93 -109.90 REMARK 500 ASP A 134 105.98 74.36 REMARK 500 CYS A 149 -162.38 73.42 REMARK 500 LYS A 164 -48.25 25.08 REMARK 500 LEU A 184 78.21 -101.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 5LW6 A 1 221 UNP Q54B72 Q54B72_DICDI 343 563 SEQADV 5LW6 MSE A -33 UNP Q54B72 INITIATING METHIONINE SEQADV 5LW6 GLY A -32 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 SER A -31 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 SER A -30 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 HIS A -29 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 HIS A -28 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 HIS A -27 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 HIS A -26 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 HIS A -25 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 HIS A -24 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 SER A -23 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 SER A -22 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 GLY A -21 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 LEU A -20 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 VAL A -19 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 PRO A -18 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 ARG A -17 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 GLY A -16 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 SER A -15 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 HIS A -14 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 MSE A -13 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 ALA A -12 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 SER A -11 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 MSE A -10 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 THR A -9 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 GLY A -8 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 GLY A -7 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 ASN A -6 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 ASN A -5 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 MSE A -4 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 GLY A -3 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 ALA A -2 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 GLY A -1 UNP Q54B72 EXPRESSION TAG SEQADV 5LW6 SER A 0 UNP Q54B72 EXPRESSION TAG SEQRES 1 A 255 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 255 LEU VAL PRO ARG GLY SER HIS MSE ALA SER MSE THR GLY SEQRES 3 A 255 GLY ASN ASN MSE GLY ALA GLY SER SER LYS ILE ILE GLY SEQRES 4 A 255 PRO LYS TYR ARG LYS LYS ARG LEU THR ASP ALA LEU LYS SEQRES 5 A 255 GLU ARG SER LEU ALA PHE PRO PHE ILE SER THR SER THR SEQRES 6 A 255 PHE GLY PHE ASN ILE ASP ASP ALA THR GLU ILE SER ALA SEQRES 7 A 255 ASN ALA ILE SER GLU TYR LEU HIS PHE HIS GLU LYS GLU SEQRES 8 A 255 ASP ASP ILE LYS LEU LYS MSE MSE VAL GLU LYS SER ILE SEQRES 9 A 255 TYR SER ASP ASN LEU ILE GLN SER PHE LYS LYS HIS PHE SEQRES 10 A 255 ASN ASP LYS TRP ASP LYS ARG PHE GLU ILE ILE LYS ILE SEQRES 11 A 255 GLU ASN SER ASN SER LEU GLU GLN PHE ASN LEU GLY CYS SEQRES 12 A 255 LYS LEU PHE ALA THR GLU SER THR TRP ARG LEU LYS LYS SEQRES 13 A 255 THR PRO GLN ASN LYS GLN LEU TYR GLU MSE LEU ASP THR SEQRES 14 A 255 GLY THR PHE GLU LYS VAL THR LYS ASN LEU TYR PRO ASN SEQRES 15 A 255 CYS GLY LYS ILE GLY LYS VAL TYR PRO ILE SER LEU GLN SEQRES 16 A 255 ASN ASN LYS GLN LEU VAL ASN SER ILE LEU HIS LYS GLU SEQRES 17 A 255 TYR GLY ILE ASP ILE VAL ILE LEU VAL LEU GLY VAL ASN SEQRES 18 A 255 MSE ASN PRO ASN LYS PRO ASP ALA PHE LYS GLU ASN SER SEQRES 19 A 255 GLU LEU ALA LYS PRO LEU LEU LEU GLU THR TYR HIS SER SEQRES 20 A 255 LEU PHE ASN ALA LEU ASP ASN PHE MODRES 5LW6 MSE A 64 MET MODIFIED RESIDUE MODRES 5LW6 MSE A 65 MET MODIFIED RESIDUE MODRES 5LW6 MSE A 132 MET MODIFIED RESIDUE MODRES 5LW6 MSE A 188 MET MODIFIED RESIDUE HET MSE A 64 8 HET MSE A 65 8 HET MSE A 132 8 HET MSE A 188 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 HOH *103(H2 O) HELIX 1 AA1 ASP A 15 GLU A 19 5 5 HELIX 2 AA2 ASN A 35 HIS A 54 1 20 HELIX 3 AA3 SER A 72 PHE A 83 1 12 HELIX 4 AA4 SER A 101 PHE A 105 5 5 HELIX 5 AA5 THR A 123 GLN A 125 5 3 HELIX 6 AA6 ASN A 126 ASP A 134 1 9 HELIX 7 AA7 ASP A 134 TYR A 146 1 13 HELIX 8 AA8 SER A 169 GLU A 174 1 6 HELIX 9 AA9 LEU A 202 ASN A 220 1 19 SHEET 1 AA1 6 PHE A 91 ILE A 96 0 SHEET 2 AA1 6 LYS A 61 GLU A 67 1 N MSE A 64 O GLU A 92 SHEET 3 AA1 6 SER A 21 PRO A 25 1 N PHE A 24 O MSE A 65 SHEET 4 AA1 6 LEU A 111 GLU A 115 1 O ALA A 113 N ALA A 23 SHEET 5 AA1 6 ILE A 179 VAL A 183 1 O VAL A 183 N THR A 114 SHEET 6 AA1 6 VAL A 155 SER A 159 -1 N ILE A 158 O VAL A 180 LINK C LYS A 63 N MSE A 64 1555 1555 1.32 LINK C MSE A 64 N MSE A 65 1555 1555 1.31 LINK C MSE A 65 N VAL A 66 1555 1555 1.31 LINK C GLU A 131 N MSE A 132 1555 1555 1.32 LINK C MSE A 132 N LEU A 133 1555 1555 1.33 LINK C ASN A 187 N MSE A 188 1555 1555 1.30 LINK C MSE A 188 N ASN A 189 1555 1555 1.35 CRYST1 39.590 71.220 81.890 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025259 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012212 0.00000