HEADER METAL TRANSPORT 16-SEP-16 5LWH TITLE CEUE (Y288F VARIANT) A PERIPLASMIC PROTEIN FROM CAMPYLOBACTER JEJUNI. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENTEROCHELIN ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI; SOURCE 3 ORGANISM_TAXID: 197; SOURCE 4 GENE: A0N86_06545, A0N87_06800; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PERIPLASMIC, IRON-UPTAKE, TETRADENTATE, SIDEROPHORE, MUTATION, METAL KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR E.J.WILDE,E.BLAGOVA,A.HUGHES,D.J.RAINES,O.V.MOROZ,J.TURKENBURG,A.- AUTHOR 2 K.DUHME-KLAIR,K.S.WILSON REVDAT 4 17-JAN-24 5LWH 1 LINK REVDAT 3 13-SEP-17 5LWH 1 REMARK REVDAT 2 19-APR-17 5LWH 1 JRNL REVDAT 1 12-APR-17 5LWH 0 JRNL AUTH E.J.WILDE,A.HUGHES,E.V.BLAGOVA,O.V.MOROZ,R.P.THOMAS, JRNL AUTH 2 J.P.TURKENBURG,D.J.RAINES,A.K.DUHME-KLAIR,K.S.WILSON JRNL TITL INTERACTIONS OF THE PERIPLASMIC BINDING PROTEIN CEUE WITH JRNL TITL 2 FE(III) N-LICAM(4-) SIDEROPHORE ANALOGUES OF VARIED LINKER JRNL TITL 3 LENGTH. JRNL REF SCI REP V. 7 45941 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28383577 JRNL DOI 10.1038/SREP45941 REMARK 2 REMARK 2 RESOLUTION. 1.47 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.47 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 59367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3114 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.47 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4329 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 233 REMARK 3 BIN FREE R VALUE : 0.2610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2231 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 186 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.049 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.049 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.032 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.971 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.979 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2296 ; 0.030 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2225 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3110 ; 2.456 ; 1.985 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5197 ; 1.362 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 297 ; 5.733 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;38.779 ;26.939 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 437 ;12.870 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ; 8.160 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 365 ; 0.189 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2535 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 398 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1164 ; 3.317 ; 2.322 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1163 ; 3.318 ; 2.320 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1457 ; 3.872 ; 3.501 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1458 ; 3.871 ; 3.503 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1132 ; 6.892 ; 2.810 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1132 ; 6.895 ; 2.810 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1649 ; 7.649 ; 4.011 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2592 ; 6.630 ;29.274 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2560 ; 6.635 ;28.953 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4520 ; 6.038 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 126 ;26.024 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 4545 ;15.531 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LWH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001459. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62481 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.470 REMARK 200 RESOLUTION RANGE LOW (A) : 56.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.700 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.47 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.90 REMARK 200 R MERGE FOR SHELL (I) : 1.26700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3ZKW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01M ZNCL2; 0.1M MES, PH 6.0; 20% PEG REMARK 280 6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.10267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.55133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 48.55133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 97.10267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 22 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 121 CE NZ REMARK 470 LYS A 155 NZ REMARK 470 LYS A 161 NZ REMARK 470 LYS A 176 NZ REMARK 470 LYS A 186 NZ REMARK 470 LYS A 196 NZ REMARK 470 LYS A 223 NZ REMARK 470 LYS A 229 NZ REMARK 470 LYS A 277 CE NZ REMARK 470 LYS A 310 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N PHE A 206 O HOH A 501 1.68 REMARK 500 O HOH A 665 O HOH A 679 1.68 REMARK 500 CG1 ILE A 302 O HOH A 670 1.68 REMARK 500 O HOH A 501 O HOH A 647 1.89 REMARK 500 O HOH A 503 O HOH A 644 1.90 REMARK 500 O HOH A 662 O HOH A 669 1.96 REMARK 500 O HOH A 647 O HOH A 659 2.02 REMARK 500 O HOH A 664 O HOH A 669 2.05 REMARK 500 O HOH A 541 O HOH A 679 2.09 REMARK 500 O HOH A 654 O HOH A 659 2.11 REMARK 500 OE1 GLU A 183 O HOH A 502 2.12 REMARK 500 O HOH A 510 O HOH A 652 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 538 O HOH A 677 4545 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 40 CB SER A 40 OG -0.112 REMARK 500 SER A 51 CB SER A 51 OG -0.092 REMARK 500 GLN A 99 CG GLN A 99 CD 0.193 REMARK 500 GLN A 99 CD GLN A 99 OE1 0.145 REMARK 500 ASP A 111 CB ASP A 111 CG -0.193 REMARK 500 SER A 120 CB SER A 120 OG -0.125 REMARK 500 SER A 145 CB SER A 145 OG -0.078 REMARK 500 GLU A 160 CG GLU A 160 CD 0.153 REMARK 500 GLU A 160 CD GLU A 160 OE1 0.155 REMARK 500 GLU A 160 CD GLU A 160 OE2 0.071 REMARK 500 SER A 179 CA SER A 179 CB 0.099 REMARK 500 GLU A 234 CD GLU A 234 OE1 0.083 REMARK 500 ARG A 249 CZ ARG A 249 NH2 -0.091 REMARK 500 GLU A 285 CD GLU A 285 OE1 -0.081 REMARK 500 PHE A 288 CG PHE A 288 CD1 -0.096 REMARK 500 GLU A 296 CD GLU A 296 OE2 0.072 REMARK 500 LYS A 299 CE LYS A 299 NZ 0.183 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 24 CA - CB - CG ANGL. DEV. = 23.5 DEGREES REMARK 500 MET A 28 CG - SD - CE ANGL. DEV. = -10.3 DEGREES REMARK 500 ASP A 30 CB - CG - OD1 ANGL. DEV. = -6.2 DEGREES REMARK 500 LYS A 52 CD - CE - NZ ANGL. DEV. = 17.1 DEGREES REMARK 500 ARG A 118 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 118 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 LEU A 191 CB - CG - CD2 ANGL. DEV. = 11.4 DEGREES REMARK 500 ASP A 219 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 LYS A 306 CD - CE - NZ ANGL. DEV. = -16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 141 60.68 -152.46 REMARK 500 SER A 194 -135.03 54.81 REMARK 500 ASN A 293 31.40 -87.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 686 DISTANCE = 7.05 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 183 OE1 REMARK 620 2 GLU A 183 OE2 62.0 REMARK 620 3 HIS A 227 ND1 36.9 35.4 REMARK 620 4 HOH A 503 O 61.9 117.7 98.6 REMARK 620 5 HOH A 546 O 127.1 68.3 102.5 136.8 REMARK 620 6 HOH A 644 O 89.5 146.3 110.9 52.8 143.3 REMARK 620 7 HOH A 656 O 148.6 97.9 113.1 144.3 52.9 98.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 210 NE2 REMARK 620 2 GLU A 220 OE1 113.1 REMARK 620 3 GLU A 220 OE2 90.5 55.7 REMARK 620 4 GLU A 257 OE1 40.1 86.9 50.4 REMARK 620 5 HOH A 597 O 109.6 119.2 83.5 100.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 DBREF1 5LWH A 24 310 UNP A0A1J6QJN8_CAMJU DBREF2 5LWH A A0A1J6QJN8 41 327 SEQADV 5LWH ALA A 22 UNP A0A1J6QJN EXPRESSION TAG SEQADV 5LWH MET A 23 UNP A0A1J6QJN EXPRESSION TAG SEQADV 5LWH PHE A 288 UNP A0A1J6QJN TYR 305 ENGINEERED MUTATION SEQRES 1 A 289 ALA MET LEU PRO ILE SER MET SER ASP GLU GLY ASP SER SEQRES 2 A 289 PHE LEU VAL LYS ASP SER LEU GLY GLU ASN LYS ILE PRO SEQRES 3 A 289 LYS ASN PRO SER LYS VAL VAL ILE LEU ASP LEU GLY ILE SEQRES 4 A 289 LEU ASP THR PHE ASP ALA LEU LYS LEU ASN ASP LYS VAL SEQRES 5 A 289 VAL GLY VAL PRO ALA LYS ASN LEU PRO LYS TYR LEU GLN SEQRES 6 A 289 GLN PHE LYS ASN LYS PRO SER VAL GLY GLY VAL GLN GLN SEQRES 7 A 289 VAL ASP PHE GLU ALA ILE ASN ALA LEU LYS PRO ASP LEU SEQRES 8 A 289 ILE ILE ILE SER GLY ARG GLN SER LYS PHE TYR ASP LYS SEQRES 9 A 289 LEU LYS GLU ILE ALA PRO THR LEU PHE VAL GLY LEU ASP SEQRES 10 A 289 ASN ALA ASN PHE LEU SER SER PHE GLU ASN ASN VAL LEU SEQRES 11 A 289 SER VAL ALA LYS LEU TYR GLY LEU GLU LYS GLU ALA LEU SEQRES 12 A 289 GLU LYS ILE SER ASP ILE LYS ASN GLU ILE GLU LYS ALA SEQRES 13 A 289 LYS SER ILE VAL ASP GLU ASP LYS LYS ALA LEU ILE ILE SEQRES 14 A 289 LEU THR ASN SER ASN LYS ILE SER ALA PHE GLY PRO GLN SEQRES 15 A 289 SER ARG PHE GLY ILE ILE HIS ASP VAL LEU GLY ILE ASN SEQRES 16 A 289 ALA VAL ASP GLU ASN ILE LYS VAL GLY THR HIS GLY LYS SEQRES 17 A 289 SER ILE ASN SER GLU PHE ILE LEU GLU LYS ASN PRO ASP SEQRES 18 A 289 TYR ILE PHE VAL VAL ASP ARG ASN VAL ILE LEU GLY ASN SEQRES 19 A 289 LYS GLU ARG ALA GLN GLY ILE LEU ASP ASN ALA LEU VAL SEQRES 20 A 289 ALA LYS THR LYS ALA ALA GLN ASN LYS LYS ILE ILE TYR SEQRES 21 A 289 LEU ASP PRO GLU TYR TRP PHE LEU ALA SER GLY ASN GLY SEQRES 22 A 289 LEU GLU SER LEU LYS THR MET ILE LEU GLU ILE LYS ASN SEQRES 23 A 289 ALA VAL LYS HET ZN A 401 1 HET ZN A 402 1 HETNAM ZN ZINC ION FORMUL 2 ZN 2(ZN 2+) FORMUL 4 HOH *186(H2 O) HELIX 1 AA1 ASP A 57 LEU A 67 1 11 HELIX 2 AA2 LEU A 69 ASP A 71 5 3 HELIX 3 AA3 PRO A 77 LEU A 81 5 5 HELIX 4 AA4 PRO A 82 LYS A 89 5 8 HELIX 5 AA5 ASP A 101 LEU A 108 1 8 HELIX 6 AA6 SER A 116 LYS A 121 5 6 HELIX 7 AA7 PHE A 122 GLU A 128 1 7 HELIX 8 AA8 ASN A 141 TYR A 157 1 17 HELIX 9 AA9 LEU A 159 VAL A 181 1 23 HELIX 10 AB1 GLY A 207 VAL A 212 1 6 HELIX 11 AB2 ASN A 232 ASN A 240 1 9 HELIX 12 AB3 ARG A 249 GLY A 254 1 6 HELIX 13 AB4 ARG A 258 LEU A 263 1 6 HELIX 14 AB5 LEU A 267 LYS A 270 5 4 HELIX 15 AB6 THR A 271 ASN A 276 1 6 HELIX 16 AB7 ASP A 283 PHE A 288 1 6 HELIX 17 AB8 GLY A 294 LYS A 310 1 17 SHEET 1 AA1 3 SER A 27 ASP A 30 0 SHEET 2 AA1 3 SER A 34 LYS A 38 -1 O LYS A 38 N SER A 27 SHEET 3 AA1 3 GLU A 43 PRO A 47 -1 O ASN A 44 N VAL A 37 SHEET 1 AA2 4 VAL A 73 GLY A 75 0 SHEET 2 AA2 4 VAL A 53 ILE A 55 1 N VAL A 53 O VAL A 74 SHEET 3 AA2 4 LEU A 112 ILE A 115 1 O LEU A 112 N VAL A 54 SHEET 4 AA2 4 THR A 132 PHE A 134 1 O LEU A 133 N ILE A 115 SHEET 1 AA3 4 ASN A 216 ALA A 217 0 SHEET 2 AA3 4 LYS A 186 ASN A 193 1 N ALA A 187 O ASN A 216 SHEET 3 AA3 4 LYS A 196 PHE A 200 -1 O SER A 198 N LEU A 191 SHEET 4 AA3 4 LYS A 229 ILE A 231 -1 O LYS A 229 N ALA A 199 SHEET 1 AA4 4 ASN A 216 ALA A 217 0 SHEET 2 AA4 4 LYS A 186 ASN A 193 1 N ALA A 187 O ASN A 216 SHEET 3 AA4 4 TYR A 243 ASP A 248 1 O PHE A 245 N ILE A 190 SHEET 4 AA4 4 ILE A 279 LEU A 282 1 O ILE A 280 N ILE A 244 LINK OE1 GLU A 183 ZN ZN A 402 1555 1555 2.31 LINK OE2 GLU A 183 ZN ZN A 402 1555 1555 2.07 LINK NE2 HIS A 210 ZN ZN A 401 1555 1555 1.98 LINK OE1 GLU A 220 ZN ZN A 401 1555 1555 1.95 LINK OE2 GLU A 220 ZN ZN A 401 1555 1555 2.59 LINK ND1 HIS A 227 ZN ZN A 402 1555 5545 2.15 LINK OE1 GLU A 257 ZN ZN A 401 1555 5545 1.96 LINK ZN ZN A 401 O HOH A 597 1555 5445 1.98 LINK ZN ZN A 402 O HOH A 503 1555 1555 2.19 LINK ZN ZN A 402 O HOH A 546 1555 1555 2.68 LINK ZN ZN A 402 O HOH A 644 1555 1555 2.08 LINK ZN ZN A 402 O HOH A 656 1555 1555 2.27 SITE 1 AC1 4 HIS A 210 GLU A 220 GLU A 257 HOH A 597 SITE 1 AC2 6 GLU A 183 HIS A 227 HOH A 503 HOH A 546 SITE 2 AC2 6 HOH A 644 HOH A 656 CRYST1 65.521 65.521 145.654 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015262 0.008812 0.000000 0.00000 SCALE2 0.000000 0.017623 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006866 0.00000