data_5LWJ # _entry.id 5LWJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.314 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 5LWJ WWPDB D_1200001413 BMRB 25661 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 25661 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5LWJ _pdbx_database_status.recvd_initial_deposition_date 2016-09-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wolter, A.C.' 1 'Weickhmann, A.K.' 2 'Nasiri, A.H.' 3 'Hantke, K.' 4 'Ohlenschlaeger, O.' 5 'Wunderlich, C.H.' 6 'Kreutz, C.' 7 'Duchardt-Ferner, E.' 8 'Woehnert, J.' 9 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Angew. Chem. Int. Ed. Engl.' _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 56 _citation.language ? _citation.page_first 401 _citation.page_last 404 _citation.title ;A Stably Protonated Adenine Nucleotide with a Highly Shifted pKa Value Stabilizes the Tertiary Structure of a GTP-Binding RNA Aptamer. ; _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.201609184 _citation.pdbx_database_id_PubMed 27885761 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wolter, A.C.' 1 ? primary 'Weickhmann, A.K.' 2 ? primary 'Nasiri, A.H.' 3 ? primary 'Hantke, K.' 4 ? primary 'Ohlenschlager, O.' 5 ? primary 'Wunderlich, C.H.' 6 ? primary 'Kreutz, C.' 7 ? primary 'Duchardt-Ferner, E.' 8 ? primary 'Wohnert, J.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'GTP Class II RNA (34-MER)' 11016.671 1 ? ? ? 'AP7 N1-protonated adenine' 2 non-polymer syn "GUANOSINE-5'-TRIPHOSPHATE" 523.180 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GGCAGCCAGA(AP7)GAGCACGUAUACGCAAGGCUGUC' _entity_poly.pdbx_seq_one_letter_code_can GGCAGCCAGAAGAGCACGUAUACGCAAGGCUGUC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 C n 1 4 A n 1 5 G n 1 6 C n 1 7 C n 1 8 A n 1 9 G n 1 10 A n 1 11 AP7 n 1 12 G n 1 13 A n 1 14 G n 1 15 C n 1 16 A n 1 17 C n 1 18 G n 1 19 U n 1 20 A n 1 21 U n 1 22 A n 1 23 C n 1 24 G n 1 25 C n 1 26 A n 1 27 A n 1 28 G n 1 29 G n 1 30 C n 1 31 U n 1 32 G n 1 33 U n 1 34 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 34 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details SELEX # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5LWJ _struct_ref.pdbx_db_accession 5LWJ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5LWJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 34 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5LWJ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 34 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 34 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 AP7 'RNA linking' n ;N1-PROTONATED ADENOSINE-5'-MONOPHOSPHATE ; ? 'C10 H15 N5 O7 P 1' 348.229 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 5 isotropic 2 1 8 '3D 1H-13C NOESY aliphatic' 6 isotropic 3 1 12 '3D 1H-13C NOESY aliphatic3D 1H-13C NOESY aliphatic' 5 isotropic 4 1 10 '3D 1H-13C NOESY aliphatic' 5 isotropic 5 1 7 '2D 1H-13C NOESY aromatic' 5 isotropic 6 1 11 '2D 2D 1H-13C NOESY aromatic' 4 isotropic 7 1 9 '3D 1H-13C NOESY aromatic' 5 isotropic 8 1 8 '3D HCCH-TOCSY' 2 isotropic 9 1 12 '3D HCCH-TOCSY' 2 isotropic 10 1 10 '3D HCCH-TOCSY' 2 isotropic 11 1 8 '3D HCCH-COSY' 2 isotropic 12 1 12 '3D HCCH-COSY' 2 isotropic 13 1 10 '3D HCCH-COSY' 2 isotropic 14 2 4 '2D 1H-15N HNN-COSY' 2 isotropic 15 1 12 '2D 1H-13C HNCO' 6 isotropic 16 1 9 '2D 1H-13C H5(6)C5(6)C4NH3' 7 isotropic 17 1 9 '2D 1H-13C H5(6)C5(6)C4N4H4' 7 isotropic 18 1 8 '2D 1H-15N HCN aromatic' 2 isotropic 19 1 12 '2D 1H-15N HCN aromatic' 2 isotropic 20 1 10 '2D 1H-15N HCN aromatic' 6 isotropic 21 1 8 '2D 1H-15N HCN aliphatic' 2 isotropic 22 1 12 '2D 1H-15N HCN aliphatic' 2 isotropic 23 1 10 '2D 1H-15N HCN aliphatic' 6 isotropic 24 1 4 'D 1H-15N 2bond-HSQC' 2 isotropic 25 1 8 '2D 1H-1H HCCH-TOCSY (adenine)' 2 isotropic 26 1 8 '2D 1H-31P H(C)P' 2 isotropic 27 1 12 '2D 1H-31P H(C)P' 2 isotropic 28 1 10 '2D 1H-31P H(C)P' 2 isotropic 29 1 2 '2D HCCH-COSY' 2 isotropic 30 1 11 '2D 1H-13C long-rangeH8(C8)C5(N1)H1' 2 isotropic 31 1 4 '2D CMPG NOESY' 6 isotropic 32 1 2 '3D 1H-13C NOESY aliphatic' 6 isotropic 33 1 1 '3D 1H-13C NOESY aromatic' 5 isotropic 34 1 13 lr-2D-HNN-COSY 2 isotropic 35 1 13 '2D-HNN-COSY NH2' 2 isotropic 36 1 8 '3D 13C-F1 filtered, 13C-F3-edited NOESY HSQC' 6 isotropic 37 1 12 '3D 13C-F1 filtered, 13C-F3-edited NOESY HSQC' 5 isotropic 38 1 10 '3D 13C-F1 filtered, 13C-F3-edited NOESY HSQC' 6 isotropic 39 2 4 '2D 1H-15N HSQC' 2 isotropic 40 2 4 '2D 1H-15N HSQC NH2 only' 6 isotropic 41 1 6 '2D 1H-13C HSQC aromatic' 4 isotropic 42 1 6 '2D 1H-13C HSQC aliphatic' 6 isotropic 43 1 3 '2D 15N-F2 edited 1H,1H NOESY' 6 isotropic 44 1 8 '3D HCCH-TOCSY-CCH-E.COSY' 2 isotropic 45 1 10 '3D HCCH-TOCSY-CCH-E.COSY' 2 isotropic 46 1 12 '3D HCCH-TOCSY-CCH-E.COSY' 2 isotropic # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.details _pdbx_nmr_exptl_sample_conditions.ionic_strength_err _pdbx_nmr_exptl_sample_conditions.ionic_strength_units _pdbx_nmr_exptl_sample_conditions.label _pdbx_nmr_exptl_sample_conditions.pH_err _pdbx_nmr_exptl_sample_conditions.pH_units _pdbx_nmr_exptl_sample_conditions.pressure_err _pdbx_nmr_exptl_sample_conditions.temperature_err _pdbx_nmr_exptl_sample_conditions.temperature_units 1 293 atm 1 6.3 'potassium chloride (25)' 'standard NMR-buffer pH 6.3, 293 K' ? mM conditions_1 ? pH ? ? K 2 283 atm 1 6.3 'potassium chloride (25)' 'standard NMR-buffer pH 6.3, 283 K' ? mM conditions_2 ? pH ? ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;0.66 mM GTP Class II RNA (34-MER), 1.32 mM [U-99% 13C; U-99% 15N] GTP, 2 mM magnesium acetate, 25 mM potassium phosphate, 25 mM potassium chloride, 95 % H2O, 5 % D2O, 95% H2O/5% D2O ; '95% H2O/5% D2O' RNAunl_H2O solution 'GTP Cl II unlabeled' 2 ;0.66 mM GTP Class II RNA (34-MER), 1.32 mM [U-99% 13C; U-99% 15N] GTP, 2 mM magnesium acetate, 25 mM potassium phosphate, 25 mM potassium chloride, 100 % D2O, 100% D2O ; '100% D2O' RNA_unl_D2O solution 'GTP Cl II unlabeled' 3 ;0.9 mM GTP Class II RNA (34-MER), 1.8 mM [U-99% 13C; U-99% 15N] GTP, 2 mM magnesium acetate, 25 mM potassium phosphate, 25 mM potassium chloride, 95 % H2O, 5 % D2O, 95% H2O/5% D2O ; '95% H2O/5% D2O' RNA_unl_H2O_2 solution 'GTP Cl II unlabeled' 4 ;0.5 mM [U-99% 15N] GTP Class II RNA (34-MER), 1 mM [U-99% 13C; U-99% 15N] GTP, 2 mM magnesium phosphate, 25 mM potassium phosphate, 25 mM potassium chloride, 95 % H2O, 5 % D2O, 95% H2O/5% D2O ; '95% H2O/5% D2O' 15N_RNA solution 'GTP Cl II 15N uniformly labeled' 5 ;0.36 mM [U-99% 13C; U-99% 15N] GTP Class II RNA (34-MER), 0.72 mM GTP, 2 mM magnesium acetate, 25 mM potassium phosphate, 25 mM potassium chloride, 90 % H2O, 10 % D2O, 90% H2O/10% D2O ; '90% H2O/10% D2O' 13C15N_RNA_H2O solution 'GTP Cl II 13C15N uniformly labeled' 6 ;1.2 mM [U-99% 13C; U-99% 15N] GTP Class II RNA (34-MER), 2.4 mM GTP, 2 mM magnesium acetate, 25 mM potassium phosphate, 25 mM potassium chloride, 100 % D2O, 100% D2O ; '100% D2O' 13C15NRNA_D2O solution 'GTP Cl II 13C15N uniformly labeled' 7 ;1.1 mM [U-13C; U-15N]-Ade GTP Class II RNA (34-MER), 2.2 mM [U-99% 13C; U-99% 15N] GTP, 2 mM magnesium acetate, 25 mM potassium phosphate, 25 mM potassium chloride, 95 % H2O, 5 % D2O, 95% H2O/5% D2O ; '95% H2O/5% D2O' Ade_H2O solution 'GTP Cl II 13C15N-Ade labeled' 8 ;1.1 mM [U-13C; U-15N]-Ade GTP Class II RNA (34-MER), 2.2 mM [U-99% 13C; U-99% 15N] GTP, 2 mM magnesium acetate, 25 mM potassium phosphate, 25 mM potassium chloride, 100 % D2O, 100% D2O ; '100% D2O' Ade_D2O solution 'GTP Cl II 13C15N-Ade labeled' 9 ;0.73 mM [U-13C; U-15N]-Cyt GTP Class II RNA (34-MER), 1.46 mM [U-99% 15N] GTP, 2 mM magnesium acetate, 25 mM potassium phosphate, 25 mM potassium chloride, 95 % H2O, 5 % D2O, 95% H2O/5% D2O ; '95% H2O/5% D2O' Cyt_H2O solution 'GTP Cl II 13C15N-Cyt labeled' 10 ;0.73 mM [U-13C; U-15N]-Cyt GTP Class II RNA (34-MER), 1.46 mM [U-99% 15N] GTP, 2 mM magnesium acetate, 25 mM potassium phosphate, 25 mM potassium chloride, 100 % D2O, 100% D2O ; '100% D2O' Cyt_D2O solution 'GTP Cl II 13C15N-Cyt labeled' 11 ;0.82 mM [U-13C; U-15N]-Gua, [U-13C; U-15N]-Ura GTP Class II RNA (34-MER), 1.64 mM [U-99% 15N] GTP, 2 mM magnesium acetate, 25 mM potassium phosphate, 25 mM potassium chloride, 25 mM H2O, 100 % D2O, 95% H2O/5% D2O ; '95% H2O/5% D2O' GU_H2O solution 'GTP Cl II 13C15N-GuaUri labeled' 12 ;0.82 mM [U-13C; U-15N]-Gua, [U-13C; U-15N]-Ura GTP Class II RNA (34-MER), 1.64 mM [U-99% 15N] GTP, 2 mM magnesium acetate, 25 mM potassium phosphate, 25 mM potassium chloride, 100 % D2O, 100% D2O ; '100% D2O' GU_D2O solution 'GTP Cl II 13C15N-GuaUri labeled' 13 ;1.3 mM [U-15N]-Gua, [U-15N]-Ade GTP Class II RNA (34-MER), 2.6 mM [U-99% 15N] GTP, 2 mM magnesium acetate, 25 mM potassium phosphate, 25 mM potassium chloride, 95 % H2O, 5 % D2O, 95% H2O/5% D2O ; '95% H2O/5% D2O' 15N-G/A solution 'GTP Cl II 15N-GuaAde labeled' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 2 AVANCE ? Bruker 600 'cryogenic probehead' 7 AVANCE ? Bruker 700 'cryogenic probehead' 6 AVANCE ? Bruker 800 'cryogenic probehead' 5 AVANCE ? Bruker 900 'cryogenic probehead' 4 AVANCE ? Bruker 950 'cryogenic probehead' # _pdbx_nmr_refine.entry_id 5LWJ _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 9 # _pdbx_nmr_ensemble.entry_id 5LWJ _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'target function' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5LWJ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'target function' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 4 collection TopSpin 3.5 'Bruker Biospin' 5 processing TopSpin 3.5 'Bruker Biospin' 10 'data analysis' TopSpin 3.5 'Bruker Biospin' 6 'chemical shift assignment' CARA 1.8.4.2 'Keller and Wuthrich' 7 'peak picking' CARA 1.8.4.2 'Keller and Wuthrich' 8 'structure calculation' CYANA 3.97 'Guntert, Mumenthaler and Wuthrich' 9 refinement OPAL ? 'Luginbuhl, Guntert, Billeter, Wuthrich' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5LWJ _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5LWJ _struct.title ;Solution NMR structure of the GTP binding Class II RNA aptamer-ligand-complex containing a protonated adenine nucleotide with a highly shifted pKa. ; _struct.pdbx_descriptor 'GTP Class II RNA (34-MER)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5LWJ _struct_keywords.text 'RNA structure, aptamer, protonated adenine, GTP, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A A 10 "O3'" ? ? ? 1_555 A AP7 11 P ? ? A A 10 A AP7 11 1_555 ? ? ? ? ? ? ? 1.631 ? covale2 covale both ? A AP7 11 "O3'" ? ? ? 1_555 A G 12 P ? ? A AP7 11 A G 12 1_555 ? ? ? ? ? ? ? 1.622 ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 34 N3 ? ? A G 1 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 34 O2 ? ? A G 1 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 34 N4 ? ? A G 1 A C 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A U 33 O2 ? ? A G 2 A U 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A U 33 N3 ? ? A G 2 A U 33 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog6 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 32 N1 ? ? A C 3 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 32 O6 ? ? A C 3 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 3 A G 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 31 N3 ? ? A A 4 A U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 31 O4 ? ? A A 4 A U 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 5 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 5 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 5 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 6 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 6 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 6 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 7 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 7 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 7 A G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A A 8 N1 ? ? ? 1_555 A A 27 N6 ? ? A A 8 A A 27 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? hydrog21 hydrog ? ? A A 8 N6 ? ? ? 1_555 A A 27 N1 ? ? A A 8 A A 27 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? hydrog22 hydrog ? ? A G 9 N7 ? ? ? 1_555 A AP7 11 N6 ? ? A G 9 A AP7 11 1_555 ? ? ? ? ? ? 'G-AP7 MISPAIR' ? ? hydrog23 hydrog ? ? A AP7 11 N6 ? ? ? 1_555 A G 24 N7 ? ? A AP7 11 A G 24 1_555 ? ? ? ? ? ? 'AP7-G MISPAIR' ? ? hydrog24 hydrog ? ? A AP7 11 N1 ? ? ? 1_555 A C 25 N4 ? ? A AP7 11 A C 25 1_555 ? ? ? ? ? ? 'AP7-C MISPAIR' ? ? hydrog25 hydrog ? ? A G 12 N2 ? ? ? 1_555 A A 16 N1 ? ? A G 12 A A 16 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? hydrog26 hydrog ? ? A G 12 N3 ? ? ? 1_555 A A 16 N6 ? ? A G 12 A A 16 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? hydrog27 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 23 N3 ? ? A G 12 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 23 O2 ? ? A G 12 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 23 N4 ? ? A G 12 A C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 14 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 14 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 14 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 15 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 15 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 15 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A G 18 N2 ? ? ? 1_555 A A 20 N1 ? ? A G 18 A A 20 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id GTP _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'binding site for residue GTP A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 G A 12 ? G A 12 . ? 1_555 ? 2 AC1 6 A A 16 ? A A 16 . ? 1_555 ? 3 AC1 6 C A 17 ? C A 17 . ? 1_555 ? 4 AC1 6 G A 18 ? G A 18 . ? 1_555 ? 5 AC1 6 A A 20 ? A A 20 . ? 1_555 ? 6 AC1 6 A A 22 ? A A 22 . ? 1_555 ? # _atom_sites.entry_id 5LWJ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 C 3 3 3 C C A . n A 1 4 A 4 4 4 A A A . n A 1 5 G 5 5 5 G G A . n A 1 6 C 6 6 6 C C A . n A 1 7 C 7 7 7 C C A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 A 10 10 10 A A A . n A 1 11 AP7 11 11 11 AP7 AP7 A . n A 1 12 G 12 12 12 G G A . n A 1 13 A 13 13 13 A A A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n A 1 16 A 16 16 16 A A A . n A 1 17 C 17 17 17 C C A . n A 1 18 G 18 18 18 G G A . n A 1 19 U 19 19 19 U U A . n A 1 20 A 20 20 20 A A A . n A 1 21 U 21 21 21 U U A . n A 1 22 A 22 22 22 A A A . n A 1 23 C 23 23 23 C C A . n A 1 24 G 24 24 24 G G A . n A 1 25 C 25 25 25 C C A . n A 1 26 A 26 26 26 A A A . n A 1 27 A 27 27 27 A A A . n A 1 28 G 28 28 28 G G A . n A 1 29 G 29 29 29 G G A . n A 1 30 C 30 30 30 C C A . n A 1 31 U 31 31 31 U U A . n A 1 32 G 32 32 32 G G A . n A 1 33 U 33 33 33 U U A . n A 1 34 C 34 34 34 C C A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id GTP _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 101 _pdbx_nonpoly_scheme.pdb_mon_id GTP _pdbx_nonpoly_scheme.auth_mon_id GTP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1070 ? 1 MORE 9 ? 1 'SSA (A^2)' 6660 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-12-14 2 'Structure model' 1 1 2017-01-11 3 'Structure model' 1 2 2019-05-08 4 'Structure model' 1 3 2019-09-18 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' ndb_struct_na_base_pair 2 3 'Structure model' pdbx_audit_support 3 3 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_ndb_struct_na_base_pair.hbond_type_12' 2 3 'Structure model' '_pdbx_audit_support.funding_organization' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'GTP Class II RNA (34-MER)' 0.66 ? mM 'natural abundance' 1 GTP 1.32 ? mM '[U-99% 13C; U-99% 15N]' 1 'magnesium acetate' 2 ? mM 'natural abundance' 1 'potassium phosphate' 25 ? mM 'natural abundance' 1 'potassium chloride' 25 ? mM 'natural abundance' 1 H2O 95 ? % 'natural abundance' 1 D2O 5 ? % 'natural abundance' 2 'GTP Class II RNA (34-MER)' 0.66 ? mM 'natural abundance' 2 GTP 1.32 ? mM '[U-99% 13C; U-99% 15N]' 2 'magnesium acetate' 2 ? mM 'natural abundance' 2 'potassium phosphate' 25 ? mM 'natural abundance' 2 'potassium chloride' 25 ? mM 'natural abundance' 2 D2O 100 ? % 'natural abundance' 3 'GTP Class II RNA (34-MER)' 0.9 ? mM 'natural abundance' 3 GTP 1.8 ? mM '[U-99% 13C; U-99% 15N]' 3 'magnesium acetate' 2 ? mM 'natural abundance' 3 'potassium phosphate' 25 ? mM 'natural abundance' 3 'potassium chloride' 25 ? mM 'natural abundance' 3 H2O 95 ? % 'natural abundance' 3 D2O 5 ? % 'natural abundance' 4 'GTP Class II RNA (34-MER)' 0.5 ? mM '[U-99% 15N]' 4 GTP 1 ? mM '[U-99% 13C; U-99% 15N]' 4 'magnesium phosphate' 2 ? mM 'natural abundance' 4 'potassium phosphate' 25 ? mM 'natural abundance' 4 'potassium chloride' 25 ? mM 'natural abundance' 4 H2O 95 ? % 'natural abundance' 4 D2O 5 ? % 'natural abundance' 5 'GTP Class II RNA (34-MER)' 0.36 ? mM '[U-99% 13C; U-99% 15N]' 5 GTP 0.72 ? mM 'natural abundance' 5 'magnesium acetate' 2 ? mM 'natural abundance' 5 'potassium phosphate' 25 ? mM 'natural abundance' 5 'potassium chloride' 25 ? mM 'natural abundance' 5 H2O 90 ? % 'natural abundance' 5 D2O 10 ? % 'natural abundance' 6 'GTP Class II RNA (34-MER)' 1.2 ? mM '[U-99% 13C; U-99% 15N]' 6 GTP 2.4 ? mM 'natural abundance' 6 'magnesium acetate' 2 ? mM 'natural abundance' 6 'potassium phosphate' 25 ? mM 'natural abundance' 6 'potassium chloride' 25 ? mM 'natural abundance' 6 D2O 100 ? % 'natural abundance' 7 'GTP Class II RNA (34-MER)' 1.1 ? mM '[U-13C; U-15N]-Ade' 7 GTP 2.2 ? mM '[U-99% 13C; U-99% 15N]' 7 'magnesium acetate' 2 ? mM 'natural abundance' 7 'potassium phosphate' 25 ? mM 'natural abundance' 7 'potassium chloride' 25 ? mM 'natural abundance' 7 H2O 95 ? % 'natural abundance' 7 D2O 5 ? % 'natural abundance' 8 'GTP Class II RNA (34-MER)' 1.1 ? mM '[U-13C; U-15N]-Ade' 8 GTP 2.2 ? mM '[U-99% 13C; U-99% 15N]' 8 'magnesium acetate' 2 ? mM 'natural abundance' 8 'potassium phosphate' 25 ? mM 'natural abundance' 8 'potassium chloride' 25 ? mM 'natural abundance' 8 D2O 100 ? % 'natural abundance' 9 'GTP Class II RNA (34-MER)' 0.73 ? mM '[U-13C; U-15N]-Cyt' 9 GTP 1.46 ? mM '[U-99% 15N]' 9 'magnesium acetate' 2 ? mM 'natural abundance' 9 'potassium phosphate' 25 ? mM 'natural abundance' 9 'potassium chloride' 25 ? mM 'natural abundance' 9 H2O 95 ? % 'natural abundance' 9 D2O 5 ? % 'natural abundance' 10 'GTP Class II RNA (34-MER)' 0.73 ? mM '[U-13C; U-15N]-Cyt' 10 GTP 1.46 ? mM '[U-99% 15N]' 10 'magnesium acetate' 2 ? mM 'natural abundance' 10 'potassium phosphate' 25 ? mM 'natural abundance' 10 'potassium chloride' 25 ? mM 'natural abundance' 10 D2O 100 ? % 'natural abundance' 11 'GTP Class II RNA (34-MER)' 0.82 ? mM '[U-13C; U-15N]-Gua, [U-13C; U-15N]-Ura' 11 GTP 1.64 ? mM '[U-99% 15N]' 11 'magnesium acetate' 2 ? mM 'natural abundance' 11 'potassium phosphate' 25 ? mM 'natural abundance' 11 'potassium chloride' 25 ? mM 'natural abundance' 11 H2O 25 ? mM 'natural abundance' 11 D2O 100 ? % 'natural abundance' 12 'GTP Class II RNA (34-MER)' 0.82 ? mM '[U-13C; U-15N]-Gua, [U-13C; U-15N]-Ura' 12 GTP 1.64 ? mM '[U-99% 15N]' 12 'magnesium acetate' 2 ? mM 'natural abundance' 12 'potassium phosphate' 25 ? mM 'natural abundance' 12 'potassium chloride' 25 ? mM 'natural abundance' 12 D2O 100 ? % 'natural abundance' 13 'GTP Class II RNA (34-MER)' 1.3 ? mM '[U-15N]-Gua, [U-15N]-Ade' 13 GTP 2.6 ? mM '[U-99% 15N]' 13 'magnesium acetate' 2 ? mM 'natural abundance' 13 'potassium phosphate' 25 ? mM 'natural abundance' 13 'potassium chloride' 25 ? mM 'natural abundance' 13 H2O 95 ? % 'natural abundance' 13 D2O 5 ? % 'natural abundance' # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 4 _pdbx_validate_close_contact.auth_atom_id_1 "HO2'" _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 C _pdbx_validate_close_contact.auth_seq_id_1 7 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OP1 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 A _pdbx_validate_close_contact.auth_seq_id_2 8 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.60 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 113.18 108.50 4.68 0.70 N 2 1 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 116.10 108.50 7.60 0.70 N 3 1 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.77 108.50 4.27 0.70 N 4 1 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 113.12 108.50 4.62 0.70 N 5 1 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 114.86 108.50 6.36 0.70 N 6 1 "O4'" A A 13 ? ? "C1'" A A 13 ? ? N9 A A 13 ? ? 115.25 108.50 6.75 0.70 N 7 1 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 112.96 108.50 4.46 0.70 N 8 1 "O4'" A G 18 ? ? "C1'" A G 18 ? ? N9 A G 18 ? ? 113.23 108.50 4.73 0.70 N 9 1 "O4'" A C 23 ? ? "C1'" A C 23 ? ? N1 A C 23 ? ? 113.39 108.50 4.89 0.70 N 10 1 "O4'" A G 24 ? ? "C1'" A G 24 ? ? N9 A G 24 ? ? 113.26 108.50 4.76 0.70 N 11 1 "O4'" A C 25 ? ? "C1'" A C 25 ? ? N1 A C 25 ? ? 113.80 108.50 5.30 0.70 N 12 1 "O4'" A A 26 ? ? "C1'" A A 26 ? ? N9 A A 26 ? ? 114.86 108.50 6.36 0.70 N 13 1 "O4'" A U 31 ? ? "C1'" A U 31 ? ? N1 A U 31 ? ? 113.89 108.50 5.39 0.70 N 14 1 "O4'" A C 34 ? ? "C1'" A C 34 ? ? N1 A C 34 ? ? 112.85 108.50 4.35 0.70 N 15 2 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 113.29 108.50 4.79 0.70 N 16 2 "O4'" A C 7 ? ? "C1'" A C 7 ? ? N1 A C 7 ? ? 113.31 108.50 4.81 0.70 N 17 2 "O4'" A A 13 ? ? "C1'" A A 13 ? ? N9 A A 13 ? ? 114.38 108.50 5.88 0.70 N 18 2 "O4'" A G 14 ? ? "C1'" A G 14 ? ? N9 A G 14 ? ? 112.72 108.50 4.22 0.70 N 19 2 N3 A G 14 ? ? C2 A G 14 ? ? N2 A G 14 ? ? 115.58 119.90 -4.32 0.70 N 20 2 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 113.28 108.50 4.78 0.70 N 21 2 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 112.79 108.50 4.29 0.70 N 22 2 "O4'" A G 18 ? ? "C1'" A G 18 ? ? N9 A G 18 ? ? 112.75 108.50 4.25 0.70 N 23 2 N3 A G 18 ? ? C2 A G 18 ? ? N2 A G 18 ? ? 115.44 119.90 -4.46 0.70 N 24 2 "O4'" A A 20 ? ? "C1'" A A 20 ? ? N9 A A 20 ? ? 113.63 108.50 5.13 0.70 N 25 2 "O4'" A C 23 ? ? "C1'" A C 23 ? ? N1 A C 23 ? ? 114.38 108.50 5.88 0.70 N 26 2 "O4'" A A 26 ? ? "C1'" A A 26 ? ? N9 A A 26 ? ? 113.74 108.50 5.24 0.70 N 27 2 "O4'" A G 29 ? ? "C1'" A G 29 ? ? N9 A G 29 ? ? 113.07 108.50 4.57 0.70 N 28 2 "O4'" A U 31 ? ? "C1'" A U 31 ? ? N1 A U 31 ? ? 112.78 108.50 4.28 0.70 N 29 2 "O4'" A C 34 ? ? "C1'" A C 34 ? ? N1 A C 34 ? ? 115.22 108.50 6.72 0.70 N 30 3 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.04 108.50 4.54 0.70 N 31 3 "O4'" A A 4 ? ? "C1'" A A 4 ? ? N9 A A 4 ? ? 113.90 108.50 5.40 0.70 N 32 3 "O4'" A G 5 ? ? "C1'" A G 5 ? ? N9 A G 5 ? ? 114.99 108.50 6.49 0.70 N 33 3 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 112.96 108.50 4.46 0.70 N 34 3 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 113.79 108.50 5.29 0.70 N 35 3 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 113.90 108.50 5.40 0.70 N 36 3 "O4'" A G 18 ? ? "C1'" A G 18 ? ? N9 A G 18 ? ? 114.73 108.50 6.23 0.70 N 37 3 "O4'" A C 23 ? ? "C1'" A C 23 ? ? N1 A C 23 ? ? 113.46 108.50 4.96 0.70 N 38 3 "O4'" A C 30 ? ? "C1'" A C 30 ? ? N1 A C 30 ? ? 112.80 108.50 4.30 0.70 N 39 3 "O4'" A U 31 ? ? "C1'" A U 31 ? ? N1 A U 31 ? ? 113.81 108.50 5.31 0.70 N 40 3 "O4'" A C 34 ? ? "C1'" A C 34 ? ? N1 A C 34 ? ? 113.81 108.50 5.31 0.70 N 41 4 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.84 108.50 4.34 0.70 N 42 4 N3 A G 2 ? ? C2 A G 2 ? ? N2 A G 2 ? ? 115.31 119.90 -4.59 0.70 N 43 4 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.42 108.50 4.92 0.70 N 44 4 "O4'" A C 7 ? ? "C1'" A C 7 ? ? N1 A C 7 ? ? 113.31 108.50 4.81 0.70 N 45 4 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 115.28 108.50 6.78 0.70 N 46 4 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 113.44 108.50 4.94 0.70 N 47 4 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 114.07 108.50 5.57 0.70 N 48 4 C5 A A 20 ? ? C6 A A 20 ? ? N1 A A 20 ? ? 121.08 117.70 3.38 0.50 N 49 4 "O4'" A U 21 ? ? "C1'" A U 21 ? ? N1 A U 21 ? ? 113.45 108.50 4.95 0.70 N 50 4 "O4'" A C 23 ? ? "C1'" A C 23 ? ? N1 A C 23 ? ? 113.53 108.50 5.03 0.70 N 51 4 "O4'" A G 24 ? ? "C1'" A G 24 ? ? N9 A G 24 ? ? 113.04 108.50 4.54 0.70 N 52 4 "O4'" A U 31 ? ? "C1'" A U 31 ? ? N1 A U 31 ? ? 113.23 108.50 4.73 0.70 N 53 4 "O4'" A G 32 ? ? "C1'" A G 32 ? ? N9 A G 32 ? ? 113.26 108.50 4.76 0.70 N 54 4 "O4'" A C 34 ? ? "C1'" A C 34 ? ? N1 A C 34 ? ? 113.98 108.50 5.48 0.70 N 55 4 N1 A C 34 ? ? C2 A C 34 ? ? O2 A C 34 ? ? 122.52 118.90 3.62 0.60 N 56 4 N3 A C 34 ? ? C2 A C 34 ? ? O2 A C 34 ? ? 117.64 121.90 -4.26 0.70 N 57 5 "O4'" A G 1 ? ? "C1'" A G 1 ? ? N9 A G 1 ? ? 113.42 108.50 4.92 0.70 N 58 5 "O4'" A G 5 ? ? "C1'" A G 5 ? ? N9 A G 5 ? ? 113.29 108.50 4.79 0.70 N 59 5 "C3'" A G 9 ? ? "C2'" A G 9 ? ? "C1'" A G 9 ? ? 96.72 101.30 -4.58 0.70 N 60 5 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 115.77 108.50 7.27 0.70 N 61 5 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 113.63 108.50 5.13 0.70 N 62 5 "C3'" A U 21 ? ? "C2'" A U 21 ? ? "C1'" A U 21 ? ? 96.91 101.30 -4.39 0.70 N 63 5 "O4'" A U 21 ? ? "C1'" A U 21 ? ? N1 A U 21 ? ? 114.77 108.50 6.27 0.70 N 64 5 "O4'" A C 23 ? ? "C1'" A C 23 ? ? N1 A C 23 ? ? 113.83 108.50 5.33 0.70 N 65 5 "O4'" A A 26 ? ? "C1'" A A 26 ? ? N9 A A 26 ? ? 113.21 108.50 4.71 0.70 N 66 5 "O4'" A C 30 ? ? "C1'" A C 30 ? ? N1 A C 30 ? ? 113.29 108.50 4.79 0.70 N 67 5 "O4'" A U 31 ? ? "C1'" A U 31 ? ? N1 A U 31 ? ? 113.33 108.50 4.83 0.70 N 68 5 "O4'" A C 34 ? ? "C1'" A C 34 ? ? N1 A C 34 ? ? 113.92 108.50 5.42 0.70 N 69 6 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 112.75 108.50 4.25 0.70 N 70 6 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 114.35 108.50 5.85 0.70 N 71 6 N3 A C 3 ? ? C2 A C 3 ? ? O2 A C 3 ? ? 117.44 121.90 -4.46 0.70 N 72 6 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 116.72 108.50 8.22 0.70 N 73 6 "O4'" A A 13 ? ? "C1'" A A 13 ? ? N9 A A 13 ? ? 114.88 108.50 6.38 0.70 N 74 6 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 113.61 108.50 5.11 0.70 N 75 6 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 112.75 108.50 4.25 0.70 N 76 6 "O4'" A C 23 ? ? "C1'" A C 23 ? ? N1 A C 23 ? ? 113.33 108.50 4.83 0.70 N 77 6 "O4'" A C 25 ? ? "C1'" A C 25 ? ? N1 A C 25 ? ? 114.60 108.50 6.10 0.70 N 78 6 "O4'" A G 28 ? ? "C1'" A G 28 ? ? N9 A G 28 ? ? 112.98 108.50 4.48 0.70 N 79 6 "O4'" A U 31 ? ? "C1'" A U 31 ? ? N1 A U 31 ? ? 112.87 108.50 4.37 0.70 N 80 6 "O4'" A C 34 ? ? "C1'" A C 34 ? ? N1 A C 34 ? ? 114.28 108.50 5.78 0.70 N 81 6 N3 A C 34 ? ? C2 A C 34 ? ? O2 A C 34 ? ? 117.39 121.90 -4.51 0.70 N 82 7 N3 A C 3 ? ? C2 A C 3 ? ? O2 A C 3 ? ? 117.61 121.90 -4.29 0.70 N 83 7 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 113.76 108.50 5.26 0.70 N 84 7 "O4'" A C 23 ? ? "C1'" A C 23 ? ? N1 A C 23 ? ? 113.92 108.50 5.42 0.70 N 85 7 "O4'" A C 25 ? ? "C1'" A C 25 ? ? N1 A C 25 ? ? 112.83 108.50 4.33 0.70 N 86 7 "O4'" A G 29 ? ? "C1'" A G 29 ? ? N9 A G 29 ? ? 114.06 108.50 5.56 0.70 N 87 7 "O4'" A C 34 ? ? "C1'" A C 34 ? ? N1 A C 34 ? ? 112.81 108.50 4.31 0.70 N 88 7 N1 A C 34 ? ? C2 A C 34 ? ? O2 A C 34 ? ? 122.87 118.90 3.97 0.60 N 89 8 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 112.77 108.50 4.27 0.70 N 90 8 N3 A C 3 ? ? C2 A C 3 ? ? O2 A C 3 ? ? 117.69 121.90 -4.21 0.70 N 91 8 "O4'" A G 9 ? ? "C1'" A G 9 ? ? N9 A G 9 ? ? 113.22 108.50 4.72 0.70 N 92 8 N3 A G 12 ? ? C4 A G 12 ? ? C5 A G 12 ? ? 125.54 128.60 -3.06 0.50 N 93 8 "O4'" A A 13 ? ? "C1'" A A 13 ? ? N9 A A 13 ? ? 113.83 108.50 5.33 0.70 N 94 8 "O4'" A C 15 ? ? "C1'" A C 15 ? ? N1 A C 15 ? ? 112.75 108.50 4.25 0.70 N 95 8 "O4'" A C 17 ? ? "C1'" A C 17 ? ? N1 A C 17 ? ? 114.23 108.50 5.73 0.70 N 96 8 "O4'" A G 18 ? ? "C1'" A G 18 ? ? N9 A G 18 ? ? 113.18 108.50 4.68 0.70 N 97 8 "O4'" A A 20 ? ? "C1'" A A 20 ? ? N9 A A 20 ? ? 114.20 108.50 5.70 0.70 N 98 8 "O4'" A U 21 ? ? "C1'" A U 21 ? ? N1 A U 21 ? ? 112.95 108.50 4.45 0.70 N 99 8 "O4'" A C 23 ? ? "C1'" A C 23 ? ? N1 A C 23 ? ? 113.73 108.50 5.23 0.70 N 100 8 "O4'" A G 24 ? ? "C1'" A G 24 ? ? N9 A G 24 ? ? 114.23 108.50 5.73 0.70 N 101 8 "O4'" A C 25 ? ? "C1'" A C 25 ? ? N1 A C 25 ? ? 114.42 108.50 5.92 0.70 N 102 8 "O4'" A C 30 ? ? "C1'" A C 30 ? ? N1 A C 30 ? ? 113.24 108.50 4.74 0.70 N 103 8 "O4'" A C 34 ? ? "C1'" A C 34 ? ? N1 A C 34 ? ? 113.64 108.50 5.14 0.70 N 104 9 "O4'" A C 6 ? ? "C1'" A C 6 ? ? N1 A C 6 ? ? 112.80 108.50 4.30 0.70 N 105 9 "O4'" A G 12 ? ? "C1'" A G 12 ? ? N9 A G 12 ? ? 112.83 108.50 4.33 0.70 N 106 9 N3 A G 18 ? ? C2 A G 18 ? ? N2 A G 18 ? ? 115.01 119.90 -4.89 0.70 N 107 9 "O4'" A C 23 ? ? "C1'" A C 23 ? ? N1 A C 23 ? ? 114.47 108.50 5.97 0.70 N 108 9 "O4'" A C 25 ? ? "C1'" A C 25 ? ? N1 A C 25 ? ? 113.83 108.50 5.33 0.70 N 109 9 N1 A C 25 ? ? C2 A C 25 ? ? O2 A C 25 ? ? 122.62 118.90 3.72 0.60 N 110 9 "O5'" A A 26 ? ? "C5'" A A 26 ? ? "C4'" A A 26 ? ? 103.70 109.40 -5.70 0.80 N 111 9 "O4'" A A 26 ? ? "C1'" A A 26 ? ? N9 A A 26 ? ? 113.97 108.50 5.47 0.70 N 112 9 "O4'" A C 30 ? ? "C1'" A C 30 ? ? N1 A C 30 ? ? 113.04 108.50 4.54 0.70 N 113 9 "O4'" A U 31 ? ? "C1'" A U 31 ? ? N1 A U 31 ? ? 112.83 108.50 4.33 0.70 N 114 9 "O4'" A C 34 ? ? "C1'" A C 34 ? ? N1 A C 34 ? ? 113.27 108.50 4.77 0.70 N 115 10 "O4'" A G 2 ? ? "C1'" A G 2 ? ? N9 A G 2 ? ? 113.76 108.50 5.26 0.70 N 116 10 "O4'" A C 3 ? ? "C1'" A C 3 ? ? N1 A C 3 ? ? 113.27 108.50 4.77 0.70 N 117 10 "O4'" A C 7 ? ? "C1'" A C 7 ? ? N1 A C 7 ? ? 113.11 108.50 4.61 0.70 N 118 10 "O4'" A A 13 ? ? "C1'" A A 13 ? ? N9 A A 13 ? ? 114.12 108.50 5.62 0.70 N 119 10 "O4'" A G 18 ? ? "C1'" A G 18 ? ? N9 A G 18 ? ? 115.38 108.50 6.88 0.70 N 120 10 N3 A G 18 ? ? C2 A G 18 ? ? N2 A G 18 ? ? 115.65 119.90 -4.25 0.70 N 121 10 "O4'" A A 20 ? ? "C1'" A A 20 ? ? N9 A A 20 ? ? 112.85 108.50 4.35 0.70 N 122 10 C5 A A 20 ? ? C6 A A 20 ? ? N1 A A 20 ? ? 120.76 117.70 3.06 0.50 N 123 10 "O4'" A U 21 ? ? "C1'" A U 21 ? ? N1 A U 21 ? ? 113.06 108.50 4.56 0.70 N 124 10 "O4'" A A 22 ? ? "C1'" A A 22 ? ? N9 A A 22 ? ? 113.62 108.50 5.12 0.70 N 125 10 "O4'" A C 23 ? ? "C1'" A C 23 ? ? N1 A C 23 ? ? 113.54 108.50 5.04 0.70 N 126 10 "O4'" A G 24 ? ? "C1'" A G 24 ? ? N9 A G 24 ? ? 113.22 108.50 4.72 0.70 N 127 10 "O4'" A G 28 ? ? "C1'" A G 28 ? ? N9 A G 28 ? ? 114.57 108.50 6.07 0.70 N 128 10 "O4'" A C 30 ? ? "C1'" A C 30 ? ? N1 A C 30 ? ? 113.34 108.50 4.84 0.70 N 129 10 "O4'" A U 31 ? ? "C1'" A U 31 ? ? N1 A U 31 ? ? 114.24 108.50 5.74 0.70 N 130 10 "O4'" A C 34 ? ? "C1'" A C 34 ? ? N1 A C 34 ? ? 114.13 108.50 5.63 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 2 ? ? 0.085 'SIDE CHAIN' 2 1 C A 3 ? ? 0.071 'SIDE CHAIN' 3 1 G A 9 ? ? 0.122 'SIDE CHAIN' 4 1 G A 12 ? ? 0.074 'SIDE CHAIN' 5 1 A A 16 ? ? 0.095 'SIDE CHAIN' 6 1 A A 20 ? ? 0.073 'SIDE CHAIN' 7 1 A A 27 ? ? 0.060 'SIDE CHAIN' 8 2 G A 1 ? ? 0.068 'SIDE CHAIN' 9 2 G A 2 ? ? 0.105 'SIDE CHAIN' 10 2 C A 3 ? ? 0.094 'SIDE CHAIN' 11 2 G A 9 ? ? 0.080 'SIDE CHAIN' 12 2 G A 14 ? ? 0.066 'SIDE CHAIN' 13 2 A A 16 ? ? 0.109 'SIDE CHAIN' 14 2 C A 17 ? ? 0.112 'SIDE CHAIN' 15 2 A A 20 ? ? 0.105 'SIDE CHAIN' 16 2 C A 23 ? ? 0.076 'SIDE CHAIN' 17 2 C A 34 ? ? 0.069 'SIDE CHAIN' 18 3 G A 1 ? ? 0.076 'SIDE CHAIN' 19 3 G A 2 ? ? 0.078 'SIDE CHAIN' 20 3 C A 3 ? ? 0.078 'SIDE CHAIN' 21 3 A A 13 ? ? 0.088 'SIDE CHAIN' 22 3 A A 16 ? ? 0.085 'SIDE CHAIN' 23 3 C A 17 ? ? 0.093 'SIDE CHAIN' 24 3 U A 19 ? ? 0.111 'SIDE CHAIN' 25 3 A A 20 ? ? 0.101 'SIDE CHAIN' 26 3 C A 23 ? ? 0.068 'SIDE CHAIN' 27 3 C A 25 ? ? 0.066 'SIDE CHAIN' 28 3 G A 28 ? ? 0.068 'SIDE CHAIN' 29 4 G A 2 ? ? 0.082 'SIDE CHAIN' 30 4 C A 3 ? ? 0.056 'SIDE CHAIN' 31 4 G A 9 ? ? 0.091 'SIDE CHAIN' 32 4 G A 12 ? ? 0.067 'SIDE CHAIN' 33 4 G A 14 ? ? 0.080 'SIDE CHAIN' 34 4 A A 20 ? ? 0.077 'SIDE CHAIN' 35 4 G A 24 ? ? 0.058 'SIDE CHAIN' 36 4 A A 27 ? ? 0.055 'SIDE CHAIN' 37 4 C A 30 ? ? 0.122 'SIDE CHAIN' 38 4 G A 32 ? ? 0.063 'SIDE CHAIN' 39 5 G A 1 ? ? 0.102 'SIDE CHAIN' 40 5 G A 2 ? ? 0.074 'SIDE CHAIN' 41 5 C A 3 ? ? 0.065 'SIDE CHAIN' 42 5 G A 9 ? ? 0.103 'SIDE CHAIN' 43 5 A A 10 ? ? 0.072 'SIDE CHAIN' 44 5 G A 12 ? ? 0.061 'SIDE CHAIN' 45 5 A A 16 ? ? 0.077 'SIDE CHAIN' 46 5 C A 17 ? ? 0.065 'SIDE CHAIN' 47 5 A A 20 ? ? 0.083 'SIDE CHAIN' 48 5 A A 27 ? ? 0.113 'SIDE CHAIN' 49 5 C A 30 ? ? 0.069 'SIDE CHAIN' 50 6 G A 2 ? ? 0.177 'SIDE CHAIN' 51 6 G A 12 ? ? 0.057 'SIDE CHAIN' 52 6 A A 13 ? ? 0.122 'SIDE CHAIN' 53 6 A A 16 ? ? 0.061 'SIDE CHAIN' 54 6 G A 18 ? ? 0.069 'SIDE CHAIN' 55 6 A A 20 ? ? 0.126 'SIDE CHAIN' 56 6 U A 21 ? ? 0.067 'SIDE CHAIN' 57 6 C A 23 ? ? 0.064 'SIDE CHAIN' 58 6 A A 27 ? ? 0.075 'SIDE CHAIN' 59 6 G A 28 ? ? 0.072 'SIDE CHAIN' 60 6 G A 29 ? ? 0.057 'SIDE CHAIN' 61 6 C A 30 ? ? 0.087 'SIDE CHAIN' 62 6 U A 33 ? ? 0.073 'SIDE CHAIN' 63 7 G A 2 ? ? 0.144 'SIDE CHAIN' 64 7 G A 5 ? ? 0.061 'SIDE CHAIN' 65 7 G A 9 ? ? 0.090 'SIDE CHAIN' 66 7 G A 14 ? ? 0.062 'SIDE CHAIN' 67 7 A A 16 ? ? 0.074 'SIDE CHAIN' 68 7 C A 17 ? ? 0.081 'SIDE CHAIN' 69 7 A A 20 ? ? 0.080 'SIDE CHAIN' 70 7 C A 25 ? ? 0.067 'SIDE CHAIN' 71 7 A A 27 ? ? 0.058 'SIDE CHAIN' 72 7 C A 34 ? ? 0.092 'SIDE CHAIN' 73 8 G A 1 ? ? 0.067 'SIDE CHAIN' 74 8 C A 3 ? ? 0.089 'SIDE CHAIN' 75 8 G A 5 ? ? 0.097 'SIDE CHAIN' 76 8 A A 8 ? ? 0.057 'SIDE CHAIN' 77 8 A A 16 ? ? 0.088 'SIDE CHAIN' 78 8 C A 17 ? ? 0.073 'SIDE CHAIN' 79 8 A A 20 ? ? 0.082 'SIDE CHAIN' 80 8 G A 32 ? ? 0.072 'SIDE CHAIN' 81 9 G A 2 ? ? 0.064 'SIDE CHAIN' 82 9 A A 4 ? ? 0.052 'SIDE CHAIN' 83 9 A A 16 ? ? 0.088 'SIDE CHAIN' 84 9 C A 17 ? ? 0.151 'SIDE CHAIN' 85 9 U A 19 ? ? 0.068 'SIDE CHAIN' 86 9 A A 20 ? ? 0.082 'SIDE CHAIN' 87 9 G A 28 ? ? 0.076 'SIDE CHAIN' 88 9 G A 29 ? ? 0.062 'SIDE CHAIN' 89 9 C A 34 ? ? 0.108 'SIDE CHAIN' 90 10 G A 2 ? ? 0.098 'SIDE CHAIN' 91 10 C A 3 ? ? 0.078 'SIDE CHAIN' 92 10 G A 5 ? ? 0.067 'SIDE CHAIN' 93 10 A A 8 ? ? 0.062 'SIDE CHAIN' 94 10 A A 16 ? ? 0.080 'SIDE CHAIN' 95 10 C A 17 ? ? 0.086 'SIDE CHAIN' 96 10 C A 34 ? ? 0.117 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5LWJ 'double helix' 5LWJ 'a-form double helix' 5LWJ 'mismatched base pair' 5LWJ 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 34 1_555 -0.594 -0.195 0.283 0.556 19.589 6.028 1 A_G1:C34_A A 1 ? A 34 ? 19 1 1 A G 2 1_555 A U 33 1_555 -2.446 -0.569 0.514 5.005 2.344 -0.970 2 A_G2:U33_A A 2 ? A 33 ? 28 1 1 A C 3 1_555 A G 32 1_555 -0.204 0.040 0.148 7.341 -12.932 1.705 3 A_C3:G32_A A 3 ? A 32 ? 19 1 1 A A 4 1_555 A U 31 1_555 -0.068 -0.035 -0.064 4.202 -9.775 -5.390 4 A_A4:U31_A A 4 ? A 31 ? 20 1 1 A G 5 1_555 A C 30 1_555 0.007 0.010 0.160 12.306 -3.788 1.037 5 A_G5:C30_A A 5 ? A 30 ? 19 1 1 A C 6 1_555 A G 29 1_555 0.002 -0.096 -0.688 8.941 -15.946 4.377 6 A_C6:G29_A A 6 ? A 29 ? 19 1 1 A C 7 1_555 A G 28 1_555 0.209 -0.037 0.129 5.032 -11.695 2.088 7 A_C7:G28_A A 7 ? A 28 ? 19 1 1 A A 8 1_555 A A 27 1_555 -1.515 -1.580 -0.280 19.531 -8.761 178.119 8 A_A8:A27_A A 8 ? A 27 ? 1 2 1 A G 14 1_555 A C 25 1_555 -0.439 -0.215 -0.208 4.337 1.556 -1.430 9 A_G14:C25_A A 14 ? A 25 ? 19 1 1 A C 15 1_555 A G 24 1_555 0.023 -0.093 0.167 -4.046 4.345 -4.927 10 A_C15:G24_A A 15 ? A 24 ? 19 1 1 A G 12 1_555 A C 23 1_555 -0.449 -0.274 0.524 -1.774 -15.626 -4.624 11 A_G12:C23_A A 12 ? A 23 ? 19 1 1 A G 18 1_555 A A 20 1_555 4.101 3.012 -0.821 29.010 26.412 91.085 12 A_G18:A20_A A 18 ? A 20 ? ? 5 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 34 1_555 A G 2 1_555 A U 33 1_555 -0.768 -1.697 3.517 -2.173 10.092 23.285 -6.699 1.131 2.623 23.574 5.075 25.442 1 AA_G1G2:U33C34_AA A 1 ? A 34 ? A 2 ? A 33 ? 1 A G 2 1_555 A U 33 1_555 A C 3 1_555 A G 32 1_555 0.039 -0.870 3.299 1.758 7.789 44.002 -1.848 0.108 3.108 10.295 -2.324 44.685 2 AA_G2C3:G32U33_AA A 2 ? A 33 ? A 3 ? A 32 ? 1 A C 3 1_555 A G 32 1_555 A A 4 1_555 A U 31 1_555 -0.863 -0.840 3.342 -1.842 11.134 34.724 -2.874 1.126 2.982 18.074 2.989 36.459 3 AA_C3A4:U31G32_AA A 3 ? A 32 ? A 4 ? A 31 ? 1 A A 4 1_555 A U 31 1_555 A G 5 1_555 A C 30 1_555 -0.052 -1.303 3.314 -4.215 11.772 28.076 -4.639 -0.680 2.556 22.884 8.194 30.684 4 AA_A4G5:C30U31_AA A 4 ? A 31 ? A 5 ? A 30 ? 1 A G 5 1_555 A C 30 1_555 A C 6 1_555 A G 29 1_555 0.136 -1.172 3.493 6.081 15.811 29.012 -4.610 0.755 2.518 28.684 -11.032 33.504 5 AA_G5C6:G29C30_AA A 5 ? A 30 ? A 6 ? A 29 ? 1 A C 6 1_555 A G 29 1_555 A C 7 1_555 A G 28 1_555 0.314 -0.737 3.853 -0.236 11.580 37.544 -2.686 -0.499 3.482 17.490 0.356 39.228 6 AA_C6C7:G28G29_AA A 6 ? A 29 ? A 7 ? A 28 ? 1 A C 7 1_555 A G 28 1_555 A A 8 1_555 A A 27 1_555 -1.176 -3.189 -1.188 -152.113 86.082 157.505 -1.535 0.693 -1.272 43.065 76.100 178.982 7 AA_C7A8:A27G28_AA A 7 ? A 28 ? A 8 ? A 27 ? 1 A G 14 1_555 A C 25 1_555 A C 15 1_555 A G 24 1_555 -0.193 -2.041 3.900 -2.746 -1.020 37.779 -2.986 -0.125 3.956 -1.573 4.234 37.888 8 AA_G14C15:G24C25_AA A 14 ? A 25 ? A 15 ? A 24 ? 1 A C 15 1_555 A G 24 1_555 A G 12 1_555 A C 23 1_555 6.068 -3.205 2.639 -6.324 11.336 -29.341 3.406 9.658 4.704 -21.125 -11.785 -32.026 9 AA_C15G12:C23G24_AA A 15 ? A 24 ? A 12 ? A 23 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'German Research Foundation' Germany 'WO901/1-1 to J.W' 1 'German Research Foundation' Germany 'Collaborative Research Center (SFB) 902 Molecular principles of RNA based regulation' 2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name "GUANOSINE-5'-TRIPHOSPHATE" _pdbx_entity_nonpoly.comp_id GTP #