HEADER TRANSCRIPTION 18-SEP-16 5LWK TITLE MAER RESPONSE REGULATOR BOUND TO BERYLLIUM TRIFLUORIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATORY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS PARACASEI; SOURCE 3 ORGANISM_TAXID: 1597; SOURCE 4 GENE: LPL9_2999; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS RESPONSE REGULATOR BERYLLIUM TRIFLUORIDE CATALYTIC ASPARTIC ACID, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR L.MIGUEL-ROMERO,P.CASINO,J.M.LANDETE,V.MONEDERO,M.ZUNIGA,A.MARINA REVDAT 2 17-JAN-24 5LWK 1 LINK REVDAT 1 28-JUN-17 5LWK 0 JRNL AUTH L.MIGUEL-ROMERO,P.CASINO,J.M.LANDETE,V.MONEDERO,M.ZUNIGA, JRNL AUTH 2 A.MARINA JRNL TITL THE MALATE SENSING TWO-COMPONENT SYSTEM MAEKR IS A JRNL TITL 2 NON-CANONICAL CLASS OF SENSORY COMPLEX FOR JRNL TITL 3 C4-DICARBOXYLATES. JRNL REF SCI REP V. 7 2708 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28577341 JRNL DOI 10.1038/S41598-017-02900-Z REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22642 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1236 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1657 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1973 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 86 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.99000 REMARK 3 B22 (A**2) : 1.99000 REMARK 3 B33 (A**2) : -3.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.166 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.250 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2016 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2021 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2724 ; 1.272 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4629 ; 0.999 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 246 ; 6.230 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 94 ;37.303 ;24.043 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 383 ;17.024 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;21.559 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 334 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2210 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 450 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 978 ; 2.138 ; 5.187 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 977 ; 2.139 ; 5.183 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1220 ; 3.433 ; 7.758 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5LWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001484. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97624 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23899 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 67.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04400 REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.67400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ZH4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M MAGNESIUM SULFATE 0.1M MES PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y,Z REMARK 290 7555 -Y+1/2,X,Z+3/4 REMARK 290 8555 Y,-X+1/2,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.89750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 37.89750 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.77750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.89750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.88875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.89750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.66625 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.89750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.89750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 73.77750 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 37.89750 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 110.66625 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 37.89750 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 36.88875 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 THR A 67 CG2 REMARK 470 LYS B 58 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 28 -76.76 -72.90 REMARK 500 ASP B 28 -75.11 -95.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 9 OD1 REMARK 620 2 ASP A 54 OD2 85.2 REMARK 620 3 ARG A 56 O 81.5 89.4 REMARK 620 4 HOH A 307 O 95.9 86.7 175.5 REMARK 620 5 HOH A 318 O 95.4 178.4 89.3 94.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A 201 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 54 OD1 REMARK 620 2 BEF A 201 F1 117.3 REMARK 620 3 BEF A 201 F2 106.1 106.0 REMARK 620 4 BEF A 201 F3 94.7 118.9 113.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 9 OD1 REMARK 620 2 ASP B 54 OD2 83.6 REMARK 620 3 ARG B 56 O 88.7 86.7 REMARK 620 4 HOH B 308 O 87.7 86.3 172.4 REMARK 620 5 HOH B 317 O 96.8 174.5 98.8 88.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF B 201 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 54 OD1 REMARK 620 2 BEF B 201 F1 111.7 REMARK 620 3 BEF B 201 F2 102.2 110.9 REMARK 620 4 BEF B 201 F3 103.3 118.0 109.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEF B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 DBREF1 5LWK A 1 122 UNP A0A0K1MY03_LACPA DBREF2 5LWK A A0A0K1MY03 1 122 DBREF1 5LWK B 1 122 UNP A0A0K1MY03_LACPA DBREF2 5LWK B A0A0K1MY03 1 122 SEQRES 1 A 122 MET THR ASN ILE LEU ILE VAL GLU ASP ASP PRO MET VAL SEQRES 2 A 122 GLN PHE ILE HIS ARG ASN TYR LEU GLU LYS ILE GLY THR SEQRES 3 A 122 PHE ASP THR ILE TYR SER SER GLU THR ILE ALA ASP ALA SEQRES 4 A 122 LYS LYS LEU LEU ALA SER ARG SER ILE GLN LEU VAL LEU SEQRES 5 A 122 LEU ASP ILE ARG LEU LYS ASP GLY ASN GLY ILE ASP PHE SEQRES 6 A 122 LEU THR ASP LEU ARG ARG THR LYS GLN THR VAL ASP VAL SEQRES 7 A 122 ILE LEU ILE THR ALA ALA ASN GLU VAL ASN ILE VAL ASN SEQRES 8 A 122 ASP ALA LEU HIS LEU GLY VAL ILE ASP TYR LEU ILE LYS SEQRES 9 A 122 PRO PHE THR LEU GLU ARG PHE GLU LYS SER ILE GLN ARG SEQRES 10 A 122 TYR ARG THR LYS HIS SEQRES 1 B 122 MET THR ASN ILE LEU ILE VAL GLU ASP ASP PRO MET VAL SEQRES 2 B 122 GLN PHE ILE HIS ARG ASN TYR LEU GLU LYS ILE GLY THR SEQRES 3 B 122 PHE ASP THR ILE TYR SER SER GLU THR ILE ALA ASP ALA SEQRES 4 B 122 LYS LYS LEU LEU ALA SER ARG SER ILE GLN LEU VAL LEU SEQRES 5 B 122 LEU ASP ILE ARG LEU LYS ASP GLY ASN GLY ILE ASP PHE SEQRES 6 B 122 LEU THR ASP LEU ARG ARG THR LYS GLN THR VAL ASP VAL SEQRES 7 B 122 ILE LEU ILE THR ALA ALA ASN GLU VAL ASN ILE VAL ASN SEQRES 8 B 122 ASP ALA LEU HIS LEU GLY VAL ILE ASP TYR LEU ILE LYS SEQRES 9 B 122 PRO PHE THR LEU GLU ARG PHE GLU LYS SER ILE GLN ARG SEQRES 10 B 122 TYR ARG THR LYS HIS HET BEF A 201 4 HET MG A 202 1 HET BEF B 201 4 HET MG B 202 1 HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM MG MAGNESIUM ION FORMUL 3 BEF 2(BE F3 1-) FORMUL 4 MG 2(MG 2+) FORMUL 7 HOH *86(H2 O) HELIX 1 AA1 ASP A 10 GLY A 25 1 16 HELIX 2 AA2 THR A 35 ARG A 46 1 12 HELIX 3 AA3 ASN A 61 THR A 72 1 12 HELIX 4 AA4 ASN A 85 ALA A 93 1 9 HELIX 5 AA5 THR A 107 HIS A 122 1 16 HELIX 6 AA6 ASP B 10 GLY B 25 1 16 HELIX 7 AA7 THR B 35 ARG B 46 1 12 HELIX 8 AA8 GLY B 62 THR B 72 1 11 HELIX 9 AA9 ASN B 85 ASP B 92 1 8 HELIX 10 AB1 THR B 107 LYS B 121 1 15 SHEET 1 AA1 5 ILE A 30 SER A 33 0 SHEET 2 AA1 5 ILE A 4 VAL A 7 1 N ILE A 4 O TYR A 31 SHEET 3 AA1 5 LEU A 50 LEU A 53 1 O LEU A 52 N VAL A 7 SHEET 4 AA1 5 ASP A 77 THR A 82 1 O ILE A 79 N LEU A 53 SHEET 5 AA1 5 ASP B 100 ILE B 103 1 O LEU B 102 N LEU A 80 SHEET 1 AA2 5 ASP A 100 ILE A 103 0 SHEET 2 AA2 5 ASP B 77 THR B 82 1 O LEU B 80 N LEU A 102 SHEET 3 AA2 5 LEU B 50 LEU B 53 1 N LEU B 53 O ILE B 79 SHEET 4 AA2 5 THR B 2 VAL B 7 1 N VAL B 7 O LEU B 52 SHEET 5 AA2 5 PHE B 27 SER B 33 1 O TYR B 31 N ILE B 4 SHEET 1 AA3 2 ARG B 56 LEU B 57 0 SHEET 2 AA3 2 GLY B 60 ASN B 61 -1 O GLY B 60 N LEU B 57 LINK OD1 ASP A 9 MG MG A 202 1555 1555 2.03 LINK OD1 ASP A 54 BE BEF A 201 1555 1555 1.77 LINK OD2 ASP A 54 MG MG A 202 1555 1555 2.11 LINK O ARG A 56 MG MG A 202 1555 1555 2.04 LINK MG MG A 202 O HOH A 307 1555 1555 1.98 LINK MG MG A 202 O HOH A 318 1555 1555 2.00 LINK OD1 ASP B 9 MG MG B 202 1555 1555 2.14 LINK OD1 ASP B 54 BE BEF B 201 1555 1555 1.82 LINK OD2 ASP B 54 MG MG B 202 1555 1555 2.13 LINK O ARG B 56 MG MG B 202 1555 1555 2.06 LINK MG MG B 202 O HOH B 308 1555 1555 2.01 LINK MG MG B 202 O HOH B 317 1555 1555 2.04 CISPEP 1 LYS A 104 PRO A 105 0 0.16 CISPEP 2 LYS B 104 PRO B 105 0 1.30 SITE 1 AC1 10 ASP A 54 ILE A 55 ARG A 56 THR A 82 SITE 2 AC1 10 ALA A 83 MG A 202 HOH A 307 HOH A 318 SITE 3 AC1 10 LYS B 104 HOH B 327 SITE 1 AC2 6 ASP A 9 ASP A 54 ARG A 56 BEF A 201 SITE 2 AC2 6 HOH A 307 HOH A 318 SITE 1 AC3 10 LYS A 104 ASP B 54 ILE B 55 ARG B 56 SITE 2 AC3 10 THR B 82 ALA B 83 MG B 202 HOH B 308 SITE 3 AC3 10 HOH B 317 HOH B 335 SITE 1 AC4 6 ASP B 9 ASP B 54 ARG B 56 BEF B 201 SITE 2 AC4 6 HOH B 308 HOH B 317 CRYST1 75.795 75.795 147.555 90.00 90.00 90.00 I 41 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013193 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013193 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006777 0.00000 TER 993 HIS A 122 TER 1981 HIS B 122 HETATM 1982 BE BEF A 201 -19.794 15.511 5.266 0.80 35.56 BE HETATM 1983 F1 BEF A 201 -20.243 16.253 4.059 0.80 35.59 F HETATM 1984 F2 BEF A 201 -18.305 15.709 5.343 0.80 34.98 F HETATM 1985 F3 BEF A 201 -20.496 15.759 6.574 0.80 34.18 F HETATM 1986 MG MG A 202 -21.006 15.533 2.431 1.00 43.58 MG HETATM 1987 BE BEF B 201 -19.783 20.264 30.684 0.80 32.65 BE HETATM 1988 F1 BEF B 201 -19.856 19.487 31.963 0.80 31.44 F HETATM 1989 F2 BEF B 201 -18.384 20.755 30.435 0.80 31.66 F HETATM 1990 F3 BEF B 201 -20.310 19.625 29.445 0.80 32.90 F HETATM 1991 MG MG B 202 -20.687 19.904 33.698 1.00 40.44 MG HETATM 1992 O HOH A 301 -30.546 24.921 10.923 1.00 55.66 O HETATM 1993 O HOH A 302 -34.419 0.988 4.821 1.00 52.32 O HETATM 1994 O HOH A 303 -5.454 9.475 4.520 1.00 52.28 O HETATM 1995 O HOH A 304 -10.633 19.904 26.190 1.00 58.90 O HETATM 1996 O HOH A 305 -33.893 7.501 17.424 1.00 55.16 O HETATM 1997 O HOH A 306 -24.960 -7.004 -4.600 1.00 85.37 O HETATM 1998 O HOH A 307 -19.105 15.208 1.993 1.00 42.66 O HETATM 1999 O HOH A 308 -32.156 15.447 6.763 1.00 64.34 O HETATM 2000 O HOH A 309 -30.897 18.497 10.087 1.00 55.81 O HETATM 2001 O HOH A 310 -30.805 12.877 17.246 1.00 49.00 O HETATM 2002 O HOH A 311 -17.532 23.279 17.169 1.00 45.95 O HETATM 2003 O HOH A 312 -22.773 1.586 15.782 1.00 49.05 O HETATM 2004 O HOH A 313 -17.731 10.037 4.721 1.00 39.73 O HETATM 2005 O HOH A 314 -16.898 25.926 18.029 1.00 50.20 O HETATM 2006 O HOH A 315 -28.972 31.509 20.477 1.00 40.90 O HETATM 2007 O HOH A 316 -33.234 27.176 16.956 1.00 47.75 O HETATM 2008 O HOH A 317 -13.857 21.705 17.341 1.00 66.38 O HETATM 2009 O HOH A 318 -21.065 17.335 1.574 1.00 39.36 O HETATM 2010 O HOH A 319 -23.773 27.775 12.936 1.00 52.78 O HETATM 2011 O HOH A 320 -33.737 10.796 7.369 1.00 59.48 O HETATM 2012 O HOH A 321 -35.904 6.102 -0.030 1.00 58.34 O HETATM 2013 O HOH A 322 -29.537 26.410 14.042 1.00 39.52 O HETATM 2014 O HOH A 323 -12.975 19.600 19.223 1.00 60.58 O HETATM 2015 O HOH A 324 -16.659 7.148 -6.581 1.00 51.27 O HETATM 2016 O HOH A 325 -33.301 19.250 17.431 1.00 51.47 O HETATM 2017 O HOH A 326 -33.899 -7.491 -1.983 1.00 59.36 O HETATM 2018 O HOH A 327 -18.904 7.478 4.487 1.00 55.17 O HETATM 2019 O HOH A 328 -18.437 17.080 -1.605 1.00 49.23 O HETATM 2020 O HOH A 329 -26.891 30.624 15.269 1.00 62.29 O HETATM 2021 O HOH A 330 -5.867 6.003 -2.122 1.00 72.87 O HETATM 2022 O HOH A 331 -24.613 19.142 10.696 1.00 45.33 O HETATM 2023 O HOH A 332 -31.370 31.307 17.567 1.00 59.43 O HETATM 2024 O HOH A 333 -22.571 0.170 -4.919 1.00 64.77 O HETATM 2025 O HOH A 334 -6.770 35.368 26.460 1.00 56.13 O HETATM 2026 O HOH A 335 -14.096 30.376 16.255 1.00 70.70 O HETATM 2027 O HOH A 336 -7.512 27.268 24.749 1.00 47.52 O HETATM 2028 O HOH A 337 -6.803 33.597 29.148 1.00 58.51 O HETATM 2029 O HOH A 338 -13.537 26.896 21.217 1.00 56.15 O HETATM 2030 O HOH A 339 -9.722 28.866 23.749 1.00 50.27 O HETATM 2031 O HOH A 340 -34.151 13.384 3.975 1.00 74.23 O HETATM 2032 O HOH A 341 -25.734 -6.197 -7.272 1.00 77.09 O HETATM 2033 O HOH A 342 -30.921 19.710 7.737 1.00 59.95 O HETATM 2034 O HOH A 343 -27.765 28.755 13.106 1.00 69.00 O HETATM 2035 O HOH A 344 -33.140 17.193 14.936 1.00 66.07 O HETATM 2036 O HOH B 301 -36.788 34.096 31.322 1.00 47.19 O HETATM 2037 O HOH B 302 -36.004 29.402 21.802 1.00 60.46 O HETATM 2038 O HOH B 303 -25.892 19.708 38.155 1.00 61.29 O HETATM 2039 O HOH B 304 -35.108 42.979 30.686 0.50 56.28 O HETATM 2040 O HOH B 305 -35.110 43.034 30.669 0.50 53.41 O HETATM 2041 O HOH B 306 -11.293 19.474 9.463 1.00 60.90 O HETATM 2042 O HOH B 307 -8.586 15.682 11.302 1.00 54.46 O HETATM 2043 O HOH B 308 -19.068 21.045 34.032 1.00 37.42 O HETATM 2044 O HOH B 309 -9.612 11.836 11.681 1.00 62.53 O HETATM 2045 O HOH B 310 -12.980 17.131 18.281 1.00 55.23 O HETATM 2046 O HOH B 311 -38.863 27.694 32.226 1.00 57.72 O HETATM 2047 O HOH B 312 -31.118 15.221 29.930 1.00 54.62 O HETATM 2048 O HOH B 313 -19.949 26.317 31.082 1.00 40.29 O HETATM 2049 O HOH B 314 -15.490 13.742 18.677 1.00 44.71 O HETATM 2050 O HOH B 315 -24.965 6.160 22.443 1.00 42.49 O HETATM 2051 O HOH B 316 -39.698 30.018 30.865 1.00 56.64 O HETATM 2052 O HOH B 317 -19.721 18.370 34.629 1.00 39.97 O HETATM 2053 O HOH B 318 -31.824 17.910 19.663 1.00 52.29 O HETATM 2054 O HOH B 319 -13.078 19.271 16.310 1.00 64.17 O HETATM 2055 O HOH B 320 -31.662 37.471 23.385 1.00 64.98 O HETATM 2056 O HOH B 321 -22.607 22.386 44.900 1.00 66.31 O HETATM 2057 O HOH B 322 -22.495 13.318 34.863 1.00 73.26 O HETATM 2058 O HOH B 323 -13.332 11.273 22.262 1.00 49.03 O HETATM 2059 O HOH B 324 -36.721 21.767 19.643 1.00 57.83 O HETATM 2060 O HOH B 325 -28.444 3.863 19.703 1.00 68.59 O HETATM 2061 O HOH B 326 -28.045 33.524 40.904 1.00 53.90 O HETATM 2062 O HOH B 327 -17.677 20.652 40.671 1.00 46.01 O HETATM 2063 O HOH B 328 -20.489 6.374 25.049 1.00 62.57 O HETATM 2064 O HOH B 329 -35.530 17.289 24.434 1.00 58.16 O HETATM 2065 O HOH B 330 -6.392 11.241 11.394 1.00 56.14 O HETATM 2066 O HOH B 331 -10.028 11.306 17.205 1.00 66.51 O HETATM 2067 O HOH B 332 -10.621 35.018 36.691 1.00 72.58 O HETATM 2068 O HOH B 333 -34.732 33.117 20.673 1.00 77.90 O HETATM 2069 O HOH B 334 -26.765 36.844 41.557 1.00 75.84 O HETATM 2070 O HOH B 335 -19.157 17.453 28.600 1.00 53.37 O HETATM 2071 O HOH B 336 -37.525 32.709 20.264 1.00 69.64 O HETATM 2072 O HOH B 337 -29.493 3.658 22.875 1.00 69.22 O HETATM 2073 O HOH B 338 -11.712 16.171 20.852 1.00 67.35 O HETATM 2074 O HOH B 339 -21.170 14.981 27.564 1.00 55.06 O HETATM 2075 O HOH B 340 -8.460 33.397 35.396 1.00 63.80 O HETATM 2076 O HOH B 341 -9.291 9.082 19.441 1.00 52.57 O HETATM 2077 O HOH B 342 -26.706 4.018 23.367 1.00 63.30 O CONECT 70 1986 CONECT 435 1982 CONECT 436 1986 CONECT 448 1986 CONECT 1063 1991 CONECT 1425 1987 CONECT 1426 1991 CONECT 1438 1991 CONECT 1982 435 1983 1984 1985 CONECT 1983 1982 CONECT 1984 1982 CONECT 1985 1982 CONECT 1986 70 436 448 1998 CONECT 1986 2009 CONECT 1987 1425 1988 1989 1990 CONECT 1988 1987 CONECT 1989 1987 CONECT 1990 1987 CONECT 1991 1063 1426 1438 2043 CONECT 1991 2052 CONECT 1998 1986 CONECT 2009 1986 CONECT 2043 1991 CONECT 2052 1991 MASTER 342 0 4 10 12 0 10 6 2069 2 24 20 END