HEADER TRANSPORT PROTEIN 20-SEP-16 5LX8 TITLE CRYSTAL STRUCTURE OF BT1762 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUSD HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON (STRAIN ATCC 29148 SOURCE 3 / DSM 2079 / NCTC 10582 / E50 / VPI-5482); SOURCE 4 ORGANISM_TAXID: 226186; SOURCE 5 GENE: BT_1762; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS OUTER MEMBRANE PROTEIN, PROTEIN COMPLEX, TONB DEPENDENT TRANSPORTER, KEYWDS 2 CARBOHYDRATE BINDING PROTEIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.BASLE REVDAT 4 30-AUG-17 5LX8 1 REMARK REVDAT 3 01-FEB-17 5LX8 1 JRNL REVDAT 2 25-JAN-17 5LX8 1 JRNL REVDAT 1 14-DEC-16 5LX8 0 JRNL AUTH A.J.GLENWRIGHT,K.R.POTHULA,S.P.BHAMIDIMARRI,D.S.CHOREV, JRNL AUTH 2 A.BASLE,S.J.FIRBANK,H.ZHENG,C.V.ROBINSON,M.WINTERHALTER, JRNL AUTH 3 U.KLEINEKATHOFER,D.N.BOLAM,B.VAN DEN BERG JRNL TITL STRUCTURAL BASIS FOR NUTRIENT ACQUISITION BY DOMINANT JRNL TITL 2 MEMBERS OF THE HUMAN GUT MICROBIOTA. JRNL REF NATURE V. 541 407 2017 JRNL REFN ESSN 1476-4687 JRNL PMID 28077872 JRNL DOI 10.1038/NATURE20828 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 56424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2889 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3984 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 225 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4288 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 331 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : -0.27000 REMARK 3 B33 (A**2) : -0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.098 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.315 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4457 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4028 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6062 ; 1.572 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9277 ; 1.005 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 546 ; 5.735 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 235 ;35.239 ;25.106 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 740 ;12.036 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;10.087 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 636 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5168 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1074 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2142 ; 1.242 ; 1.574 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2141 ; 1.242 ; 1.574 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2678 ; 1.835 ; 2.352 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2679 ; 1.835 ; 2.352 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2314 ; 1.962 ; 1.778 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2294 ; 1.913 ; 1.753 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3346 ; 3.005 ; 2.560 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5602 ; 4.346 ;13.166 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5453 ; 4.200 ;12.965 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LX8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001476. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59338 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 45.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.64000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 100 MM SODIUM REMARK 280 ACETATE PH 4.6 AND 8% PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.30500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.30500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.81650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.69000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.81650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.69000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.30500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 53.81650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 64.69000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.30500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 53.81650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 64.69000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 784 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 ILE A 4 REMARK 465 ILE A 5 REMARK 465 TYR A 6 REMARK 465 ILE A 7 REMARK 465 ALA A 8 REMARK 465 THR A 9 REMARK 465 ILE A 10 REMARK 465 GLY A 11 REMARK 465 ILE A 12 REMARK 465 THR A 13 REMARK 465 LEU A 14 REMARK 465 LEU A 15 REMARK 465 THR A 16 REMARK 465 THR A 17 REMARK 465 SER A 18 REMARK 465 CYS A 19 REMARK 465 ASP A 20 REMARK 465 ASP A 21 REMARK 465 PHE A 22 REMARK 465 LEU A 23 REMARK 465 ASP A 24 REMARK 465 ARG A 25 REMARK 465 GLN A 26 REMARK 465 VAL A 27 REMARK 465 PRO A 28 REMARK 465 GLN A 29 REMARK 465 GLY A 30 REMARK 465 ILE A 31 REMARK 465 ASN A 294 REMARK 465 ASP A 295 REMARK 465 GLY A 296 REMARK 465 THR A 297 REMARK 465 TYR A 298 REMARK 465 ASN A 299 REMARK 465 GLY A 300 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 446 O HOH A 701 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 703 O HOH A 703 4556 0.52 REMARK 500 O HOH A 979 O HOH A 979 4556 0.69 REMARK 500 O HOH A 927 O HOH A 927 3655 1.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 62 50.53 -151.03 REMARK 500 SER A 62 48.19 -149.91 REMARK 500 LYS A 160 -64.80 67.82 REMARK 500 VAL A 165 77.86 -110.75 REMARK 500 HIS A 320 67.94 68.02 REMARK 500 LYS A 546 -62.72 -163.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 606 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 71 O REMARK 620 2 SER A 73 O 102.8 REMARK 620 3 CYS A 76 O 100.8 100.6 REMARK 620 4 TYR A 537 OH 121.2 133.3 86.7 REMARK 620 5 HOH A 913 O 82.7 86.1 171.5 84.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 607 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 272 O REMARK 620 2 TYR A 372 OH 124.7 REMARK 620 3 HOH A 853 O 141.6 87.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 608 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 384 O REMARK 620 2 TYR A 393 O 107.3 REMARK 620 3 HOH A 755 O 73.1 173.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 608 DBREF 5LX8 A 1 570 UNP Q8A6W4 Q8A6W4_BACTN 1 570 SEQRES 1 A 570 MET LYS LYS ILE ILE TYR ILE ALA THR ILE GLY ILE THR SEQRES 2 A 570 LEU LEU THR THR SER CYS ASP ASP PHE LEU ASP ARG GLN SEQRES 3 A 570 VAL PRO GLN GLY ILE VAL THR GLY ASP GLN ILE ALA SER SEQRES 4 A 570 PRO GLU TYR VAL ASP ASN LEU VAL ILE SER ALA TYR ALA SEQRES 5 A 570 ILE TRP ALA THR GLY ASP ASP ILE ASN SER SER PHE SER SEQRES 6 A 570 LEU TRP ASN TYR ASP VAL ARG SER ASP ASP CYS TYR LYS SEQRES 7 A 570 GLY GLY SER GLY THR GLU ASP GLY GLY VAL PHE ASN ALA SEQRES 8 A 570 LEU GLU ILE SER LYS GLY ILE ASN THR THR ASP TRP ASN SEQRES 9 A 570 ILE ASN ASP ILE TRP LYS ARG LEU TYR GLN CYS ILE THR SEQRES 10 A 570 ARG ALA ASN THR ALA LEU GLN SER LEU ASP GLN MET ASP SEQRES 11 A 570 GLU LYS THR TYR PRO LEU LYS ASN GLN ARG ILE ALA GLU SEQRES 12 A 570 MET ARG PHE LEU ARG GLY HIS ALA HIS PHE MET LEU LYS SEQRES 13 A 570 GLN LEU PHE LYS LYS ILE VAL ILE VAL ASN ASP GLU ASN SEQRES 14 A 570 MET GLU PRO ASP ALA TYR ASN GLU LEU SER ASN THR THR SEQRES 15 A 570 TYR THR ASN ASP GLU GLN TRP GLN LYS ILE ALA ASP ASP SEQRES 16 A 570 PHE GLN PHE ALA TYR ASP ASN LEU PRO GLU VAL GLN ILE SEQRES 17 A 570 GLU LYS GLY ARG PRO ALA GLN ALA ALA ALA ALA ALA TYR SEQRES 18 A 570 LEU ALA LYS THR TYR LEU TYR LYS ALA TYR ARG GLN ASP SEQRES 19 A 570 GLY ALA ASP ASN ALA LEU THR GLY ILE ASN GLU GLU ASP SEQRES 20 A 570 LEU LYS GLN VAL VAL LYS TYR THR ASP PRO LEU ILE MET SEQRES 21 A 570 ALA LYS GLY GLY TYR GLY LEU GLU THR ASP TYR SER MET SEQRES 22 A 570 ASN PHE LEU PRO GLN TYR GLU ASN GLY ALA GLU SER VAL SEQRES 23 A 570 TRP ALA ILE GLN TYR SER ILE ASN ASP GLY THR TYR ASN SEQRES 24 A 570 GLY ASN LEU ASN TRP GLY MET GLY LEU THR THR PRO GLN SEQRES 25 A 570 ILE LEU GLY CYS CYS ASP PHE HIS LYS PRO SER GLN ASN SEQRES 26 A 570 LEU VAL ASN ALA PHE LYS THR ASP SER GLN GLY LYS PRO SEQRES 27 A 570 LEU PHE SER THR TYR ASP ASN GLU ASN TYR GLU VAL ALA SEQRES 28 A 570 THR ASP ASN VAL ASP PRO ARG LEU PHE HIS THR VAL GLY SEQRES 29 A 570 MET PRO GLY PHE PRO TYR LYS TYR ASN GLU GLY TYR ILE SEQRES 30 A 570 ILE GLN LYS ASN ASP ASP TRP SER ARG SER LYS GLY LEU SEQRES 31 A 570 TYR GLY TYR TYR VAL SER LEU LYS GLU ASN VAL ASP PRO SEQRES 32 A 570 ASP CYS ASP CYS LEU LYS LYS GLY SER TYR TRP ALA SER SEQRES 33 A 570 SER LEU ASN HIS ILE VAL ILE ARG TYR ALA ASP VAL LEU SEQRES 34 A 570 LEU MET ARG ALA GLU ALA LEU ILE GLN LEU ASN ASP GLY SEQRES 35 A 570 ARG ILE THR ASP ALA ILE SER LEU ILE ASN GLU VAL ARG SEQRES 36 A 570 SER ARG ALA ALA GLY SER THR MET LEU ILE PHE ASN TYR SEQRES 37 A 570 LYS GLU ASP TYR GLY VAL ASN PHE LYS VAL THR PRO TYR SEQRES 38 A 570 ASP LEU LYS ALA TYR ALA GLN ASP GLU ALA MET LYS MET SEQRES 39 A 570 LEU LYS TRP GLU ARG ARG VAL GLU PHE GLY MET GLU SER SEQRES 40 A 570 SER ARG PHE PHE ASP LEU VAL ARG TRP GLY GLU ALA LYS SEQRES 41 A 570 ASP VAL ILE ASN ALA TYR TYR VAL THR GLU ALA SER ARG SEQRES 42 A 570 CYS SER ILE TYR LYS ASN ALA GLY PHE THR GLU ASN LYS SEQRES 43 A 570 ASN GLU TYR LEU PRO VAL PRO PHE GLU GLN ILE SER ALA SEQRES 44 A 570 SER ASN GLY ASN TYR THR GLN ASN PHE GLY TRP HET SO4 A 601 5 HET SO4 A 602 5 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET NA A 606 1 HET NA A 607 1 HET NA A 608 1 HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 NA 3(NA 1+) FORMUL 10 HOH *331(H2 O) HELIX 1 AA1 VAL A 32 GLN A 36 5 5 HELIX 2 AA2 SER A 39 GLY A 57 1 19 HELIX 3 AA3 LEU A 66 VAL A 71 1 6 HELIX 4 AA4 GLY A 86 SER A 95 1 10 HELIX 5 AA5 ASP A 102 GLN A 128 1 27 HELIX 6 AA6 LEU A 136 LYS A 160 1 25 HELIX 7 AA7 GLU A 171 GLU A 177 1 7 HELIX 8 AA8 THR A 184 LEU A 203 1 20 HELIX 9 AA9 ALA A 214 ALA A 230 1 17 HELIX 10 AB1 ASN A 244 THR A 255 1 12 HELIX 11 AB2 ASP A 256 GLY A 263 1 8 HELIX 12 AB3 ASP A 270 GLU A 280 5 11 HELIX 13 AB4 ASN A 303 GLY A 307 5 5 HELIX 14 AB5 PRO A 311 GLY A 315 5 5 HELIX 15 AB6 SER A 323 PHE A 330 1 8 HELIX 16 AB7 ARG A 358 THR A 362 1 5 HELIX 17 AB8 TYR A 425 ASN A 440 1 16 HELIX 18 AB9 ARG A 443 GLY A 460 1 18 HELIX 19 AC1 ASN A 467 GLY A 473 1 7 HELIX 20 AC2 ALA A 487 PHE A 503 1 17 HELIX 21 AC3 SER A 508 TRP A 516 1 9 HELIX 22 AC4 GLU A 518 ALA A 531 1 14 HELIX 23 AC5 CYS A 534 LYS A 538 5 5 HELIX 24 AC6 PRO A 553 SER A 560 1 8 SHEET 1 AA1 2 CYS A 76 GLY A 79 0 SHEET 2 AA1 2 PHE A 319 PRO A 322 -1 O LYS A 321 N TYR A 77 SHEET 1 AA2 2 TYR A 231 ARG A 232 0 SHEET 2 AA2 2 GLY A 242 ILE A 243 -1 N GLY A 242 O ARG A 232 SHEET 1 AA3 2 SER A 285 ILE A 289 0 SHEET 2 AA3 2 HIS A 420 ARG A 424 -1 O HIS A 420 N ILE A 289 SHEET 1 AA4 3 LYS A 331 THR A 332 0 SHEET 2 AA4 3 ASN A 354 VAL A 355 -1 O ASN A 354 N THR A 332 SHEET 3 AA4 3 ASN A 475 PHE A 476 1 O ASN A 475 N VAL A 355 SHEET 1 AA5 2 VAL A 363 GLY A 364 0 SHEET 2 AA5 2 VAL A 395 SER A 396 -1 O VAL A 395 N GLY A 364 SHEET 1 AA6 2 PRO A 369 TYR A 370 0 SHEET 2 AA6 2 ASN A 373 ILE A 377 -1 O TYR A 376 N TYR A 370 SHEET 1 AA7 2 LEU A 408 LYS A 410 0 SHEET 2 AA7 2 TRP A 414 SER A 416 -1 O ALA A 415 N LYS A 409 SSBOND 1 CYS A 316 CYS A 317 1555 1555 2.08 SSBOND 2 CYS A 405 CYS A 407 1555 1555 2.12 LINK O VAL A 71 NA NA A 606 1555 1555 2.33 LINK O SER A 73 NA NA A 606 1555 1555 2.30 LINK O CYS A 76 NA NA A 606 1555 1555 2.29 LINK O SER A 272 NA NA A 607 1555 1555 2.99 LINK OH TYR A 372 NA NA A 607 1555 1555 2.70 LINK O TRP A 384 NA NA A 608 1555 1555 2.49 LINK O TYR A 393 NA NA A 608 1555 1555 2.93 LINK OH TYR A 537 NA NA A 606 1555 1555 2.62 LINK NA NA A 606 O HOH A 913 1555 1555 2.45 LINK NA NA A 607 O HOH A 853 1555 1555 2.53 LINK NA NA A 608 O HOH A 755 1555 1555 2.64 CISPEP 1 CYS A 316 CYS A 317 0 -6.03 SITE 1 AC1 5 LEU A 339 PHE A 340 SER A 341 THR A 342 SITE 2 AC1 5 HOH A 802 SITE 1 AC2 7 GLY A 442 ARG A 443 ILE A 444 THR A 445 SITE 2 AC2 7 HOH A 701 HOH A 727 HOH A 838 SITE 1 AC3 5 ASN A 440 ALA A 487 GLN A 488 HOH A 723 SITE 2 AC3 5 HOH A 743 SITE 1 AC4 2 ASP A 333 SER A 334 SITE 1 AC5 4 SER A 292 ILE A 293 SER A 417 HOH A 836 SITE 1 AC6 7 VAL A 71 SER A 73 CYS A 76 GLU A 93 SITE 2 AC6 7 TYR A 526 TYR A 537 HOH A 913 SITE 1 AC7 4 SER A 272 PHE A 275 TYR A 372 HOH A 853 SITE 1 AC8 6 LYS A 321 TRP A 384 TYR A 393 TYR A 394 SITE 2 AC8 6 VAL A 395 HOH A 755 CRYST1 107.633 129.380 86.610 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009291 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007729 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011546 0.00000