HEADER PROTEIN BINDING 22-SEP-16 5LXV TITLE CRYSTAL STRUCTURE OF RUMINOCOCCUS FLAVEFACIENS SCAFFOLDIN C COHESIN IN TITLE 2 COMPLEX WITH A DOCKERIN FROM AN UNCHARACTERIZED CBM-CONTAINING TITLE 3 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCAFFOLDIN C; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: SCAC TYPE I COHESIN DOMAIN, UNP RESIDUES 29-204; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: CARBOHYDRATE-BINDING PROTEIN WP_009985128; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: DOC3: TYPE I DOCKERIN DOMAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUMINOCOCCUS FLAVEFACIENS FD-1; SOURCE 3 ORGANISM_TAXID: 641112; SOURCE 4 GENE: SCAC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET28A; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: RUMINOCOCCUS FLAVEFACIENS FD-1; SOURCE 11 ORGANISM_TAXID: 641112; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_VECTOR: PET28A KEYWDS CELLULOSOME, COHESIN, DOCKERIN, TYPE I COHESIN-DOCKERIN, COH-DOC, KEYWDS 2 PROTEIN-PROTEIN INTERACTION, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.NAJMUDIN,P.BULE,C.M.G.A.FONTES REVDAT 5 17-JAN-24 5LXV 1 REMARK LINK REVDAT 4 11-JAN-17 5LXV 1 JRNL REVDAT 3 07-DEC-16 5LXV 1 JRNL REVDAT 2 23-NOV-16 5LXV 1 JRNL REVDAT 1 19-OCT-16 5LXV 0 JRNL AUTH P.BULE,V.D.ALVES,A.LEITAO,L.M.FERREIRA,E.A.BAYER,S.P.SMITH, JRNL AUTH 2 H.J.GILBERT,S.NAJMUDIN,C.M.FONTES JRNL TITL SINGLE BINDING MODE INTEGRATION OF HEMICELLULOSE-DEGRADING JRNL TITL 2 ENZYMES VIA ADAPTOR SCAFFOLDINS IN RUMINOCOCCUS FLAVEFACIENS JRNL TITL 3 CELLULOSOME. JRNL REF J. BIOL. CHEM. V. 291 26658 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27875311 JRNL DOI 10.1074/JBC.M116.761643 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.BULE,V.RUIMY-ISRAELI,V.CARDOSO,E.A.BAYER,C.M.FONTES, REMARK 1 AUTH 2 S.NAJMUDIN REMARK 1 TITL OVEREXPRESSION, CRYSTALLIZATION AND PRELIMINARY X-RAY REMARK 1 TITL 2 CHARACTERIZATION OF RUMINOCOCCUS FLAVEFACIENS SCAFFOLDIN C REMARK 1 TITL 3 COHESIN IN COMPLEX WITH A DOCKERIN FROM AN UNCHARACTERIZED REMARK 1 TITL 4 CBM-CONTAINING PROTEIN. REMARK 1 REF ACTA CRYSTALLOGR F STRUCT V. 70 1061 2014 REMARK 1 REF 2 BIOL COMMUN REMARK 1 REFN ESSN 2053-230X REMARK 1 PMID 25084382 REMARK 1 DOI 10.1107/S2053230X14012667 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 16238 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 842 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1175 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3538 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 112 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.20000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : 0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.808 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.304 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.229 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.881 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.903 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3593 ; 0.005 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3308 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4888 ; 0.949 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7666 ; 0.755 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 473 ; 5.372 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;34.957 ;26.400 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 583 ;10.524 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;11.941 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 584 ; 0.056 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4114 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 718 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1898 ; 0.815 ; 1.787 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1897 ; 0.813 ; 1.786 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2366 ; 1.426 ; 2.674 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 2 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 3 172 C 3 172 8862 0.100 0.050 REMARK 3 2 B 889 953 D 889 953 3633 0.060 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 174 REMARK 3 ORIGIN FOR THE GROUP (A): 63.3870 60.7660 119.4140 REMARK 3 T TENSOR REMARK 3 T11: 0.0326 T22: 0.0197 REMARK 3 T33: 0.2065 T12: 0.0162 REMARK 3 T13: -0.0268 T23: -0.0269 REMARK 3 L TENSOR REMARK 3 L11: 4.3979 L22: 2.5456 REMARK 3 L33: 1.8979 L12: -0.0186 REMARK 3 L13: -0.1999 L23: 0.8210 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.1610 S13: 0.7336 REMARK 3 S21: -0.1770 S22: -0.0921 S23: 0.0153 REMARK 3 S31: -0.1743 S32: -0.0988 S33: 0.0753 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 889 B 953 REMARK 3 ORIGIN FOR THE GROUP (A): 82.8090 60.3930 127.6450 REMARK 3 T TENSOR REMARK 3 T11: 0.0197 T22: 0.1150 REMARK 3 T33: 0.4055 T12: -0.0037 REMARK 3 T13: -0.0577 T23: -0.1386 REMARK 3 L TENSOR REMARK 3 L11: 4.0187 L22: 1.2249 REMARK 3 L33: 3.8766 L12: 0.3826 REMARK 3 L13: 1.1510 L23: -0.0672 REMARK 3 S TENSOR REMARK 3 S11: -0.0063 S12: -0.5768 S13: 0.6902 REMARK 3 S21: 0.0399 S22: -0.0032 S23: -0.3373 REMARK 3 S31: -0.0742 S32: 0.1518 S33: 0.0095 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 173 REMARK 3 ORIGIN FOR THE GROUP (A): 62.6340 93.8760 120.9950 REMARK 3 T TENSOR REMARK 3 T11: 0.0241 T22: 0.0355 REMARK 3 T33: 0.1924 T12: -0.0095 REMARK 3 T13: -0.0022 T23: 0.0680 REMARK 3 L TENSOR REMARK 3 L11: 2.7420 L22: 2.0515 REMARK 3 L33: 1.3662 L12: -0.0795 REMARK 3 L13: -0.1961 L23: -0.0763 REMARK 3 S TENSOR REMARK 3 S11: -0.0599 S12: -0.0572 S13: -0.2125 REMARK 3 S21: 0.0045 S22: -0.0050 S23: -0.0184 REMARK 3 S31: 0.1049 S32: -0.1010 S33: 0.0649 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 889 D 953 REMARK 3 ORIGIN FOR THE GROUP (A): 82.2730 94.4450 128.4570 REMARK 3 T TENSOR REMARK 3 T11: 0.0439 T22: 0.0909 REMARK 3 T33: 0.2773 T12: -0.0035 REMARK 3 T13: -0.0482 T23: 0.1185 REMARK 3 L TENSOR REMARK 3 L11: 6.2949 L22: 2.6513 REMARK 3 L33: 3.1012 L12: -0.1401 REMARK 3 L13: 1.0294 L23: 0.0452 REMARK 3 S TENSOR REMARK 3 S11: 0.0486 S12: -0.2604 S13: 0.0503 REMARK 3 S21: 0.1259 S22: -0.0841 S23: -0.4016 REMARK 3 S31: 0.0850 S32: 0.2187 S33: 0.0355 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5LXV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001482. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.3.11 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17195 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 59.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 51.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.32100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: 2CCL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M POTASSIUM THIOCYANATE, 30% W/V REMARK 280 PEG 2000 MME, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.79500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.80000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.36500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.80000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.79500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.36500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 GLY A 2 REMARK 465 GLU A 175 REMARK 465 VAL A 176 REMARK 465 LEU A 177 REMARK 465 GLU A 178 REMARK 465 MET B 866 REMARK 465 GLY B 867 REMARK 465 SER B 868 REMARK 465 SER B 869 REMARK 465 HIS B 870 REMARK 465 HIS B 871 REMARK 465 HIS B 872 REMARK 465 HIS B 873 REMARK 465 HIS B 874 REMARK 465 HIS B 875 REMARK 465 SER B 876 REMARK 465 SER B 877 REMARK 465 GLY B 878 REMARK 465 LEU B 879 REMARK 465 VAL B 880 REMARK 465 PRO B 881 REMARK 465 ARG B 882 REMARK 465 GLY B 883 REMARK 465 SER B 884 REMARK 465 HIS B 885 REMARK 465 MET B 886 REMARK 465 ALA B 887 REMARK 465 SER B 888 REMARK 465 MET C 0 REMARK 465 ALA C 174 REMARK 465 GLU C 175 REMARK 465 VAL C 176 REMARK 465 LEU C 177 REMARK 465 GLU C 178 REMARK 465 MET D 866 REMARK 465 GLY D 867 REMARK 465 SER D 868 REMARK 465 SER D 869 REMARK 465 HIS D 870 REMARK 465 HIS D 871 REMARK 465 HIS D 872 REMARK 465 HIS D 873 REMARK 465 HIS D 874 REMARK 465 HIS D 875 REMARK 465 SER D 876 REMARK 465 SER D 877 REMARK 465 GLY D 878 REMARK 465 LEU D 879 REMARK 465 VAL D 880 REMARK 465 PRO D 881 REMARK 465 ARG D 882 REMARK 465 GLY D 883 REMARK 465 SER D 884 REMARK 465 HIS D 885 REMARK 465 MET D 886 REMARK 465 ALA D 887 REMARK 465 SER D 888 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER C 125 O HOH C 201 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 172 -171.50 -63.73 REMARK 500 ASP C 97 109.91 -59.37 REMARK 500 PRO C 172 -178.19 -61.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 892 OD1 REMARK 620 2 ASP B 894 OD1 81.9 REMARK 620 3 ASP B 896 OD1 89.8 85.8 REMARK 620 4 GLU B 898 O 80.2 161.2 88.3 REMARK 620 5 ASP B 903 OD1 87.5 72.2 158.0 112.6 REMARK 620 6 ASP B 903 OD2 109.0 117.6 151.2 74.2 48.3 REMARK 620 7 HOH B1108 O 162.0 80.1 88.8 117.7 87.1 79.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 923 OD1 REMARK 620 2 ASN B 925 OD1 86.4 REMARK 620 3 ASP B 927 OD1 87.5 81.5 REMARK 620 4 VAL B 929 O 82.5 165.7 89.0 REMARK 620 5 ASP B 934 OD1 87.0 76.2 157.3 112.0 REMARK 620 6 ASP B 934 OD2 120.1 112.6 148.6 80.9 48.9 REMARK 620 7 HOH B1109 O 160.6 82.4 75.3 105.6 105.4 78.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 892 OD1 REMARK 620 2 ASP D 894 OD1 80.9 REMARK 620 3 ASP D 896 OD1 86.6 83.1 REMARK 620 4 GLU D 898 O 79.3 157.7 85.6 REMARK 620 5 ASP D 903 OD1 89.3 74.0 157.2 115.7 REMARK 620 6 ASP D 903 OD2 111.6 121.5 150.4 75.7 50.5 REMARK 620 7 HOH D1109 O 163.4 87.5 80.2 109.4 99.0 84.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 923 OD1 REMARK 620 2 ASN D 925 OD1 84.5 REMARK 620 3 ASP D 927 OD1 86.3 83.0 REMARK 620 4 VAL D 929 O 79.2 162.4 89.3 REMARK 620 5 ASP D 934 OD1 83.9 75.7 157.3 108.7 REMARK 620 6 ASP D 934 OD2 115.6 113.5 152.8 79.9 48.1 REMARK 620 7 HOH D1106 O 163.0 82.3 81.6 112.4 103.0 79.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 1002 DBREF 5LXV A 1 176 UNP G9FCX2 G9FCX2_RUMFL 29 204 DBREF 5LXV B 866 953 PDB 5LXV 5LXV 866 953 DBREF 5LXV C 1 176 UNP G9FCX2 G9FCX2_RUMFL 29 204 DBREF 5LXV D 866 953 PDB 5LXV 5LXV 866 953 SEQADV 5LXV MET A 0 UNP G9FCX2 INITIATING METHIONINE SEQADV 5LXV LEU A 177 UNP G9FCX2 EXPRESSION TAG SEQADV 5LXV GLU A 178 UNP G9FCX2 EXPRESSION TAG SEQADV 5LXV MET C 0 UNP G9FCX2 INITIATING METHIONINE SEQADV 5LXV LEU C 177 UNP G9FCX2 EXPRESSION TAG SEQADV 5LXV GLU C 178 UNP G9FCX2 EXPRESSION TAG SEQRES 1 A 179 MET ALA GLY GLU THR VAL GLN ILE SER ALA SER ASN ALA SEQRES 2 A 179 GLU ALA LYS ALA GLY ASP GLN PHE GLU VAL LYS VAL SER SEQRES 3 A 179 LEU ALA ASP VAL PRO SER THR GLY ILE GLN GLY ILE ASP SEQRES 4 A 179 PHE ALA VAL THR TYR ASP ASN THR VAL VAL THR ILE ASP SEQRES 5 A 179 LYS ILE THR VAL GLY GLU ILE ALA ASP THR LYS ALA ALA SEQRES 6 A 179 SER SER ASP GLN THR ALA SER LEU LEU PRO THR PHE ASP SEQRES 7 A 179 VAL SER ILE GLN ASN SER GLU GLY TYR SER SER VAL ILE SEQRES 8 A 179 TRP SER THR ALA VAL GLU ASP SER SER TYR TRP ILE SER SEQRES 9 A 179 LYS ASP GLY VAL LEU CYS THR ILE THR GLY THR VAL SER SEQRES 10 A 179 SER ASN ALA LYS PRO GLY ALA GLU SER PRO ILE LYS LEU SEQRES 11 A 179 GLU ALA VAL LYS ARG GLU THR TYR VAL GLY SER GLY THR SEQRES 12 A 179 ASP ASN SER SER ILE SER ALA GLY TYR SER ALA ASN ASP SEQRES 13 A 179 LYS ALA VAL LYS TYR THR VAL LYS ALA THR ASN GLY LYS SEQRES 14 A 179 ILE SER VAL PRO SER ALA GLU VAL LEU GLU SEQRES 1 B 88 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 88 LEU VAL PRO ARG GLY SER HIS MET ALA SER VAL TYR GLY SEQRES 3 B 88 ASP LEU ASP GLY ASP GLY GLU VAL ASP VAL PHE ASP LEU SEQRES 4 B 88 ILE LEU MET ARG LYS ALA VAL GLU ASN GLY ASP THR GLU SEQRES 5 B 88 ARG PHE GLU ALA ALA ASP LEU ASN CYS ASP GLY VAL ILE SEQRES 6 B 88 ASP SER ASP ASP LEU THR TYR HIS SER GLU TYR LEU HIS SEQRES 7 B 88 GLY ILE ARG LYS THR LEU PRO VAL GLU TYR SEQRES 1 C 179 MET ALA GLY GLU THR VAL GLN ILE SER ALA SER ASN ALA SEQRES 2 C 179 GLU ALA LYS ALA GLY ASP GLN PHE GLU VAL LYS VAL SER SEQRES 3 C 179 LEU ALA ASP VAL PRO SER THR GLY ILE GLN GLY ILE ASP SEQRES 4 C 179 PHE ALA VAL THR TYR ASP ASN THR VAL VAL THR ILE ASP SEQRES 5 C 179 LYS ILE THR VAL GLY GLU ILE ALA ASP THR LYS ALA ALA SEQRES 6 C 179 SER SER ASP GLN THR ALA SER LEU LEU PRO THR PHE ASP SEQRES 7 C 179 VAL SER ILE GLN ASN SER GLU GLY TYR SER SER VAL ILE SEQRES 8 C 179 TRP SER THR ALA VAL GLU ASP SER SER TYR TRP ILE SER SEQRES 9 C 179 LYS ASP GLY VAL LEU CYS THR ILE THR GLY THR VAL SER SEQRES 10 C 179 SER ASN ALA LYS PRO GLY ALA GLU SER PRO ILE LYS LEU SEQRES 11 C 179 GLU ALA VAL LYS ARG GLU THR TYR VAL GLY SER GLY THR SEQRES 12 C 179 ASP ASN SER SER ILE SER ALA GLY TYR SER ALA ASN ASP SEQRES 13 C 179 LYS ALA VAL LYS TYR THR VAL LYS ALA THR ASN GLY LYS SEQRES 14 C 179 ILE SER VAL PRO SER ALA GLU VAL LEU GLU SEQRES 1 D 88 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 D 88 LEU VAL PRO ARG GLY SER HIS MET ALA SER VAL TYR GLY SEQRES 3 D 88 ASP LEU ASP GLY ASP GLY GLU VAL ASP VAL PHE ASP LEU SEQRES 4 D 88 ILE LEU MET ARG LYS ALA VAL GLU ASN GLY ASP THR GLU SEQRES 5 D 88 ARG PHE GLU ALA ALA ASP LEU ASN CYS ASP GLY VAL ILE SEQRES 6 D 88 ASP SER ASP ASP LEU THR TYR HIS SER GLU TYR LEU HIS SEQRES 7 D 88 GLY ILE ARG LYS THR LEU PRO VAL GLU TYR HET CA B1001 1 HET CA B1002 1 HET CA D1001 1 HET CA D1002 1 HETNAM CA CALCIUM ION FORMUL 5 CA 4(CA 2+) FORMUL 9 HOH *112(H2 O) HELIX 1 AA1 GLU A 57 THR A 61 5 5 HELIX 2 AA2 LYS A 62 ASP A 67 1 6 HELIX 3 AA3 GLN A 68 LEU A 72 5 5 HELIX 4 AA4 ASN A 82 GLU A 84 5 3 HELIX 5 AA5 ASP A 97 TRP A 101 5 5 HELIX 6 AA6 ASP B 900 GLY B 914 1 15 HELIX 7 AA7 ARG B 918 ASP B 923 1 6 HELIX 8 AA8 ASP B 931 HIS B 943 1 13 HELIX 9 AA9 GLU C 57 THR C 61 5 5 HELIX 10 AB1 LYS C 62 ASP C 67 1 6 HELIX 11 AB2 GLN C 68 LEU C 72 5 5 HELIX 12 AB3 ASN C 82 GLU C 84 5 3 HELIX 13 AB4 ASP C 97 TRP C 101 5 5 HELIX 14 AB5 ASP D 900 GLY D 914 1 15 HELIX 15 AB6 ARG D 918 ASP D 923 1 6 HELIX 16 AB7 ASP D 931 HIS D 943 1 13 SHEET 1 AA1 5 VAL A 48 VAL A 55 0 SHEET 2 AA1 5 GLY A 106 VAL A 115 -1 O THR A 112 N ASP A 51 SHEET 3 AA1 5 GLN A 19 ALA A 27 -1 N VAL A 22 O ILE A 111 SHEET 4 AA1 5 THR A 4 ALA A 9 -1 N GLN A 6 O ALA A 27 SHEET 5 AA1 5 THR A 161 THR A 165 1 O LYS A 163 N ILE A 7 SHEET 1 AA2 6 ALA A 12 GLU A 13 0 SHEET 2 AA2 6 GLY A 167 SER A 170 1 O LYS A 168 N ALA A 12 SHEET 3 AA2 6 GLU A 124 GLU A 130 -1 N ILE A 127 O GLY A 167 SHEET 4 AA2 6 GLY A 36 THR A 42 -1 N ALA A 40 O GLU A 130 SHEET 5 AA2 6 TYR A 86 SER A 92 -1 O SER A 87 N VAL A 41 SHEET 6 AA2 6 PHE A 76 GLN A 81 -1 N ASP A 77 O ILE A 90 SHEET 1 AA3 6 ALA A 12 GLU A 13 0 SHEET 2 AA3 6 GLY A 167 SER A 170 1 O LYS A 168 N ALA A 12 SHEET 3 AA3 6 GLU A 124 GLU A 130 -1 N ILE A 127 O GLY A 167 SHEET 4 AA3 6 GLY A 36 THR A 42 -1 N ALA A 40 O GLU A 130 SHEET 5 AA3 6 SER A 148 ALA A 153 -1 O SER A 148 N ASP A 38 SHEET 6 AA3 6 LYS A 156 LYS A 159 -1 O VAL A 158 N TYR A 151 SHEET 1 AA4 5 VAL C 48 VAL C 55 0 SHEET 2 AA4 5 GLY C 106 VAL C 115 -1 O THR C 112 N ASP C 51 SHEET 3 AA4 5 GLN C 19 ALA C 27 -1 N VAL C 22 O ILE C 111 SHEET 4 AA4 5 THR C 4 ALA C 9 -1 N GLN C 6 O ALA C 27 SHEET 5 AA4 5 THR C 161 THR C 165 1 O LYS C 163 N ILE C 7 SHEET 1 AA5 6 ALA C 12 GLU C 13 0 SHEET 2 AA5 6 GLY C 167 SER C 170 1 O LYS C 168 N ALA C 12 SHEET 3 AA5 6 GLU C 124 GLU C 130 -1 N ILE C 127 O GLY C 167 SHEET 4 AA5 6 GLY C 36 THR C 42 -1 N ALA C 40 O GLU C 130 SHEET 5 AA5 6 TYR C 86 SER C 92 -1 O SER C 87 N VAL C 41 SHEET 6 AA5 6 PHE C 76 GLN C 81 -1 N ASP C 77 O ILE C 90 SHEET 1 AA6 6 ALA C 12 GLU C 13 0 SHEET 2 AA6 6 GLY C 167 SER C 170 1 O LYS C 168 N ALA C 12 SHEET 3 AA6 6 GLU C 124 GLU C 130 -1 N ILE C 127 O GLY C 167 SHEET 4 AA6 6 GLY C 36 THR C 42 -1 N ALA C 40 O GLU C 130 SHEET 5 AA6 6 SER C 148 ALA C 153 -1 O SER C 148 N ASP C 38 SHEET 6 AA6 6 LYS C 156 LYS C 159 -1 O VAL C 158 N TYR C 151 SSBOND 1 CYS B 926 CYS D 926 1555 3847 2.36 LINK OD1 ASP B 892 CA CA B1001 1555 1555 2.37 LINK OD1 ASP B 894 CA CA B1001 1555 1555 2.40 LINK OD1 ASP B 896 CA CA B1001 1555 1555 2.45 LINK O GLU B 898 CA CA B1001 1555 1555 2.30 LINK OD1 ASP B 903 CA CA B1001 1555 1555 2.75 LINK OD2 ASP B 903 CA CA B1001 1555 1555 2.59 LINK OD1 ASP B 923 CA CA B1002 1555 1555 2.32 LINK OD1 ASN B 925 CA CA B1002 1555 1555 2.24 LINK OD1 ASP B 927 CA CA B1002 1555 1555 2.50 LINK O VAL B 929 CA CA B1002 1555 1555 2.24 LINK OD1 ASP B 934 CA CA B1002 1555 1555 2.82 LINK OD2 ASP B 934 CA CA B1002 1555 1555 2.42 LINK CA CA B1001 O HOH B1108 1555 1555 2.23 LINK CA CA B1002 O HOH B1109 1555 1555 2.35 LINK OD1 ASP D 892 CA CA D1001 1555 1555 2.41 LINK OD1 ASP D 894 CA CA D1001 1555 1555 2.42 LINK OD1 ASP D 896 CA CA D1001 1555 1555 2.55 LINK O GLU D 898 CA CA D1001 1555 1555 2.32 LINK OD1 ASP D 903 CA CA D1001 1555 1555 2.64 LINK OD2 ASP D 903 CA CA D1001 1555 1555 2.48 LINK OD1 ASP D 923 CA CA D1002 1555 1555 2.43 LINK OD1 ASN D 925 CA CA D1002 1555 1555 2.21 LINK OD1 ASP D 927 CA CA D1002 1555 1555 2.46 LINK O VAL D 929 CA CA D1002 1555 1555 2.28 LINK OD1 ASP D 934 CA CA D1002 1555 1555 2.86 LINK OD2 ASP D 934 CA CA D1002 1555 1555 2.43 LINK CA CA D1001 O HOH D1109 1555 1555 2.42 LINK CA CA D1002 O HOH D1106 1555 1555 2.17 CISPEP 1 LEU B 949 PRO B 950 0 1.30 CISPEP 2 LEU D 949 PRO D 950 0 1.53 SITE 1 AC1 6 ASP B 892 ASP B 894 ASP B 896 GLU B 898 SITE 2 AC1 6 ASP B 903 HOH B1108 SITE 1 AC2 6 ASP B 923 ASN B 925 ASP B 927 VAL B 929 SITE 2 AC2 6 ASP B 934 HOH B1109 SITE 1 AC3 6 ASP D 892 ASP D 894 ASP D 896 GLU D 898 SITE 2 AC3 6 ASP D 903 HOH D1109 SITE 1 AC4 6 ASP D 923 ASN D 925 ASP D 927 VAL D 929 SITE 2 AC4 6 ASP D 934 HOH D1106 CRYST1 59.590 66.730 109.600 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016781 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014986 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009124 0.00000