HEADER TRANSCRIPTION 23-SEP-16 5LY0 TITLE CRYSTAL STRUCTURE OF LOB DOMAIN OF RAMOSA2 FROM WHEAT COMPND MOL_ID: 1; COMPND 2 MOLECULE: LOB FAMILY TRANSFACTOR RAMOSA2.1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: LOB DOMAIN, UNP RESIDUES 17-147; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRITICUM TURGIDUM; SOURCE 3 ORGANISM_COMMON: DURUM WHEAT; SOURCE 4 ORGANISM_TAXID: 4571; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: 2566; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21A KEYWDS LOB DOMAIN, RAMOSA2, DIMERIZATION, TRANSCRIPTION FACTOR, DNA BINDING, KEYWDS 2 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR X.-B.WEI,B.ZHANG,W.-F.CHEN,S.-H.FAN,S.RETY,X.-G.XI REVDAT 4 08-MAY-24 5LY0 1 REMARK REVDAT 3 27-FEB-19 5LY0 1 JRNL REVDAT 2 28-NOV-18 5LY0 1 JRNL REVDAT 1 25-OCT-17 5LY0 0 JRNL AUTH W.F.CHEN,X.B.WEI,S.RETY,L.Y.HUANG,N.N.LIU,S.X.DOU,X.G.XI JRNL TITL STRUCTURAL ANALYSIS REVEALS A "MOLECULAR CALIPERS" MECHANISM JRNL TITL 2 FOR A LATERAL ORGAN BOUNDARIES DOMAIN TRANSCRIPTION FACTOR JRNL TITL 3 PROTEIN FROM WHEAT. JRNL REF J. BIOL. CHEM. V. 294 142 2019 JRNL REFN ESSN 1083-351X JRNL PMID 30425099 JRNL DOI 10.1074/JBC.RA118.003956 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2443: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 19838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.6814 - 3.5894 0.99 2850 143 0.1785 0.2129 REMARK 3 2 3.5894 - 2.8491 1.00 2742 124 0.2019 0.2225 REMARK 3 3 2.8491 - 2.4890 1.00 2684 141 0.2107 0.2363 REMARK 3 4 2.4890 - 2.2614 1.00 2658 139 0.2053 0.2429 REMARK 3 5 2.2614 - 2.0993 1.00 2662 145 0.2180 0.2469 REMARK 3 6 2.0993 - 1.9755 1.00 2630 138 0.2478 0.2728 REMARK 3 7 1.9755 - 1.8766 0.99 2647 135 0.3014 0.3429 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 1719 REMARK 3 ANGLE : 0.525 2330 REMARK 3 CHIRALITY : 0.035 253 REMARK 3 PLANARITY : 0.004 308 REMARK 3 DIHEDRAL : 10.901 1057 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9213 61.7394 23.5767 REMARK 3 T TENSOR REMARK 3 T11: 0.2639 T22: 0.1734 REMARK 3 T33: 0.2687 T12: 0.0034 REMARK 3 T13: -0.0102 T23: -0.0426 REMARK 3 L TENSOR REMARK 3 L11: 6.9299 L22: 6.3254 REMARK 3 L33: 5.3892 L12: -2.2965 REMARK 3 L13: -2.5283 L23: -0.3899 REMARK 3 S TENSOR REMARK 3 S11: 0.0376 S12: -0.0263 S13: 0.3465 REMARK 3 S21: -0.0905 S22: 0.0575 S23: -0.1293 REMARK 3 S31: -0.5057 S32: 0.0143 S33: -0.0470 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8884 51.4085 24.5661 REMARK 3 T TENSOR REMARK 3 T11: 0.2954 T22: 0.2548 REMARK 3 T33: 0.3152 T12: 0.0144 REMARK 3 T13: 0.0332 T23: -0.0125 REMARK 3 L TENSOR REMARK 3 L11: 5.6292 L22: 5.8252 REMARK 3 L33: 5.3323 L12: 5.3753 REMARK 3 L13: 5.2440 L23: 5.0821 REMARK 3 S TENSOR REMARK 3 S11: -0.0806 S12: -0.2679 S13: -0.0148 REMARK 3 S21: -0.0875 S22: -0.0091 S23: -0.0940 REMARK 3 S31: -0.0590 S32: 0.0019 S33: -0.1431 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8830 47.4353 25.3744 REMARK 3 T TENSOR REMARK 3 T11: 0.1330 T22: 0.2185 REMARK 3 T33: 0.2178 T12: -0.0177 REMARK 3 T13: -0.0283 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 2.9435 L22: 6.8779 REMARK 3 L33: 7.3641 L12: -1.3260 REMARK 3 L13: -2.1518 L23: 4.2363 REMARK 3 S TENSOR REMARK 3 S11: 0.0989 S12: 0.2366 S13: 0.1511 REMARK 3 S21: -0.0562 S22: -0.3106 S23: 0.1582 REMARK 3 S31: -0.1559 S32: -0.7350 S33: 0.1217 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 101 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7485 19.9790 42.9933 REMARK 3 T TENSOR REMARK 3 T11: 0.2794 T22: 0.2882 REMARK 3 T33: 0.3410 T12: -0.0248 REMARK 3 T13: -0.0252 T23: 0.0661 REMARK 3 L TENSOR REMARK 3 L11: 1.7625 L22: 7.9160 REMARK 3 L33: 4.7813 L12: 1.4158 REMARK 3 L13: -1.5366 L23: -5.3601 REMARK 3 S TENSOR REMARK 3 S11: -0.3241 S12: -0.2148 S13: -0.3729 REMARK 3 S21: -0.1737 S22: -0.0086 S23: -0.4718 REMARK 3 S31: 0.3884 S32: -0.2722 S33: 0.4902 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2969 37.2722 11.3371 REMARK 3 T TENSOR REMARK 3 T11: 0.3257 T22: 0.3270 REMARK 3 T33: 0.2674 T12: 0.0531 REMARK 3 T13: -0.0001 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 4.8823 L22: 3.4861 REMARK 3 L33: 6.9995 L12: -0.6781 REMARK 3 L13: -0.6178 L23: 2.5668 REMARK 3 S TENSOR REMARK 3 S11: 0.0921 S12: 0.9241 S13: -0.0310 REMARK 3 S21: -0.6462 S22: -0.3152 S23: -0.0007 REMARK 3 S31: -0.3108 S32: -0.3520 S33: 0.2846 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2881 26.5418 47.8597 REMARK 3 T TENSOR REMARK 3 T11: 0.3722 T22: 0.2635 REMARK 3 T33: 0.3263 T12: 0.0052 REMARK 3 T13: -0.0332 T23: 0.0520 REMARK 3 L TENSOR REMARK 3 L11: 3.1686 L22: 5.6869 REMARK 3 L33: 3.3309 L12: -4.9807 REMARK 3 L13: 4.9086 L23: -4.4803 REMARK 3 S TENSOR REMARK 3 S11: -0.5633 S12: -0.3177 S13: 0.0771 REMARK 3 S21: 0.8320 S22: 0.3912 S23: -0.3144 REMARK 3 S31: -0.8401 S32: -0.5163 S33: 0.0733 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5LY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001550. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19838 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.877 REMARK 200 RESOLUTION RANGE LOW (A) : 46.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.05241 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.250 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE TRIBASIC DIHYDRATE 0.1M REMARK 280 PH 5.5 PEG 1000 22%, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.67250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.66700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.60300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.66700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.67250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.60300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 PRO A 19 REMARK 465 THR A 20 REMARK 465 THR A 21 REMARK 465 PRO A 22 REMARK 465 GLY A 23 REMARK 465 ALA A 24 REMARK 465 GLY A 25 REMARK 465 GLU A 134 REMARK 465 LEU A 135 REMARK 465 GLY A 136 REMARK 465 GLY A 137 REMARK 465 ILE A 138 REMARK 465 PRO A 139 REMARK 465 THR A 140 REMARK 465 ALA A 141 REMARK 465 LEU A 142 REMARK 465 PRO A 143 REMARK 465 VAL A 144 REMARK 465 VAL A 145 REMARK 465 THR A 146 REMARK 465 ALA A 147 REMARK 465 ALA B 17 REMARK 465 ALA B 18 REMARK 465 PRO B 19 REMARK 465 THR B 20 REMARK 465 THR B 21 REMARK 465 PRO B 22 REMARK 465 GLY B 23 REMARK 465 ALA B 24 REMARK 465 GLY B 25 REMARK 465 ALA B 26 REMARK 465 GLU B 134 REMARK 465 LEU B 135 REMARK 465 GLY B 136 REMARK 465 GLY B 137 REMARK 465 ILE B 138 REMARK 465 PRO B 139 REMARK 465 THR B 140 REMARK 465 ALA B 141 REMARK 465 LEU B 142 REMARK 465 PRO B 143 REMARK 465 VAL B 144 REMARK 465 VAL B 145 REMARK 465 THR B 146 REMARK 465 ALA B 147 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 126 HH12 ARG A 129 1.57 REMARK 500 O HOH A 357 O HOH A 360 1.88 REMARK 500 O HOH B 316 O HOH B 349 1.97 REMARK 500 O HOH A 364 O HOH A 376 2.08 REMARK 500 OE1 GLN A 54 O HOH A 301 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH TYR B 89 O CYS B 132 4456 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 35 -14.01 77.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 28 SG REMARK 620 2 CYS A 31 SG 105.9 REMARK 620 3 CYS A 38 SG 112.7 110.8 REMARK 620 4 CYS A 42 SG 110.5 102.1 114.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 28 SG REMARK 620 2 CYS B 31 SG 104.5 REMARK 620 3 CYS B 38 SG 118.6 110.8 REMARK 620 4 CYS B 42 SG 110.9 91.3 116.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 201 DBREF 5LY0 A 17 147 UNP D9MPF3 D9MPF3_TRITD 17 147 DBREF 5LY0 B 17 147 UNP D9MPF3 D9MPF3_TRITD 17 147 SEQADV 5LY0 LYS A 32 UNP D9MPF3 GLU 32 CONFLICT SEQADV 5LY0 LYS B 32 UNP D9MPF3 GLU 32 CONFLICT SEQRES 1 A 131 ALA ALA PRO THR THR PRO GLY ALA GLY ALA PRO CYS ALA SEQRES 2 A 131 ALA CYS LYS PHE LEU ARG ARG LYS CYS LEU PRO GLY CYS SEQRES 3 A 131 VAL PHE ALA PRO TYR PHE PRO PRO GLU GLU PRO GLN LYS SEQRES 4 A 131 PHE ALA ASN VAL HIS LYS VAL PHE GLY ALA SER ASN VAL SEQRES 5 A 131 THR LYS LEU LEU ASN GLU LEU PRO PRO HIS GLN ARG GLU SEQRES 6 A 131 ASP ALA VAL SER SER LEU ALA TYR GLU ALA GLU ALA ARG SEQRES 7 A 131 VAL LYS ASP PRO VAL TYR GLY CYS VAL GLY ALA ILE SER SEQRES 8 A 131 VAL LEU GLN ARG GLN VAL HIS ARG LEU GLN LYS GLU LEU SEQRES 9 A 131 ASP ALA ALA HIS THR GLU LEU LEU ARG TYR ALA CYS GLY SEQRES 10 A 131 GLU LEU GLY GLY ILE PRO THR ALA LEU PRO VAL VAL THR SEQRES 11 A 131 ALA SEQRES 1 B 131 ALA ALA PRO THR THR PRO GLY ALA GLY ALA PRO CYS ALA SEQRES 2 B 131 ALA CYS LYS PHE LEU ARG ARG LYS CYS LEU PRO GLY CYS SEQRES 3 B 131 VAL PHE ALA PRO TYR PHE PRO PRO GLU GLU PRO GLN LYS SEQRES 4 B 131 PHE ALA ASN VAL HIS LYS VAL PHE GLY ALA SER ASN VAL SEQRES 5 B 131 THR LYS LEU LEU ASN GLU LEU PRO PRO HIS GLN ARG GLU SEQRES 6 B 131 ASP ALA VAL SER SER LEU ALA TYR GLU ALA GLU ALA ARG SEQRES 7 B 131 VAL LYS ASP PRO VAL TYR GLY CYS VAL GLY ALA ILE SER SEQRES 8 B 131 VAL LEU GLN ARG GLN VAL HIS ARG LEU GLN LYS GLU LEU SEQRES 9 B 131 ASP ALA ALA HIS THR GLU LEU LEU ARG TYR ALA CYS GLY SEQRES 10 B 131 GLU LEU GLY GLY ILE PRO THR ALA LEU PRO VAL VAL THR SEQRES 11 B 131 ALA HET ZN A 201 1 HET ZN B 201 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *132(H2 O) HELIX 1 AA1 CYS A 28 ARG A 35 1 8 HELIX 2 AA2 GLU A 52 PHE A 63 1 12 HELIX 3 AA3 GLY A 64 LEU A 75 1 12 HELIX 4 AA4 PRO A 76 ASP A 97 1 22 HELIX 5 AA5 GLY A 101 CYS A 132 1 32 HELIX 6 AA6 CYS B 28 ARG B 35 1 8 HELIX 7 AA7 GLU B 52 PHE B 63 1 12 HELIX 8 AA8 GLY B 64 GLU B 74 1 11 HELIX 9 AA9 PRO B 76 HIS B 78 5 3 HELIX 10 AB1 GLN B 79 ASP B 97 1 19 HELIX 11 AB2 CYS B 102 CYS B 132 1 31 LINK SG CYS A 28 ZN ZN A 201 1555 1555 2.41 LINK SG CYS A 31 ZN ZN A 201 1555 1555 2.36 LINK SG CYS A 38 ZN ZN A 201 1555 1555 2.40 LINK SG CYS A 42 ZN ZN A 201 1555 1555 2.36 LINK SG CYS B 28 ZN ZN B 201 1555 1555 2.39 LINK SG CYS B 31 ZN ZN B 201 1555 1555 2.30 LINK SG CYS B 38 ZN ZN B 201 1555 1555 2.38 LINK SG CYS B 42 ZN ZN B 201 1555 1555 2.35 SITE 1 AC1 4 CYS A 28 CYS A 31 CYS A 38 CYS A 42 SITE 1 AC2 4 CYS B 28 CYS B 31 CYS B 38 CYS B 42 CRYST1 29.345 85.206 93.334 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034077 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011736 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010714 0.00000