HEADER HYDROLASE 28-SEP-16 5LYL TITLE CRYSTAL STRUCTURE OF 1 IN COMPLEX WITH TAFCPB COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOXYPEPTIDASE B; COMPND 3 CHAIN: A; COMPND 4 EC: 3.4.17.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: CPB1, CPB; SOURCE 6 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922 KEYWDS TAFINIZED CARBOXYPEPTIDASE B, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.SCHREUDER,A.LIESUM,P.LOENZE REVDAT 2 21-DEC-16 5LYL 1 JRNL REVDAT 1 26-OCT-16 5LYL 0 JRNL AUTH N.HALLAND,J.CZECH,W.CZECHTIZKY,A.EVERS,M.FOLLMANN, JRNL AUTH 2 M.KOHLMANN,H.A.SCHREUDER,C.KALLUS JRNL TITL SULFAMIDE AS ZINC BINDING MOTIF IN SMALL MOLECULE INHIBITORS JRNL TITL 2 OF ACTIVATED THROMBIN ACTIVATABLE FIBRINOLYSIS INHIBITOR JRNL TITL 3 (TAFIA). JRNL REF J. MED. CHEM. V. 59 9567 2016 JRNL REFN ISSN 1520-4804 JRNL PMID 27749053 JRNL DOI 10.1021/ACS.JMEDCHEM.6B01276 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 27051 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.145 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1936 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.1650 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2446 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 646 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.123 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.272 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2557 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3487 ; 1.259 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 304 ; 5.781 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 119 ;33.336 ;24.034 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 395 ;13.807 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;16.663 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 371 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1958 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1297 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1764 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 515 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.063 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.144 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 63 ; 0.172 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.030 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1557 ; 0.678 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2439 ; 1.077 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1188 ; 1.905 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1048 ; 2.733 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LYL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1200001591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29051 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 82.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 11.20 REMARK 200 R MERGE FOR SHELL (I) : 0.46700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: REFMAC 5.2.0019 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PURIFIED PROTEIN WAS DISSOLVED IN REMARK 280 50 MM TRIS-HCL, PH 7.5 AND CONCENTRATED TO 11 MG/ML. 1 UL OF REMARK 280 PROTEIN SOLUTION WAS EQUILIBRATED AGAINST 1 UL OF RESERVOIR REMARK 280 SOLUTION CONTAINING 16-20% PEG3350, 100 MM MES PH 5.5 AND 50 MM REMARK 280 ZNACETATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.56550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.25650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.25650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.78275 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.25650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.25650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.34825 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.25650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.25650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.78275 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.25650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.25650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 71.34825 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 47.56550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 403 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 961 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 986 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1049 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 171 NH2 ARG A 184 2.15 REMARK 500 O HOH A 1078 O HOH A 1129 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 35 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 184 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 122 -44.25 -131.34 REMARK 500 SER A 199 -3.73 133.61 REMARK 500 GLN A 200 65.79 60.48 REMARK 500 LEU A 247 -77.42 -117.83 REMARK 500 ALA A 250 77.48 -150.88 REMARK 500 ASP A 273 -145.20 -109.36 REMARK 500 ILE A 280 48.10 -89.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1131 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A1132 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH A1133 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1134 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A1135 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A1136 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH A1137 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A1138 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A1139 DISTANCE = 6.78 ANGSTROMS REMARK 525 HOH A1140 DISTANCE = 6.83 ANGSTROMS REMARK 525 HOH A1141 DISTANCE = 6.95 ANGSTROMS REMARK 525 HOH A1142 DISTANCE = 7.08 ANGSTROMS REMARK 525 HOH A1143 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH A1144 DISTANCE = 8.57 ANGSTROMS REMARK 525 HOH A1145 DISTANCE = 8.99 ANGSTROMS REMARK 525 HOH A1146 DISTANCE = 9.58 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 69 ND1 REMARK 620 2 GLU A 72 OE1 124.9 REMARK 620 3 GLU A 72 OE2 89.1 57.3 REMARK 620 4 HIS A 196 ND1 105.2 104.9 162.0 REMARK 620 5 T5F A 404 O1 117.8 102.8 85.4 97.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 85 OE2 REMARK 620 2 GLU A 291 OE1 90.0 REMARK 620 3 GLU A 291 OE2 93.5 58.6 REMARK 620 4 HOH A 515 O 88.8 152.0 93.6 REMARK 620 5 ASP A 159 OD1 49.6 49.4 50.4 112.1 REMARK 620 6 ASP A 162 OD2 51.1 48.5 49.1 112.5 1.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 307 NE2 REMARK 620 2 HOH A 679 O 89.1 REMARK 620 3 HIS A 307 NE2 0.0 89.1 REMARK 620 4 HOH A 679 O 96.1 167.5 96.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue T5F A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5LYI RELATED DB: PDB DBREF 5LYL A 4 308 UNP P09955 CBPB1_PIG 111 416 SEQADV 5LYL ILE A 68 UNP P09955 PHE 175 CONFLICT SEQADV 5LYL SER A 194 UNP P09955 THR 302 CONFLICT SEQADV 5LYL HIS A 201 UNP P09955 MET 309 CONFLICT SEQADV 5LYL VAL A 203 UNP P09955 LEU 311 CONFLICT SEQADV 5LYL LEU A 247 UNP P09955 ILE 355 CONFLICT SEQADV 5LYL LEU A 249 UNP P09955 PRO 357 CONFLICT SEQADV 5LYL PRO A 251 UNP P09955 ALA 359 CONFLICT SEQADV 5LYL GLY A 254 UNP P09955 SER 362 CONFLICT SEQADV 5LYL TYR A 309 UNP P09955 EXPRESSION TAG SEQRES 1 A 307 THR THR GLY HIS SER TYR GLU LYS TYR ASN ASN TRP GLU SEQRES 2 A 307 THR ILE GLU ALA TRP THR LYS GLN VAL THR SER GLU ASN SEQRES 3 A 307 PRO ASP LEU ILE SER ARG THR ALA ILE GLY THR THR PHE SEQRES 4 A 307 LEU GLY ASN ASN ILE TYR LEU LEU LYS VAL GLY LYS PRO SEQRES 5 A 307 GLY PRO ASN LYS PRO ALA ILE PHE MET ASP CYS GLY ILE SEQRES 6 A 307 HIS ALA ARG GLU TRP ILE SER HIS ALA PHE CYS GLN TRP SEQRES 7 A 307 PHE VAL ARG GLU ALA VAL LEU THR TYR GLY TYR GLU SER SEQRES 8 A 307 HIS MET THR GLU PHE LEU ASN LYS LEU ASP PHE TYR VAL SEQRES 9 A 307 LEU PRO VAL LEU ASN ILE ASP GLY TYR ILE TYR THR TRP SEQRES 10 A 307 THR LYS ASN ARG MET TRP ARG LYS THR ARG SER THR ASN SEQRES 11 A 307 ALA GLY THR THR CYS ILE GLY THR ASP PRO ASN ARG ASN SEQRES 12 A 307 PHE ASP ALA GLY TRP CYS THR THR GLY ALA SER THR ASP SEQRES 13 A 307 PRO CYS ASP GLU THR TYR CYS GLY SER ALA ALA GLU SER SEQRES 14 A 307 GLU LYS GLU THR LYS ALA LEU ALA ASP PHE ILE ARG ASN SEQRES 15 A 307 ASN LEU SER SER ILE LYS ALA TYR LEU SER ILE HIS SER SEQRES 16 A 307 TYR SER GLN HIS ILE VAL TYR PRO TYR SER TYR ASP TYR SEQRES 17 A 307 LYS LEU PRO GLU ASN ASN ALA GLU LEU ASN ASN LEU ALA SEQRES 18 A 307 LYS ALA ALA VAL LYS GLU LEU ALA THR LEU TYR GLY THR SEQRES 19 A 307 LYS TYR THR TYR GLY PRO GLY ALA THR THR LEU TYR LEU SEQRES 20 A 307 ALA PRO GLY GLY GLY ASP ASP TRP ALA TYR ASP GLN GLY SEQRES 21 A 307 ILE LYS TYR SER PHE THR PHE GLU LEU ARG ASP LYS GLY SEQRES 22 A 307 ARG TYR GLY PHE ILE LEU PRO GLU SER GLN ILE GLN ALA SEQRES 23 A 307 THR CYS GLU GLU THR MET LEU ALA ILE LYS TYR VAL THR SEQRES 24 A 307 ASN TYR VAL LEU GLY HIS LEU TYR HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET T5F A 404 35 HETNAM ZN ZINC ION HETNAM T5F (2~{S})-2-[[(2~{S})-1-(1-ADAMANTYLAMINO)-3-CYCLOHEXYL- HETNAM 2 T5F 1-OXIDANYLIDENE-PROPAN-2-YL]SULFAMOYLAMINO]-6-AZANYL- HETNAM 3 T5F HEXANOIC ACID HETSYN T5F TAFCPB FORMUL 2 ZN 3(ZN 2+) FORMUL 5 T5F C25 H44 N4 O5 S FORMUL 6 HOH *646(H2 O) HELIX 1 AA1 ASN A 14 ASN A 29 1 16 HELIX 2 AA2 GLU A 72 TYR A 90 1 19 HELIX 3 AA3 GLU A 93 LEU A 103 1 11 HELIX 4 AA4 ASN A 112 LYS A 122 1 11 HELIX 5 AA5 ASP A 142 ASN A 146 5 5 HELIX 6 AA6 GLU A 173 ASN A 186 1 14 HELIX 7 AA7 ASN A 215 THR A 232 1 18 HELIX 8 AA8 GLY A 243 LEU A 247 1 5 HELIX 9 AA9 GLY A 253 GLN A 261 1 9 HELIX 10 AB1 PRO A 282 SER A 284 5 3 HELIX 11 AB2 GLN A 285 GLY A 306 1 22 SHEET 1 AA1 8 ILE A 33 THR A 40 0 SHEET 2 AA1 8 ASN A 46 VAL A 52 -1 O LYS A 51 N SER A 34 SHEET 3 AA1 8 ASP A 104 LEU A 108 -1 O VAL A 107 N LEU A 50 SHEET 4 AA1 8 ALA A 61 CYS A 66 1 N MET A 64 O TYR A 106 SHEET 5 AA1 8 ILE A 189 HIS A 196 1 O LYS A 190 N ALA A 61 SHEET 6 AA1 8 TYR A 265 GLU A 270 1 O PHE A 269 N HIS A 196 SHEET 7 AA1 8 HIS A 201 TYR A 204 -1 N HIS A 201 O GLU A 270 SHEET 8 AA1 8 THR A 239 PRO A 242 1 O THR A 239 N ILE A 202 SSBOND 1 CYS A 66 CYS A 79 1555 1555 2.04 SSBOND 2 CYS A 138 CYS A 161 1555 1555 2.02 SSBOND 3 CYS A 152 CYS A 166 1555 1555 2.04 LINK ND1 HIS A 69 ZN ZN A 401 1555 1555 2.16 LINK OE1 GLU A 72 ZN ZN A 401 1555 1555 2.03 LINK OE2 GLU A 72 ZN ZN A 401 1555 1555 2.47 LINK OE2 GLU A 85 ZN ZN A 402 1555 1555 2.17 LINK ND1 HIS A 196 ZN ZN A 401 1555 1555 2.08 LINK OE1 GLU A 291 ZN ZN A 402 1555 1555 2.08 LINK OE2 GLU A 291 ZN ZN A 402 1555 1555 2.35 LINK NE2 HIS A 307 ZN ZN A 403 1555 1555 2.15 LINK ZN ZN A 401 O1 T5F A 404 1555 1555 1.96 LINK ZN ZN A 402 O HOH A 515 1555 1555 2.15 LINK ZN ZN A 403 O HOH A 679 1555 1555 2.13 LINK OD1 ASP A 159 ZN ZN A 402 1555 4564 1.99 LINK OD2 ASP A 162 ZN ZN A 402 1555 4564 2.14 LINK NE2 HIS A 307 ZN ZN A 403 1555 8666 2.16 LINK ZN ZN A 403 O HOH A 679 1555 8666 2.11 CISPEP 1 SER A 197 TYR A 198 0 -6.85 CISPEP 2 PRO A 205 TYR A 206 0 2.17 CISPEP 3 ARG A 272 ASP A 273 0 -3.29 SITE 1 AC1 4 HIS A 69 GLU A 72 HIS A 196 T5F A 404 SITE 1 AC2 5 GLU A 85 ASP A 159 ASP A 162 GLU A 291 SITE 2 AC2 5 HOH A 515 SITE 1 AC3 2 HIS A 307 HOH A 679 SITE 1 AC4 20 HIS A 69 ARG A 71 GLU A 72 ARG A 127 SITE 2 AC4 20 ASN A 144 ARG A 145 THR A 164 HIS A 196 SITE 3 AC4 20 SER A 197 TYR A 198 SER A 207 THR A 232 SITE 4 AC4 20 TYR A 248 ASP A 255 GLU A 270 PHE A 279 SITE 5 AC4 20 ZN A 401 HOH A 511 HOH A 572 HOH A 615 CRYST1 82.513 82.513 95.131 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012119 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012119 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010512 0.00000