HEADER TRANSCRIPTION 28-SEP-16 5LYQ
TITLE CRYSTAL STRUCTURE OF THE RETINOIC ACID RECEPTOR ALPHA IN COMPLEX WITH
TITLE 2 A SYNTHETIC SPIROKETAL AGONIST AND A FRAGMENT OF THE TIF2 CO-
TITLE 3 ACTIVATOR.
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: RETINOIC ACID RECEPTOR RXR-ALPHA;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 223-462;
COMPND 5 SYNONYM: NUCLEAR RECEPTOR SUBFAMILY 2 GROUP B MEMBER 1,RETINOID X
COMPND 6 RECEPTOR ALPHA;
COMPND 7 ENGINEERED: YES;
COMPND 8 MOL_ID: 2;
COMPND 9 MOLECULE: HIS-LYS-ILE-LEU-HIS-ARG-LEU-LEU-GLN-ASP;
COMPND 10 CHAIN: B;
COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: RXRA, NR2B1;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET15B;
SOURCE 10 MOL_ID: 2;
SOURCE 11 SYNTHETIC: YES;
SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 13 ORGANISM_COMMON: HUMAN;
SOURCE 14 ORGANISM_TAXID: 9606
KEYWDS NUCLEAR RECEPTOR, RXR, SPIROKETAL, TRANSCRIPTION
EXPDTA X-RAY DIFFRACTION
AUTHOR S.A.ANDREI,C.OTTMANN
REVDAT 5 17-JAN-24 5LYQ 1 REMARK
REVDAT 4 10-AUG-22 5LYQ 1 REMARK
REVDAT 3 13-SEP-17 5LYQ 1 REMARK
REVDAT 2 10-MAY-17 5LYQ 1 JRNL
REVDAT 1 26-APR-17 5LYQ 0
JRNL AUTH M.SCHEEPSTRA,S.A.ANDREI,M.Y.UNVER,A.K.H.HIRSCH,S.LEYSEN,
JRNL AUTH 2 C.OTTMANN,L.BRUNSVELD,L.G.MILROY
JRNL TITL DESIGNED SPIROKETAL PROTEIN MODULATION.
JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 56 5480 2017
JRNL REFN ESSN 1521-3773
JRNL PMID 28407400
JRNL DOI 10.1002/ANIE.201612504
REMARK 2
REMARK 2 RESOLUTION. 2.17 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.58
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330
REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9
REMARK 3 NUMBER OF REFLECTIONS : 13159
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.214
REMARK 3 R VALUE (WORKING SET) : 0.212
REMARK 3 FREE R VALUE : 0.253
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750
REMARK 3 FREE R VALUE TEST SET COUNT : 625
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 42.5902 - 3.4442 0.99 3317 164 0.1703 0.2032
REMARK 3 2 3.4442 - 2.7339 1.00 3149 151 0.1991 0.2857
REMARK 3 3 2.7339 - 2.3884 1.00 3086 164 0.2387 0.2477
REMARK 3 4 2.3884 - 2.1700 0.97 2982 146 0.3731 0.3942
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.260
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 26.50
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.89
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.003 1952
REMARK 3 ANGLE : 0.560 2663
REMARK 3 CHIRALITY : 0.037 295
REMARK 3 PLANARITY : 0.004 344
REMARK 3 DIHEDRAL : 15.527 1198
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 6
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 263 )
REMARK 3 ORIGIN FOR THE GROUP (A): -8.5737 -19.8649 -23.1542
REMARK 3 T TENSOR
REMARK 3 T11: 0.5566 T22: 0.1682
REMARK 3 T33: 0.2942 T12: 0.0310
REMARK 3 T13: 0.0703 T23: 0.0080
REMARK 3 L TENSOR
REMARK 3 L11: 5.7593 L22: 5.4843
REMARK 3 L33: 3.7792 L12: -2.8027
REMARK 3 L13: 0.8614 L23: -2.0689
REMARK 3 S TENSOR
REMARK 3 S11: 0.2595 S12: 0.2079 S13: -0.5057
REMARK 3 S21: -0.1407 S22: -0.2428 S23: 0.2188
REMARK 3 S31: 0.6124 S32: -0.1676 S33: -0.1525
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 264 THROUGH 293 )
REMARK 3 ORIGIN FOR THE GROUP (A): -16.3933 -11.4614 -20.0532
REMARK 3 T TENSOR
REMARK 3 T11: 0.3040 T22: 0.1486
REMARK 3 T33: 0.2237 T12: -0.0284
REMARK 3 T13: 0.0429 T23: 0.0722
REMARK 3 L TENSOR
REMARK 3 L11: 0.7534 L22: 1.8795
REMARK 3 L33: 1.0360 L12: 0.0643
REMARK 3 L13: -0.7844 L23: -0.7101
REMARK 3 S TENSOR
REMARK 3 S11: -0.0245 S12: -0.1562 S13: -0.2710
REMARK 3 S21: 0.1922 S22: 0.1267 S23: 0.3082
REMARK 3 S31: 0.3233 S32: -0.2146 S33: -0.1205
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 294 THROUGH 375 )
REMARK 3 ORIGIN FOR THE GROUP (A): -12.0845 -7.4614 -33.0548
REMARK 3 T TENSOR
REMARK 3 T11: 0.2174 T22: 0.1498
REMARK 3 T33: 0.2109 T12: -0.0167
REMARK 3 T13: 0.0199 T23: -0.0113
REMARK 3 L TENSOR
REMARK 3 L11: 2.0354 L22: 2.0278
REMARK 3 L33: 2.8076 L12: -0.3446
REMARK 3 L13: 0.3447 L23: -1.5710
REMARK 3 S TENSOR
REMARK 3 S11: 0.0718 S12: 0.2431 S13: -0.1062
REMARK 3 S21: -0.1673 S22: 0.0072 S23: 0.1976
REMARK 3 S31: 0.4134 S32: -0.1110 S33: -0.0738
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 376 THROUGH 442 )
REMARK 3 ORIGIN FOR THE GROUP (A): -2.7984 -5.8077 -24.8283
REMARK 3 T TENSOR
REMARK 3 T11: 0.2703 T22: 0.1740
REMARK 3 T33: 0.2118 T12: 0.0251
REMARK 3 T13: 0.0106 T23: 0.0167
REMARK 3 L TENSOR
REMARK 3 L11: 2.5652 L22: 1.6037
REMARK 3 L33: 1.8096 L12: -0.6150
REMARK 3 L13: -0.7978 L23: 0.6426
REMARK 3 S TENSOR
REMARK 3 S11: 0.0633 S12: 0.0499 S13: -0.0763
REMARK 3 S21: -0.0026 S22: -0.0728 S23: -0.1271
REMARK 3 S31: 0.3846 S32: 0.2986 S33: 0.0231
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 443 THROUGH 458 )
REMARK 3 ORIGIN FOR THE GROUP (A): -24.8035 0.9140 -20.7586
REMARK 3 T TENSOR
REMARK 3 T11: 0.3485 T22: 0.2791
REMARK 3 T33: 0.3980 T12: 0.0419
REMARK 3 T13: 0.1214 T23: 0.0478
REMARK 3 L TENSOR
REMARK 3 L11: 7.1024 L22: 6.4085
REMARK 3 L33: 2.5601 L12: 0.8074
REMARK 3 L13: 3.1350 L23: -1.8301
REMARK 3 S TENSOR
REMARK 3 S11: -0.2407 S12: -0.3000 S13: 0.4503
REMARK 3 S21: 0.5837 S22: 0.1575 S23: 0.7119
REMARK 3 S31: -0.6939 S32: -0.5302 S33: 0.1358
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 472 THROUGH 481 )
REMARK 3 ORIGIN FOR THE GROUP (A): -20.6063 -8.4385 -9.1121
REMARK 3 T TENSOR
REMARK 3 T11: 0.4730 T22: 0.3309
REMARK 3 T33: 0.3195 T12: -0.1362
REMARK 3 T13: 0.1950 T23: -0.0325
REMARK 3 L TENSOR
REMARK 3 L11: 3.5167 L22: 3.4942
REMARK 3 L33: 2.5536 L12: 2.6520
REMARK 3 L13: -1.6413 L23: -1.8739
REMARK 3 S TENSOR
REMARK 3 S11: -0.0530 S12: -0.3483 S13: -0.0223
REMARK 3 S21: 0.4837 S22: 0.1344 S23: 0.5367
REMARK 3 S31: -0.3512 S32: 0.3318 S33: -0.5250
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 5LYQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-SEP-16.
REMARK 100 THE DEPOSITION ID IS D_1200001604.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 05-AUG-15
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 8
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 200K
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13334
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170
REMARK 200 RESOLUTION RANGE LOW (A) : 45.700
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 10.20
REMARK 200 R MERGE (I) : 0.09700
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.3000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24
REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0
REMARK 200 DATA REDUNDANCY IN SHELL : 5.80
REMARK 200 R MERGE FOR SHELL (I) : 0.89200
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4OC7
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 40.79
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MIB BUFFER PH 8, 25% (W/V) PEG
REMARK 280 1500, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.60350
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.31600
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.31600
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.90525
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.31600
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.31600
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.30175
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.31600
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.31600
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 84.90525
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.31600
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.31600
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.30175
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 56.60350
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000
REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -56.60350
REMARK 375
REMARK 375 SPECIAL POSITION
REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS
REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL
REMARK 375 POSITIONS.
REMARK 375
REMARK 375 ATOM RES CSSEQI
REMARK 375 HOH A 670 LIES ON A SPECIAL POSITION.
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 THR A 223
REMARK 465 SER A 224
REMARK 465 SER A 225
REMARK 465 ALA A 226
REMARK 465 ASN A 227
REMARK 465 GLU A 228
REMARK 465 LYS A 245
REMARK 465 THR A 246
REMARK 465 GLU A 247
REMARK 465 THR A 248
REMARK 465 TYR A 249
REMARK 465 VAL A 250
REMARK 465 GLU A 251
REMARK 465 ALA A 252
REMARK 465 ASN A 253
REMARK 465 MET A 254
REMARK 465 GLY A 255
REMARK 465 LEU A 256
REMARK 465 ASN A 257
REMARK 465 PRO A 258
REMARK 465 SER A 259
REMARK 465 SER A 260
REMARK 465 PRO A 261
REMARK 465 ASN A 262
REMARK 465 HIS A 459
REMARK 465 GLN A 460
REMARK 465 MET A 461
REMARK 465 THR A 462
REMARK 465 LYS B 471
REMARK 465 SER B 482
REMARK 465 SER B 483
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 HIS A 288 -2.37 74.34
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 7BE A 501
DBREF 5LYQ A 223 462 UNP P19793 RXRA_HUMAN 223 462
DBREF 5LYQ B 471 483 PDB 5LYQ 5LYQ 471 483
SEQRES 1 A 240 THR SER SER ALA ASN GLU ASP MET PRO VAL GLU ARG ILE
SEQRES 2 A 240 LEU GLU ALA GLU LEU ALA VAL GLU PRO LYS THR GLU THR
SEQRES 3 A 240 TYR VAL GLU ALA ASN MET GLY LEU ASN PRO SER SER PRO
SEQRES 4 A 240 ASN ASP PRO VAL THR ASN ILE CYS GLN ALA ALA ASP LYS
SEQRES 5 A 240 GLN LEU PHE THR LEU VAL GLU TRP ALA LYS ARG ILE PRO
SEQRES 6 A 240 HIS PHE SER GLU LEU PRO LEU ASP ASP GLN VAL ILE LEU
SEQRES 7 A 240 LEU ARG ALA GLY TRP ASN GLU LEU LEU ILE ALA SER PHE
SEQRES 8 A 240 SER HIS ARG SER ILE ALA VAL LYS ASP GLY ILE LEU LEU
SEQRES 9 A 240 ALA THR GLY LEU HIS VAL HIS ARG ASN SER ALA HIS SER
SEQRES 10 A 240 ALA GLY VAL GLY ALA ILE PHE ASP ARG VAL LEU THR GLU
SEQRES 11 A 240 LEU VAL SER LYS MET ARG ASP MET GLN MET ASP LYS THR
SEQRES 12 A 240 GLU LEU GLY CYS LEU ARG ALA ILE VAL LEU PHE ASN PRO
SEQRES 13 A 240 ASP SER LYS GLY LEU SER ASN PRO ALA GLU VAL GLU ALA
SEQRES 14 A 240 LEU ARG GLU LYS VAL TYR ALA SER LEU GLU ALA TYR CYS
SEQRES 15 A 240 LYS HIS LYS TYR PRO GLU GLN PRO GLY ARG PHE ALA LYS
SEQRES 16 A 240 LEU LEU LEU ARG LEU PRO ALA LEU ARG SER ILE GLY LEU
SEQRES 17 A 240 LYS CYS LEU GLU HIS LEU PHE PHE PHE LYS LEU ILE GLY
SEQRES 18 A 240 ASP THR PRO ILE ASP THR PHE LEU MET GLU MET LEU GLU
SEQRES 19 A 240 ALA PRO HIS GLN MET THR
SEQRES 1 B 13 LYS HIS LYS ILE LEU HIS ARG LEU LEU GLN ASP SER SER
HET 7BE A 501 30
HETNAM 7BE (2~{R})-6,6,9,9-TETRAMETHYLSPIRO[3,4,7,8-
HETNAM 2 7BE TETRAHYDROBENZO[G]CHROMENE-2,2'-3,4-DIHYDROCHROMENE]-
HETNAM 3 7BE 6'-CARBOXYLIC ACID
FORMUL 3 7BE C26 H30 O4
FORMUL 4 HOH *165(H2 O)
HELIX 1 AA1 PRO A 231 VAL A 242 1 12
HELIX 2 AA2 PRO A 264 ILE A 286 1 23
HELIX 3 AA3 PRO A 293 SER A 317 1 25
HELIX 4 AA4 ARG A 334 SER A 339 1 6
HELIX 5 AA5 VAL A 342 LEU A 353 1 12
HELIX 6 AA6 LEU A 353 GLN A 361 1 9
HELIX 7 AA7 ASP A 363 PHE A 376 1 14
HELIX 8 AA8 ASN A 385 TYR A 408 1 24
HELIX 9 AA9 GLY A 413 LEU A 420 1 8
HELIX 10 AB1 ARG A 421 GLY A 443 1 23
HELIX 11 AB2 ASP A 448 GLU A 456 1 9
HELIX 12 AB3 LYS B 473 ASP B 481 1 9
SHEET 1 AA1 2 GLY A 323 LEU A 325 0
SHEET 2 AA1 2 HIS A 331 HIS A 333 -1 O VAL A 332 N ILE A 324
SITE 1 AC1 12 ILE A 268 ALA A 271 ALA A 272 ASN A 306
SITE 2 AC1 12 LEU A 309 ILE A 310 PHE A 313 ARG A 316
SITE 3 AC1 12 LEU A 326 ALA A 327 CYS A 432 HIS A 435
CRYST1 64.632 64.632 113.207 90.00 90.00 90.00 P 43 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015472 0.000000 0.000000 0.00000
SCALE2 0.000000 0.015472 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008833 0.00000